|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 673853 |
| Track | FilteredModels2 |
| ProteinId | 673767 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_29 | supercontig | scaffold_29:243226..245137 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8929 ID=mRNA_8929|Name=jgi.p|Nanoce1779_2|673767|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
GAGCCTTCCAACAATAAATTGTTGTCATCCCTTATTTCTCGTCCGAGTTT
TTCTAGCGACTTTGACAGGTTTTTTGACCTGGCAAAGTCCCCGGTAGTAG
GATCGAGCGATGACGACTTTCACGCTTTCCTCCGAAGCCTCGTTTTCTTC
ATCTCTTGCATCGCGATGGCCTGGCGCGCAGGAGACACCCACGGTTCTCG
GTCCAAAGACGTTTTGAGCTGCCAAATGGCGGGGACGACAAACGCCACTA
TAGCCAGCAATATCGACAGCAGCAGCAATAGCAGCAGTAACAGCTCCAGT
AATAGCACTGGCAGCAGCAGCAGCAACAGCAGCACTGGCACTAGCAGCAA
AAATAAAAGGTGCCCTCCTCATACCCAACAACCACCCCCAACCCGAACCA
GCCGCCTCGAGGTCCTCAAGGGCCTTTCCCTACGCTTCGTCGCCGCCGAA
GGCAAAGGCTGGGGATGTCCTCTACCTCCTGCACACGTTCCCACCACCAG
CGACGCCAACCATGTTTTTAAGTACCTTGGTGCTGCGTTTGTTGACCCAT
TTTCGGGTGCTATCAAGACTCAACGAGGCCTTACTATCTCCCTGTTGGTG
CTTGATGAGGATGGAGAAGAATACGGGAGATTGGATAACCCTCGTCCATG
GCCCGGGGGGGGCGTGTATTTTTTTGAGGGTGTGACTCTCCCCAAGAAGG
GGCTGTGGACGTTGCGGTTGACAGCTAAGGAGACGATACCCGGAGGAAGG
GGAGGGGTAGGAAGGAGGGAAGATGGGGAGATGGTGCTGCAGGGGGAGGT
TGTGGGTCAGCGGGCAGTCATCCTGTTGGGAAACGGTGGTCGAAAAGAGA
AGGAGGAGGAAGGAAGGGAGGAAGGGGTGAAGGCCAACGTCACCTCCACC
AAAAGCACGACGGACGACAAGGAGAACTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTTTCCTTTCCTTTTAAACCTGCCCAAGGGCGTCT
CTCTCGGCCTGGGGGATGCACCTGTAATTGCTCTGGATTACTTAGGCCCC
CGTTTGAACACCGGGAGGAAAAGCACTTACGGCAGCAGCAACAACAGCAG
CAGTACGACAAACACCTCTCTCAATAGCTGCAGCACCAGCAGCACCAGCA
GCAGCAGCGGCAGTCATGGGAAGAGCAAATCACTGTTGCCTCGTCGTGCA
TGCAACAGAGAGGACTTGATTTTGGCGTTAGCGTTGACGCAAGTACACGA
GGACGAGGAAGGCGGAGGGAGGGAGGGAGGGGCAGGAGGGAGGAAGCGGA
AGGCAGATGGAGGCGGAGGAGGGGAGGGAGGAGGAGGAGGAGGAGGAAAA
GGAAGGGGGGAGATAATGGCGGCTCAGAAGGCGCTGTTAAAGAAGTGGAA
AAATGTGCCGCGGGATTGTCGATGGATGGAGTGGGAGGCATTGAGGGAAG
GGAGGACGGGTGTAGTGTTTGAAAGGCGAGAGTGGTGGAGGGGGCTAGTG
GGATTGATGGAATGGAAGAAACCGAGAGGAGAAGGAGGCGGGGTAGGGAG
GGAGGGAGGAAGGGAGGGGGGGAGGATCATTACTGAGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|673767 >mRNA_8929-protein ID=mRNA_8929-protein|Name=jgi.p|Nanoce1779_2|673767|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MAWRAGDTHGSRSKDVLSCQMAGTTNATIASNIDSSSNSSSNSSSNSTGS
SSSNSSTGTSSKNKRCPPHTQQPPPTRTSRLEVLKGLSLRFVAAEGKGWG
CPLPPAHVPTTSDANHVFKYLGAAFVDPFSGAIKTQRGLTISLLVLDEDG
EEYGRLDNPRPWPGGGVYFFEGVTLPKKGLWTLRLTAKETIPGGRGGVGR
REDGEMVLQGEVVGQRAVILLGNGGRKEKEEEGREEGVKANVTSTKSTTD
DKENSSSSSSSSSSSSSFPFLLNLPKGVSLGLGDAPVIALDYLGPRLNTG
RKSTYGSSNNSSSTTNTSLNSCSTSSTSSSSGSHGKSKSLLPRRACNRED
LILALALTQVHEDEEGGGREGGAGGRKRKADGGGGGEGGGGGGGKGRGEI
MAAQKALLKKWKNVPRDCRWMEWEALREGRTGVVFERREWWRGLVGLMEW
KKPRGEGGGVGREGGREGGRIITE* back to topmRNA from alignment at scaffold_29:243226..245137- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8929 ID=mRNA_8929|Name=jgi.p|Nanoce1779_2|673767|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at scaffold_29:243226..245137- (Nannochloropsis oceanica)
GAGCCTTCCAACAATAAATTGTTGTCATCCCTTATTTCTCGTCCGAGTTT
TTCTAGCGACTTTGACAGGTTTTTTGACCTGGCAAAGTCCCCGGTAGTAG
GATCGAGCGATGACGACTTTCACGCTTTCCTCCGAAGCCTCGTTTTCTTC
ATCTCTTGCATCGCGATGGCCTGGCGCGCAGGAGACACCCACGGTTCTCG
GTCCAAAGACGTTTTGTAGCACAAACGTAACTATAATTGCGTCAAAATTT
GTGTACCTTCCAAGTCCGGCATATATCTATTCCCTCGAGGCAAAAACCCT
TACCACTTACGATGACCTTTCCCCATCTCCCCCCAGGAGCTGCCAAATGG
CGGGGACGACAAACGCCACTATAGCCAGCAATATCGACAGCAGCAGCAAT
AGCAGCAGTAACAGCTCCAGTAATAGCACTGGCAGCAGCAGCAGCAACAG
CAGCACTGGCACTAGCAGCAAAAATAAAAGGGTAACCACCAACTCCTCTT
CCCCTGCCTCCGAAACGACCAGTCTACGCTCCACGCGGCGCTCTGCGCGC
GGCTCCATTTCCGTTCCTCCTTCTTCCAGCACCGGCACCAGCACGACCAA
CACAGCCTCCTGCGAATCCACGGAATGTCTGCCACCTGATGAAAACCACG
CCCCTGCCCCCCCCCTTCCCCACACCCTCCAGTGCCCTCCTCATACCCAA
CAACCACCCCCAACCCGAACCAGCCGCCTCGAGGTCCTCAAGGGCCTTTC
CCTACGCTTCGTCGCCGCCGAAGGCAAAGGCTGGGGATGTCCTCTACCTC
CTGCACACGTTCCCACCACCAGCGACGCCAACCATGTTTTTAAGTACCTT
GGTGCTGCGTTTGTTGACCCATTTTCGGGTGCTATCAAGACTCAACGAGG
CCTTACTATCTCCCTGTTGGTGCTTGATGAGGATGGAGAAGAATACGGGA
GATTGGATAACCCTCGTCCATGGCCCGGGGGGGGCGTGTATTTTTTTGAG
GGTGTGACTCTCCCCAAGAAGGGGCTGTGGACGTTGCGGTTGACAGCTAA
GGAGACGATACCCGGAGGAAGGGGAGGGGTAGGAAGGAGGGAAGATGGGG
AGATGGTGCTGCAGGGGGAGGTTGTGGGTCAGCGGGCAGTCATCCTGTTG
GGAAACGGTGGTCGAAAAGAGAAGGAGGAGGAAGGAAGGGAGGAAGGGGT
GAAGGCCAACGTCACCTCCACCAAAAGCACGACGGACGACAAGGAGAACT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTCCTTTCCTT
TTAAACCTGCCCAAGGGCGTCTCTCTCGGCCTGGGGGATGCACCTGTAAT
TGCTCTGGATTACTTAGGCCCCCGTTTGAACACCGGGAGGAAAAGCACTT
ACGGCAGCAGCAACAACAGCAGCAGTACGACAAACACCTCTCTCAATAGC
TGCAGCACCAGCAGCACCAGCAGCAGCAGCGGCAGTCATGGGAAGAGCAA
ATCACTGTTGCCTCGTCGTGCATGCAACAGAGAGGACTTGATTTTGGCGT
TAGCGTTGACGCAAGTACACGAGGACGAGGAAGGCGGAGGGAGGGAGGGA
GGGGCAGGAGGGAGGAAGCGGAAGGCAGATGGAGGCGGAGGAGGGGAGGG
AGGAGGAGGAGGAGGAGGAAAAGGAAGGGGGGAGATAATGGCGGCTCAGA
AGGCGCTGTTAAAGAAGTGGAAAAATGTGCCGCGGGATTGTCGATGGATG
GAGTGGGAGGCATTGAGGGAAGGGAGGACGGGTGTAGTGTTTGAAAGGCG
AGAGTGGTGGAGGGGGCTAGTGGGATTGATGGAATGGAAGAAACCGAGAG
GAGAAGGAGGCGGGGTAGGGAGGGAGGGAGGAAGGGAGGGGGGGAGGATC
ATTACTGAGTGA back to topCoding sequence (CDS) from alignment at scaffold_29:243226..245137- >mRNA_8929 ID=mRNA_8929|Name=jgi.p|Nanoce1779_2|673767|organism=Nannochloropsis oceanica|type=CDS|length=4275bp|location=Sequence derived from alignment at scaffold_29:243226..245137- (Nannochloropsis oceanica)
TGCCCTCCTCATACCCAACAACCACCCCCAACCCGAACCAGCCGCCTCGA
GGTCCTCAAGGGCCTTTCCCTACGCTTCGTCGCCGCCGAAGGCAAAGGCT
GGGGATGTCCTCTACCTCCTGCACACGTTCCCACCACCAGCGACGCCAAC
CATGTTTTTAAGTACCTTGGTGCTGCGTTTGTTGACCCATTTTCGGGTGC
TATCAAGACTCAACGAGGCCTTACTATCTCCCTGTTGGTGCTTGATGAGG
ATGGAGAAGAATACGGGAGATTGGATAACCCTCGTCCATGGCCCGGGGGG
GGCGTGTATTTTTTTGAGGGTGTGACTCTCCCCAAGAAGGGGCTGTGGAC
GTTGCGGTTGACAGCTAAGGAGACGATACCCGGAGGAAGGGGAGGGGTAG
GAAGGAGGGAAGATGGGGAGATGGTGCTGCAGGGGGAGGTTGTGGGTCAG
CGGGCAGTCATCCTGTTGGGAAACGGTGGTCGAAAAGAGAAGGAGGAGGA
AGGAAGGGAGGAAGGGGTGAAGGCCAACGTCACCTCCACCAAAAGCACGA
CGGACGACAAGGAGAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTTTCCTTTCCTTTTAAACCTGCCCAAGGGCGTCTCTCTCGGCCT
GGGGGATGCACCTGTAATTGCTCTGGATTACTTAGGCCCCCGTTTGAACA
CCGGGAGGAAAAGCACTTACGGCAGCAGCAACAACAGCAGCAGTACGACA
AACACCTCTCTCAATAGCTGCAGCACCAGCAGCACCAGCAGCAGCAGCGG
CAGTCATGGGAAGAGCAAATCACTGTTGCCTCGTCGTGCATGCAACAGAG
AGGACTTGATTTTGGCGTTAGCGTTGACGCAAGTACACGAGGACGAGGAA
GGCGGAGGGAGGGAGGGAGGGGCAGGAGGGAGGAAGCGGAAGGCAGATGG
AGGCGGAGGAGGGGAGGGAGGAGGAGGAGGAGGAGGAAAAGGAAGGGGGG
AGATAATGGCGGCTCAGAAGGCGCTGTTAAAGAAGTGGAAAAATGTGCCG
CGGGATTGTCGATGGATGGAGTGGGAGGCATTGAGGGAAGGGAGGACGGG
TGTAGTGTTTGAAAGGCGAGAGTGGTGGAGGGGGCTAGTGGGATTGATGG
AATGGAAGAAACCGAGAGGAGAAGGAGGCGGGGTAGGGAGGGAGGGAGGA
AGGGAGGGGGGGAGGATCATTACTGAGTGAGAGCTGCCAAATGGCGGGGA
CGACAAACGCCACTATAGCCAGCAATATCGACAGCAGCAGCAATAGCAGC
AGTAACAGCTCCAGTAATAGCACTGGCAGCAGCAGCAGCAACAGCAGCAC
TGGCACTAGCAGCAAAAATAAAAGGATGGCCTGGCGCGCAGGAGACACCC
ACGGTTCTCGGTCCAAAGACGTTTTTGCCCTCCTCATACCCAACAACCAC
CCCCAACCCGAACCAGCCGCCTCGAGGTCCTCAAGGGCCTTTCCCTACGC
TTCGTCGCCGCCGAAGGCAAAGGCTGGGGATGTCCTCTACCTCCTGCACA
CGTTCCCACCACCAGCGACGCCAACCATGTTTTTAAGTACCTTGGTGCTG
CGTTTGTTGACCCATTTTCGGGTGCTATCAAGACTCAACGAGGCCTTACT
ATCTCCCTGTTGGTGCTTGATGAGGATGGAGAAGAATACGGGAGATTGGA
TAACCCTCGTCCATGGCCCGGGGGGGGCGTGTATTTTTTTGAGGGTGTGA
CTCTCCCCAAGAAGGGGCTGTGGACGTTGCGGTTGACAGCTAAGGAGACG
ATACCCGGAGGAAGGGGAGGGGTAGGAAGGAGGGAAGATGGGGAGATGGT
GCTGCAGGGGGAGGTTGTGGGTCAGCGGGCAGTCATCCTGTTGGGAAACG
GTGGTCGAAAAGAGAAGGAGGAGGAAGGAAGGGAGGAAGGGGTGAAGGCC
AACGTCACCTCCACCAAAAGCACGACGGACGACAAGGAGAACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTCCTTTCCTTTTAAACC
TGCCCAAGGGCGTCTCTCTCGGCCTGGGGGATGCACCTGTAATTGCTCTG
GATTACTTAGGCCCCCGTTTGAACACCGGGAGGAAAAGCACTTACGGCAG
CAGCAACAACAGCAGCAGTACGACAAACACCTCTCTCAATAGCTGCAGCA
CCAGCAGCACCAGCAGCAGCAGCGGCAGTCATGGGAAGAGCAAATCACTG
TTGCCTCGTCGTGCATGCAACAGAGAGGACTTGATTTTGGCGTTAGCGTT
GACGCAAGTACACGAGGACGAGGAAGGCGGAGGGAGGGAGGGAGGGGCAG
GAGGGAGGAAGCGGAAGGCAGATGGAGGCGGAGGAGGGGAGGGAGGAGGA
GGAGGAGGAGGAAAAGGAAGGGGGGAGATAATGGCGGCTCAGAAGGCGCT
GTTAAAGAAGTGGAAAAATGTGCCGCGGGATTGTCGATGGATGGAGTGGG
AGGCATTGAGGGAAGGGAGGACGGGTGTAGTGTTTGAAAGGCGAGAGTGG
TGGAGGGGGCTAGTGGGATTGATGGAATGGAAGAAACCGAGAGGAGAAGG
AGGCGGGGTAGGGAGGGAGGGAGGAAGGGAGGGGGGGAGGATCATTACTG
AGTGAGAGCTGCCAAATGGCGGGGACGACAAACGCCACTATAGCCAGCAA
TATCGACAGCAGCAGCAATAGCAGCAGTAACAGCTCCAGTAATAGCACTG
GCAGCAGCAGCAGCAACAGCAGCACTGGCACTAGCAGCAAAAATAAAAGG
ATGGCCTGGCGCGCAGGAGACACCCACGGTTCTCGGTCCAAAGACGTTTT
TGCCCTCCTCATACCCAACAACCACCCCCAACCCGAACCAGCCGCCTCGA
GGTCCTCAAGGGCCTTTCCCTACGCTTCGTCGCCGCCGAAGGCAAAGGCT
GGGGATGTCCTCTACCTCCTGCACACGTTCCCACCACCAGCGACGCCAAC
CATGTTTTTAAGTACCTTGGTGCTGCGTTTGTTGACCCATTTTCGGGTGC
TATCAAGACTCAACGAGGCCTTACTATCTCCCTGTTGGTGCTTGATGAGG
ATGGAGAAGAATACGGGAGATTGGATAACCCTCGTCCATGGCCCGGGGGG
GGCGTGTATTTTTTTGAGGGTGTGACTCTCCCCAAGAAGGGGCTGTGGAC
GTTGCGGTTGACAGCTAAGGAGACGATACCCGGAGGAAGGGGAGGGGTAG
GAAGGAGGGAAGATGGGGAGATGGTGCTGCAGGGGGAGGTTGTGGGTCAG
CGGGCAGTCATCCTGTTGGGAAACGGTGGTCGAAAAGAGAAGGAGGAGGA
AGGAAGGGAGGAAGGGGTGAAGGCCAACGTCACCTCCACCAAAAGCACGA
CGGACGACAAGGAGAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTTTCCTTTCCTTTTAAACCTGCCCAAGGGCGTCTCTCTCGGCCT
GGGGGATGCACCTGTAATTGCTCTGGATTACTTAGGCCCCCGTTTGAACA
CCGGGAGGAAAAGCACTTACGGCAGCAGCAACAACAGCAGCAGTACGACA
AACACCTCTCTCAATAGCTGCAGCACCAGCAGCACCAGCAGCAGCAGCGG
CAGTCATGGGAAGAGCAAATCACTGTTGCCTCGTCGTGCATGCAACAGAG
AGGACTTGATTTTGGCGTTAGCGTTGACGCAAGTACACGAGGACGAGGAA
GGCGGAGGGAGGGAGGGAGGGGCAGGAGGGAGGAAGCGGAAGGCAGATGG
AGGCGGAGGAGGGGAGGGAGGAGGAGGAGGAGGAGGAAAAGGAAGGGGGG
AGATAATGGCGGCTCAGAAGGCGCTGTTAAAGAAGTGGAAAAATGTGCCG
CGGGATTGTCGATGGATGGAGTGGGAGGCATTGAGGGAAGGGAGGACGGG
TGTAGTGTTTGAAAGGCGAGAGTGGTGGAGGGGGCTAGTGGGATTGATGG
AATGGAAGAAACCGAGAGGAGAAGGAGGCGGGGTAGGGAGGGAGGGAGGA
AGGGAGGGGGGGAGGATCATTACTGAGTGAGAGCTGCCAAATGGCGGGGA
CGACAAACGCCACTATAGCCAGCAATATCGACAGCAGCAGCAATAGCAGC
AGTAACAGCTCCAGTAATAGCACTGGCAGCAGCAGCAGCAACAGCAGCAC
TGGCACTAGCAGCAAAAATAAAAGGATGGCCTGGCGCGCAGGAGACACCC
ACGGTTCTCGGTCCAAAGACGTTTT back to top
|