jgi.p|Nanoce1779_2|574544, mRNA_893 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574544
Unique Name	mRNA_893
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2659
Alignment location	scaffold_2:676375..679033 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574630
Track	FilteredModels2
ProteinId	574544

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:676375..679033 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574544	gene_893	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574544	mRNA_893-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_893	CDS_893	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:676375..679033-
coding sequence from alignment at scaffold_2:676375..679033-

mRNA sequence

>mRNA_893 ID=mRNA_893|Name=jgi.p|Nanoce1779_2|574544|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp
TTGCCATCGTATGTGGAAGCCTTCCTCGTCCCGGCCGCCCGGCTCACGGC
CATGAGCAGCAGCCTCGCAGGAAAGACCTGTCTAAACGAGCAAGATTTAG
TGACGGTACGTGTGCCTCGAATGTTCGTAGTGGAGCCTCAGGCATTCCTA
TTCAGAGAAAACTTGTCTGTGAAAACCTTGTATGTGCTGAATGATTCCCC
TCCTCCAACCTCCTCAGGTGGCAGTGAAAAGAGGAGCACTCAACATGGCA
GCCAGCACCACAACAATCCCAGCTACCTCCTCCTCCACGACAACGGCCTT
GCCTACCCTGGCAGAGCTTGGCGAAATGCGCAAGCCCGGGCTAATGCAGC
GCTTCATTTTCTTTGGAGGGAAGGGTGGGGTGGGCAAGACGTCGACCTCC
ACGGCCATTGCATTGCACTTGGCCGATCAAGGCCTACGCACGCTTGTCAT
CAGCACGGATCCAGCACATTCTCTGGGAGATTTGCTTGACCAGAAGGTGT
CGGGCGGTGACCCGGTGCAGGTGCTGGGGTGTGATAATTTGTGGGCCATG
GAGGTGGACACAACGCGGGCACTCAACCGCTTCCGGGCGCTCTTCAAAGA
GCTGGACGTGGGGGCTTTGGCGACACAATTCGGGGTTTCGGAGGAAATAT
TGGGTGGACTGGGCCTAGAAGATTTTGTTGCCATTCTCAATAACCCTCCT
CCTGGCATCGATGAGCTCATTGCCCTGGCGGAGGTGGTGCGTCTGTCAAA
GGAAAGCGGCGGGAGCAGTGAGTTGGGAGGGACCGCCGGCGGGATCACAT
TTGATCGTGTGGTCATTGACACGGCACCCACAGGACATACTCTGCGGTTG
CTGAGTTTTCCTGATTTTTTGGATGGCTTTCTGGGTAAGCTGGTGAAGCT
CCAGCTACGTGTGTCCAAGGTGCTCTCGACGCTCTCAGGCCTGTTTGGGG
GAGGGTCGGCTGAATCGAAGGAGCGGCTGCGGGCGACCGACGAGGCGTTT
GCGAAGGTGGAGAAGGCAAAGCAGCAGATGGTGGAGTTGCGGGATTTGTT
TCGAGACCAAGACGCAACCGAGTTTTGTATAGTCACGATCGCTACGCAGC
TGGCTGTGGCGGAGTCGAAGCGGCTGATGATGGCGTTGAAGCAGGAAAAT
ATTGCCGTTAGGCACCTGGTCGTGAATAAATTGGTGCAAGACGAAGACCA
AACGCAGCATATGGCGAGGATGAGTAAGGGCCAGGCCCATTGTTTGCAGC
GGTTGGAGCGCGGGGTGGTAGCAAAGCACGGGCTGGCTTCTGTTCAGGTG
CCTTACTTAGACGTGGAGGTCCGTGGGGTTTTTGGTCTTAAATTCATGGC
GGATATTGCTTACAGAACAGAACCGGGATCGCCGTTTGGGGATCTGTTTC
AAACAGGCGGGCCGATTGCGACAAGGTTTGTCTTGTTTGGTGGGAAGGGG
GGGGTCGGGAAGACGTCGTCCTCGACGGCTTTGGCTGTGAAGCTGGCAGA
TGAGGGCCTCACGACCGCGGTGGTGAGCACGGACCCGGCACATTCCTTGG
GGGATGCGTTGGACATGGATTTATCGGGTGGGAAGGTGACGGAGGTAAGC
GGGTTATGTGGGCCGGGGCGACTGTTTGCCTTGGAGGTGGACACGGGTGA
GGCGGTGGAGGAGTTTAGGAGCGTGCTGCAAGGGTTGGGAGGGGGAATGA
AGGGGGGGAATAGAAGGAAGCAGAAGGCGGGATTGATGGGCCAGTTGGAG
TTGGGGGAGTTTGCGGATGTGCTCGAGTCAGCGCCCCCGGGGACAGATGA
GTTGGTGGCGTTGGCACGAGTCTTGAAGCTATTGAAGGAGGGGACGCCGG
GGGAGGGGAGAAAATTTGATAGGATCGTTATTGACACAGCACCCACCGGG
CATACTTTGCGACTGTTGAGCTTTCCCGAGTTTTTAGAGGGCTTTATTGA
GAGGGTGATGGCGATCAGGGATCGTCTGAAGGGAGCGAATTCGTTGATGA
GTATGTTTGGGGGGTTAGGGGGAGGGGCAGCAGAAAGCGGGAACGACGGC
GAGGAGGAAGAAGAGGAGAAGGAGGCGGTGGAGGACGAGGGGCCTCCGAG
GGATCGATTGAGGGAGTTTCAGTTGAAGATGATTGAGTTGGATGATTTGC
TTCATGACCCAGCAAGATCCGAGTTTGTGGCTGTGACTATACCGACAGAG
ATGGCCGTGGCGGAGACGGAGCGATTGGTAGAAGCCCTGAAGGAGCAAGA
TGTTGCCGTGCGTCGCTTAGTTGTGAATCAAGTCCTGGCCGAGCATGTGA
AGGACGGGTATTGGAATCGGCTTCGCGCCGGTCAGCAGGTGGCGTTGACA
GATGTGGGGAAGGCAGCGGCGGCGGCGGGGGTGCACTTGACGGAGGTGCC
GTATTTCGACACGGAGATGCGGACAGTGTACGCGCTGAGGGTGTTGGCTG
ACGTGCTGACTAAGCCCAAGCCGTAAGGTAGAAGGGAAAGAGTGAATAGA
GGTGTGAGCAGGAAGCTGCCCCGGGTGATATCTCATGGAAGGATTTAGTA
GGAGACGGTAAGAAAGAAGACTCTCATGCACTGATGTAAAAAATACACAA
TTTAAAAACAAAATACTCACAAAAAGATACATCCACTGGTAAACAAACGT
ACATTTGGG

protein sequence of jgi.p|Nanoce1779_2|574544

>mRNA_893-protein ID=mRNA_893-protein|Name=jgi.p|Nanoce1779_2|574544|organism=Nannochloropsis oceanica|type=polypeptide|length=762bp
MIPLLQPPQVAVKRGALNMAASTTTIPATSSSTTTALPTLAELGEMRKPG
LMQRFIFFGGKGGVGKTSTSTAIALHLADQGLRTLVISTDPAHSLGDLLD
QKVSGGDPVQVLGCDNLWAMEVDTTRALNRFRALFKELDVGALATQFGVS
EEILGGLGLEDFVAILNNPPPGIDELIALAEVVRLSKESGGSSELGGTAG
GITFDRVVIDTAPTGHTLRLLSFPDFLDGFLGKLVKLQLRVSKVLSTLSG
LFGGGSAESKERLRATDEAFAKVEKAKQQMVELRDLFRDQDATEFCIVTI
ATQLAVAESKRLMMALKQENIAVRHLVVNKLVQDEDQTQHMARMSKGQAH
CLQRLERGVVAKHGLASVQVPYLDVEVRGVFGLKFMADIAYRTEPGSPFG
DLFQTGGPIATRFVLFGGKGGVGKTSSSTALAVKLADEGLTTAVVSTDPA
HSLGDALDMDLSGGKVTEVSGLCGPGRLFALEVDTGEAVEEFRSVLQGLG
GGMKGGNRRKQKAGLMGQLELGEFADVLESAPPGTDELVALARVLKLLKE
GTPGEGRKFDRIVIDTAPTGHTLRLLSFPEFLEGFIERVMAIRDRLKGAN
SLMSMFGGLGGGAAESGNDGEEEEEEKEAVEDEGPPRDRLREFQLKMIEL
DDLLHDPARSEFVAVTIPTEMAVAETERLVEALKEQDVAVRRLVVNQVLA
EHVKDGYWNRLRAGQQVALTDVGKAAAAAGVHLTEVPYFDTEMRTVYALR
VLADVLTKPKP*

mRNA from alignment at scaffold_2:676375..679033-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_893 ID=mRNA_893|Name=jgi.p|Nanoce1779_2|574544|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp|location=Sequence derived from alignment at scaffold_2:676375..679033- (Nannochloropsis oceanica)
TTGCCATCGTATGTGGAAGCCTTCCTCGTCCCGGCCGCCCGGCTCACGGC
CATGAGCAGCAGCCTCGCAGGAAAGACCTGTCTAAACGAGCAAGATTTAG
TGACGGTACGTGTGCCTCGAATGTTCGTAGTGGAGCCTCAGGCATTCCTA
TTCAGAGAAAACTTGTCTGTGAAAACCTTGTATGTGCTGAATGATTCCCC
TCCTCCAACCTCCTCAGGTGGCAGTGAAAAGAGGAGCACTCAACATGGCA
GCCAGCACCACAACAATCCCAGCTACCTCCTCCTCCACGACAACGGCCTT
GCCTACCCTGGCAGAGCTTGGCGAAATGCGCAAGCCCGGGCTAATGCAGC
GCTTCATTTTCTTTGGAGGGAAGGGTGGGGTGGGCAAGACGTCGACCTCC
ACGGCCATTGCATTGCACTTGGCCGATCAAGGCCTACGCACGCTTGTCAT
CAGCACGGATCCAGCACATTCTCTGGGAGATTTGCTTGACCAGAAGGTGT
CGGGCGGTGACCCGGTGCAGGTGCTGGGGTGTGATAATTTGTGGGCCATG
GAGGTGGACACAACGCGGGCACTCAACCGCTTCCGGGCGCTCTTCAAAGA
GCTGGACGTGGGGGCTTTGGCGACACAATTCGGGGTTTCGGAGGAAATAT
TGGGTGGACTGGGCCTAGAAGATTTTGTTGCCATTCTCAATAACCCTCCT
CCTGGCATCGATGAGCTCATTGCCCTGGCGGAGGTGGTGCGTCTGTCAAA
GGAAAGCGGCGGGAGCAGTGAGTTGGGAGGGACCGCCGGCGGGATCACAT
TTGATCGTGTGGTCATTGACACGGCACCCACAGGACATACTCTGCGGTTG
CTGAGTTTTCCTGATTTTTTGGATGGCTTTCTGGGTAAGCTGGTGAAGCT
CCAGCTACGTGTGTCCAAGGTGCTCTCGACGCTCTCAGGCCTGTTTGGGG
GAGGGTCGGCTGAATCGAAGGAGCGGCTGCGGGCGACCGACGAGGCGTTT
GCGAAGGTGGAGAAGGCAAAGCAGCAGATGGTGGAGTTGCGGGATTTGTT
TCGAGACCAAGACGCAACCGAGTTTTGTATAGTCACGATCGCTACGCAGC
TGGCTGTGGCGGAGTCGAAGCGGCTGATGATGGCGTTGAAGCAGGAAAAT
ATTGCCGTTAGGCACCTGGTCGTGAATAAATTGGTGCAAGACGAAGACCA
AACGCAGCATATGGCGAGGATGAGTAAGGGCCAGGCCCATTGTTTGCAGC
GGTTGGAGCGCGGGGTGGTAGCAAAGCACGGGCTGGCTTCTGTTCAGGTG
CCTTACTTAGACGTGGAGGTCCGTGGGGTTTTTGGTCTTAAATTCATGGC
GGATATTGCTTACAGAACAGAACCGGGATCGCCGTTTGGGGATCTGTTTC
AAACAGGCGGGCCGATTGCGACAAGGTTTGTCTTGTTTGGTGGGAAGGGG
GGGGTCGGGAAGACGTCGTCCTCGACGGCTTTGGCTGTGAAGCTGGCAGA
TGAGGGCCTCACGACCGCGGTGGTGAGCACGGACCCGGCACATTCCTTGG
GGGATGCGTTGGACATGGATTTATCGGGTGGGAAGGTGACGGAGGTAAGC
GGGTTATGTGGGCCGGGGCGACTGTTTGCCTTGGAGGTGGACACGGGTGA
GGCGGTGGAGGAGTTTAGGAGCGTGCTGCAAGGGTTGGGAGGGGGAATGA
AGGGGGGGAATAGAAGGAAGCAGAAGGCGGGATTGATGGGCCAGTTGGAG
TTGGGGGAGTTTGCGGATGTGCTCGAGTCAGCGCCCCCGGGGACAGATGA
GTTGGTGGCGTTGGCACGAGTCTTGAAGCTATTGAAGGAGGGGACGCCGG
GGGAGGGGAGAAAATTTGATAGGATCGTTATTGACACAGCACCCACCGGG
CATACTTTGCGACTGTTGAGCTTTCCCGAGTTTTTAGAGGGCTTTATTGA
GAGGGTGATGGCGATCAGGGATCGTCTGAAGGGAGCGAATTCGTTGATGA
GTATGTTTGGGGGGTTAGGGGGAGGGGCAGCAGAAAGCGGGAACGACGGC
GAGGAGGAAGAAGAGGAGAAGGAGGCGGTGGAGGACGAGGGGCCTCCGAG
GGATCGATTGAGGGAGTTTCAGTTGAAGATGATTGAGTTGGATGATTTGC
TTCATGACCCAGCAAGATCCGAGTTTGTGGCTGTGACTATACCGACAGAG
ATGGCCGTGGCGGAGACGGAGCGATTGGTAGAAGCCCTGAAGGAGCAAGA
TGTTGCCGTGCGTCGCTTAGTTGTGAATCAAGTCCTGGCCGAGCATGTGA
AGGACGGGTATTGGAATCGGCTTCGCGCCGGTCAGCAGGTGGCGTTGACA
GATGTGGGGAAGGCAGCGGCGGCGGCGGGGGTGCACTTGACGGAGGTGCC
GTATTTCGACACGGAGATGCGGACAGTGTACGCGCTGAGGGTGTTGGCTG
ACGTGCTGACTAAGCCCAAGCCGTAAGGTAGAAGGGAAAGAGTGAATAGA
GGTGTGAGCAGGAAGCTGCCCCGGGTGATATCTCATGGAAGGATTTAGTA
GGAGACGGTAAGAAAGAAGACTCTCATGCACTGATGTAAAAAATACACAA
TTTAAAAACAAAATACTCACAAAAAGATACATCCACTGGTAAACAAACGT
ACATTTGGG

Coding sequence (CDS) from alignment at scaffold_2:676375..679033-

>mRNA_893 ID=mRNA_893|Name=jgi.p|Nanoce1779_2|574544|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_2:676375..679033- (Nannochloropsis oceanica)
ATGATTCCCCTCCTCCAACCTCCTCAGGTGGCAGTGAAAAGAGGAGCACT
CAACATGGCAGCCAGCACCACAACAATCCCAGCTACCTCCTCCTCCACGA
CAACGGCCTTGCCTACCCTGGCAGAGCTTGGCGAAATGCGCAAGCCCGGG
CTAATGCAGCGCTTCATTTTCTTTGGAGGGAAGGGTGGGGTGGGCAAGAC
GTCGACCTCCACGGCCATTGCATTGCACTTGGCCGATCAAGGCCTACGCA
CGCTTGTCATCAGCACGGATCCAGCACATTCTCTGGGAGATTTGCTTGAC
CAGAAGGTGTCGGGCGGTGACCCGGTGCAGGTGCTGGGGTGTGATAATTT
GTGGGCCATGGAGGTGGACACAACGCGGGCACTCAACCGCTTCCGGGCGC
TCTTCAAAGAGCTGGACGTGGGGGCTTTGGCGACACAATTCGGGGTTTCG
GAGGAAATATTGGGTGGACTGGGCCTAGAAGATTTTGTTGCCATTCTCAA
TAACCCTCCTCCTGGCATCGATGAGCTCATTGCCCTGGCGGAGGTGGTGC
GTCTGTCAAAGGAAAGCGGCGGGAGCAGTGAGTTGGGAGGGACCGCCGGC
GGGATCACATTTGATCGTGTGGTCATTGACACGGCACCCACAGGACATAC
TCTGCGGTTGCTGAGTTTTCCTGATTTTTTGGATGGCTTTCTGGGTAAGC
TGGTGAAGCTCCAGCTACGTGTGTCCAAGGTGCTCTCGACGCTCTCAGGC
CTGTTTGGGGGAGGGTCGGCTGAATCGAAGGAGCGGCTGCGGGCGACCGA
CGAGGCGTTTGCGAAGGTGGAGAAGGCAAAGCAGCAGATGGTGGAGTTGC
GGGATTTGTTTCGAGACCAAGACGCAACCGAGTTTTGTATAGTCACGATC
GCTACGCAGCTGGCTGTGGCGGAGTCGAAGCGGCTGATGATGGCGTTGAA
GCAGGAAAATATTGCCGTTAGGCACCTGGTCGTGAATAAATTGGTGCAAG
ACGAAGACCAAACGCAGCATATGGCGAGGATGAGTAAGGGCCAGGCCCAT
TGTTTGCAGCGGTTGGAGCGCGGGGTGGTAGCAAAGCACGGGCTGGCTTC
TGTTCAGGTGCCTTACTTAGACGTGGAGGTCCGTGGGGTTTTTGGTCTTA
AATTCATGGCGGATATTGCTTACAGAACAGAACCGGGATCGCCGTTTGGG
GATCTGTTTCAAACAGGCGGGCCGATTGCGACAAGGTTTGTCTTGTTTGG
TGGGAAGGGGGGGGTCGGGAAGACGTCGTCCTCGACGGCTTTGGCTGTGA
AGCTGGCAGATGAGGGCCTCACGACCGCGGTGGTGAGCACGGACCCGGCA
CATTCCTTGGGGGATGCGTTGGACATGGATTTATCGGGTGGGAAGGTGAC
GGAGGTAAGCGGGTTATGTGGGCCGGGGCGACTGTTTGCCTTGGAGGTGG
ACACGGGTGAGGCGGTGGAGGAGTTTAGGAGCGTGCTGCAAGGGTTGGGA
GGGGGAATGAAGGGGGGGAATAGAAGGAAGCAGAAGGCGGGATTGATGGG
CCAGTTGGAGTTGGGGGAGTTTGCGGATGTGCTCGAGTCAGCGCCCCCGG
GGACAGATGAGTTGGTGGCGTTGGCACGAGTCTTGAAGCTATTGAAGGAG
GGGACGCCGGGGGAGGGGAGAAAATTTGATAGGATCGTTATTGACACAGC
ACCCACCGGGCATACTTTGCGACTGTTGAGCTTTCCCGAGTTTTTAGAGG
GCTTTATTGAGAGGGTGATGGCGATCAGGGATCGTCTGAAGGGAGCGAAT
TCGTTGATGAGTATGTTTGGGGGGTTAGGGGGAGGGGCAGCAGAAAGCGG
GAACGACGGCGAGGAGGAAGAAGAGGAGAAGGAGGCGGTGGAGGACGAGG
GGCCTCCGAGGGATCGATTGAGGGAGTTTCAGTTGAAGATGATTGAGTTG
GATGATTTGCTTCATGACCCAGCAAGATCCGAGTTTGTGGCTGTGACTAT
ACCGACAGAGATGGCCGTGGCGGAGACGGAGCGATTGGTAGAAGCCCTGA
AGGAGCAAGATGTTGCCGTGCGTCGCTTAGTTGTGAATCAAGTCCTGGCC
GAGCATGTGAAGGACGGGTATTGGAATCGGCTTCGCGCCGGTCAGCAGGT
GGCGTTGACAGATGTGGGGAAGGCAGCGGCGGCGGCGGGGGTGCACTTGA
CGGAGGTGCCGTATTTCGACACGGAGATGCGGACAGTGTACGCGCTGAGG
GTGTTGGCTGACGTGCTGACTAAGCCCAAGCCGTAA

Synonyms

Publications