jgi.p|Nanoce1779_2|604547, mRNA_8932 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604547
Unique NamemRNA_8932
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length777
Alignment locationscaffold_29:249368..250144 +

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Properties
Property NameValue
TranscriptId604633
TrackFilteredModels2
ProteinId604547
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:249368..250144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604547gene_8932Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604547mRNA_8932-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8932CDS_8932Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8932 ID=mRNA_8932|Name=jgi.p|Nanoce1779_2|604547|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
GGGAGGGAGAGGAGGTTGTTGTTAGAAAGGTGTCACCAATTTGTTTTGTC
CAGATGAGGGCTGCGGAGAGTATACTGAGAGAAAGGAGGTGGGGAGAAAT
GAAGGAAGGGAGGGAGGAAGGCAGGGCTTTCACCTCTTGAACGGCTTCTG
GCAAGGTGCGCAGCAGCTCAATAAGGTTTTCCTCCCGTGGATCGGCTTCC
GCCAAAGCCTTTATTTCCTTACGAAAAAGGTGAGTGATTTTTTGAAAGAG
TCGCCGGAAGTATTGGGCCAGGACGGCGGGAGGGGGAAAGAGGGGGGGGG
GGATTGAGACTGTGCTGCTGGAGATGGCGGCGATGATGGTTGTGCCACTT
GTTTAGCTTCGGGAGGGAGAGGAGAGGGCTGGCGTCAGGCGATGGTGAAG
ACGTGGTGGATGAGGAGGAGGGAGAGGAGTGGGTGATGGTGGCGACGGTC
TTGAGGAGGGAGGCGAGGATAGCCTCAGATCCTTGGACGTGGTAGAGGAG
AAGCCAGAGAAAGGAGAGGAGGAAGAAGTGTCGTACACGTAGGTGGCGAC
ATGTGGGCCTGGCTATGGCGCGTGTGCTGGTGCTTATACTGGTGGATGGC
TCCGTGATTTTCATTTCCTCTGGCACGTTCCGCCTTGGCGTCCAGTGGGG
AAGGGGGGCAACAAAGGGGGCGGAGGGAGGGGAGGGCAGGAGGGCGCTGC
GGGGTGGGTGCACGTGCTCGAGCAGCCCTGCGTCGCGTGGCGCTCCCTTC
CTTGCGTCCTTAGGGGGGCTTGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|604547

>mRNA_8932-protein ID=mRNA_8932-protein|Name=jgi.p|Nanoce1779_2|604547|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MARVLVLILVDGSVIFISSGTFRLGVQWGRGATKGAEGGEGRRALRGGCT
CSSSPASRGAPFLASLGGLAC
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mRNA from alignment at scaffold_29:249368..250144+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8932 ID=mRNA_8932|Name=jgi.p|Nanoce1779_2|604547|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at scaffold_29:249368..250144+ (Nannochloropsis oceanica)
GGGAGGGAGAGGAGGTTGTTGTTAGAAAGGTGTCACCAATTTGTTTTGTC
CAGATGAGGGCTGCGGAGAGTATACTGAGAGAAAGGAGGTGGGGAGAAAT
GAAGGAAGGGAGGGAGGAAGGCAGGGCTTTCACCTCTTGAACGGCTTCTG
GCAAGGTGCGCAGCAGCTCAATAAGGTTTTCCTCCCGTGGATCGGCTTCC
GCCAAAGCCTTTATTTCCTTACGAAAAAGGTGAGTGATTTTTTGAAAGAG
TCGCCGGAAGTATTGGGCCAGGACGGCGGGAGGGGGAAAGAGGGGGGGGG
GGATTGAGACTGTGCTGCTGGAGATGGCGGCGATGATGGTTGTGCCACTT
GTTTAGCTTCGGGAGGGAGAGGAGAGGGCTGGCGTCAGGCGATGGTGAAG
ACGTGGTGGATGAGGAGGAGGGAGAGGAGTGGGTGATGGTGGCGACGGTC
TTGAGGAGGGAGGCGAGGATAGCCTCAGATCCTTGGACGTGGTAGAGGAG
AAGCCAGAGAAAGGAGAGGAGGAAGAAGTGTCGTACACGTAGGTGGCGAC
ATGTGGGCCTGGCTATGGCGCGTGTGCTGGTGCTTATACTGGTGGATGGC
TCCGTGATTTTCATTTCCTCTGGCACGTTCCGCCTTGGCGTCCAGTGGGG
AAGGGGGGCAACAAAGGGGGCGGAGGGAGGGGAGGGCAGGAGGGCGCTGC
GGGGTGGGTGCACGTGCTCGAGCAGCCCTGCGTCGCGTGGCGCTCCCTTC
CTTGCGTCCTTAGGGGGGCTTGCCTGT
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Coding sequence (CDS) from alignment at scaffold_29:249368..250144+

>mRNA_8932 ID=mRNA_8932|Name=jgi.p|Nanoce1779_2|604547|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_29:249368..250144+ (Nannochloropsis oceanica)
ATGGCGCGTGTGCTGGTGCTTATACTGGTGGATGGCTCCGTGATTTTCAT
TTCCTCTGGCACGTTCCGCCTTGGCGTCCAGTGGGGAAGGGGGGCAACAA
AGGGGGCGGAGGGAGGGGAGGGCAGGAGGGCGCTGCGGGGTGGGTGCACG
TGCTCGAGCAGCCCTGCGTCGCGTGGCGCTCCCTTCCTTGCGTCCTTAGG
GGGGCTTGCCTGT
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Synonyms
Publications