jgi.p|Nanoce1779_2|225851, mRNA_8936 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|225851
Unique NamemRNA_8936
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length707
Alignment locationscaffold_29:260028..260734 -

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Properties
Property NameValue
TranscriptId225937
TrackFilteredModels2
ProteinId225851
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:260028..260734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|225851gene_8936Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|225851mRNA_8936-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8936CDS_8936Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8936 ID=mRNA_8936|Name=jgi.p|Nanoce1779_2|225851|organism=Nannochloropsis oceanica|type=mRNA|length=707bp
CCCGGGAGGGAGGGAGGGGAGGGGAGGGAGAATCTAGTTCATCCGTTTTT
GTTTCTTCATCCTCTTCTTGTTCATGCGTTGAGTCCATCATTCTTTCTCT
GATGATCCCTTGTCTTGCATTTTTTCTCTAGTATGTTTTCCCCAATTGGA
TTTTTCTACTATGCTTTCTCTAATGGTTTTTCTCTGATTATATGTTCTTC
TCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATACATATTTAACTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATATGT
TTTTCTCTAATATGTTCTTCTCCAATATATATTTAACTAATAAGTTCTTC
TCCAATATGTTTTTCTCTAATAAGTTCTTCTCCAATATATATTTAACTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATATGT
TTTTCTCTAATATGTTCTTCTCCAATATATATTTCTCTAATATGTTCTTC
TCCAATATATGTTTAACTAATAAGTTCTTCTCCAATATGTTTTTCTCTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATAAGTTCTTCTCCAATATAT
AAATCTCTAATACCTGATGTTATCTTACCCAGGGATCTGGCGGGAGCTCG
GATGAAGCGGATGATGATCTGGGGGACGACGATGCTTGTAAGTACCTTCC
TCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|225851

>mRNA_8936-protein ID=mRNA_8936-protein|Name=jgi.p|Nanoce1779_2|225851|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFFSNMFFSNMFFSNTYLTNKFFSNMFFSNMFFSNMFFSNMFFSNIYLTN
KFFSNMFFSNKFFSNIYLTNKFFSNMFFSNMFFSNMFFSNMFFSNIYFSN
MFFSNICLTNKFFSNMFFSNKFFSNMFFSNKFFSNI*
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mRNA from alignment at scaffold_29:260028..260734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8936 ID=mRNA_8936|Name=jgi.p|Nanoce1779_2|225851|organism=Nannochloropsis oceanica|type=mRNA|length=707bp|location=Sequence derived from alignment at scaffold_29:260028..260734- (Nannochloropsis oceanica)
CCCGGGAGGGAGGGAGGGGAGGGGAGGGAGAATCTAGTTCATCCGTTTTT
GTTTCTTCATCCTCTTCTTGTTCATGCGTTGAGTCCATCATTCTTTCTCT
GATGATCCCTTGTCTTGCATTTTTTCTCTAGTATGTTTTCCCCAATTGGA
TTTTTCTACTATGCTTTCTCTAATGGTTTTTCTCTGATTATATGTTCTTC
TCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATACATATTTAACTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATATGT
TTTTCTCTAATATGTTCTTCTCCAATATATATTTAACTAATAAGTTCTTC
TCCAATATGTTTTTCTCTAATAAGTTCTTCTCCAATATATATTTAACTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATATGT
TTTTCTCTAATATGTTCTTCTCCAATATATATTTCTCTAATATGTTCTTC
TCCAATATATGTTTAACTAATAAGTTCTTCTCCAATATGTTTTTCTCTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATAAGTTCTTCTCCAATATAT
AAATCTCTAATACCTGATGTTATCTTACCCAGGGATCTGGCGGGAGCTCG
GATGAAGCGGATGATGATCTGGGGGACGACGATGCTTGTAAGTACCTTCC
TCTCCCT
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Coding sequence (CDS) from alignment at scaffold_29:260028..260734-

>mRNA_8936 ID=mRNA_8936|Name=jgi.p|Nanoce1779_2|225851|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_29:260028..260734- (Nannochloropsis oceanica)
ATGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATACATA
TTTAACTAATAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCT
CCAATATGTTTTTCTCTAATATGTTCTTCTCCAATATATATTTAACTAAT
AAGTTCTTCTCCAATATGTTTTTCTCTAATAAGTTCTTCTCCAATATATA
TTTAACTAATAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCT
CCAATATGTTTTTCTCTAATATGTTCTTCTCCAATATATATTTCTCTAAT
ATGTTCTTCTCCAATATATGTTTAACTAATAAGTTCTTCTCCAATATGTT
TTTCTCTAATAAGTTCTTCTCCAATATGTTTTTCTCTAATAAGTTCTTCT
CCAATATATAA
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Synonyms
Publications