jgi.p|Nanoce1779_2|604535, mRNA_8927 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604535
Unique Name	mRNA_8927
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1152
Alignment location	scaffold_29:237372..238523 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604621
Track	FilteredModels2
ProteinId	604535

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:237372..238523 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604535	gene_8927	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604535	mRNA_8927-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8927	CDS_8927	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:237372..238523+
coding sequence from alignment at scaffold_29:237372..238523+

mRNA sequence

>mRNA_8927 ID=mRNA_8927|Name=jgi.p|Nanoce1779_2|604535|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp
TCTTAATCTTGCTTCTTCAGGCCTTTTTTTCTTTTCTCGATTCGATCCGT
TTGGGAAATGGAGTCTGGAGCTCTGTGTCAGGGGTGGCAAAGACGCATTA
ACACGTCATATATGAGATTGGGGGACGGGTTACAACCTACCCATCTTAGC
GGTGAACATGACACATCGGCGAAGAACCGTTGTGATAGGCAATATGTCTC
TTAGGGGGCACGATAACACAAGATCAGTAAGAAGGGAAGGGCACCTTGCT
TGGGCCCTGGCCGGGCCTACTTTGTTTGTGACAGGACGAAAGAAAGGATG
CGAAAAAGAAAAATGCTGAGCAGGGGCTTCTCCATGCAAATAACATACAG
GCAATATGAACAAGGCCTTGGGCGTGGCTACGCGAGGCCATTGCTGGCAA
TCCTTTCGATCTTTGCTACTTGGCTAAGACCCAGATTGGATCCGACAAAC
TTTTGCACATTTAAGACCTTTTGCCATAGCTTGAAATCTTATACTGTCCT
CTGTTGGGTCGGCGCCTCAGGGTTTTCGCAAATATCATGTCTTGACCACA
TTCTTGACCTCTCGTGGTGCATGGTTTTCCGTCAAATAATTGCATATTCA
CAGACTTGGAAAAATGGAACAAGAGGACGGACAGCCAGAAGGTGGAGAAA
CGTGTCTTGTAAACACCTGATAAATTTCGTATTGACCTGTTGGTGTTTCT
CGGGAGTAGAAGAGCAAGTGTCCGTTGGGGTCGCGACGACAGTGAAAGTG
ATGATGCATGCGACTGCCGCCGACGCGTTTTTCAGAGTAAAATAGTCTCT
TGGAATTCTCAGTGCGTCCGACGGGATGCATCAGTTTTTTTTCTCTCGTC
TTTGGGCTGCGTTTAGTGATCGGGGAAGGGCTTTCACCACTTGGCGAGGG
ACGAGTCGCCCGCTTTATTCATTTTATTTTATGCTACACAATGAGCCTGA
CTTTCCTATTGGCATCGAGGCTATTAAAAATTACACGCAAAACAAGACTG
AAACTATAAGTACTATCTGTATTTCGCTCTCCTACTGAACAATCTTTGTA
GGGGGGCATATATTTTCACAGTCTCCCACGTGATCATTTCATCACCTACA
GGGTGGTAGGACCTCGAAAACTGAATAGATGAGTAGCTTATATGTTATTG
AT

protein sequence of jgi.p|Nanoce1779_2|604535

>mRNA_8927-protein ID=mRNA_8927-protein|Name=jgi.p|Nanoce1779_2|604535|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MRKRKMLSRGFSMQITYRQYEQGLGRGYARPLLAILSIFATWLRPRLDPT
NFCTFKTFCHSLKSYTVLCWVGASGFSQISCLDHILDLSWCMVFRQIIAY
SQTWKNGTRGRTARRWRNVSCKHLINFVLTCWCFSGVEEQVSVGVATTVK
VMMHATAADAFFRVK*

mRNA from alignment at scaffold_29:237372..238523+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8927 ID=mRNA_8927|Name=jgi.p|Nanoce1779_2|604535|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp|location=Sequence derived from alignment at scaffold_29:237372..238523+ (Nannochloropsis oceanica)
TCTTAATCTTGCTTCTTCAGGCCTTTTTTTCTTTTCTCGATTCGATCCGT
TTGGGAAATGGAGTCTGGAGCTCTGTGTCAGGGGTGGCAAAGACGCATTA
ACACGTCATATATGAGATTGGGGGACGGGTTACAACCTACCCATCTTAGC
GGTGAACATGACACATCGGCGAAGAACCGTTGTGATAGGCAATATGTCTC
TTAGGGGGCACGATAACACAAGATCAGTAAGAAGGGAAGGGCACCTTGCT
TGGGCCCTGGCCGGGCCTACTTTGTTTGTGACAGGACGAAAGAAAGGATG
CGAAAAAGAAAAATGCTGAGCAGGGGCTTCTCCATGCAAATAACATACAG
GCAATATGAACAAGGCCTTGGGCGTGGCTACGCGAGGCCATTGCTGGCAA
TCCTTTCGATCTTTGCTACTTGGCTAAGACCCAGATTGGATCCGACAAAC
TTTTGCACATTTAAGACCTTTTGCCATAGCTTGAAATCTTATACTGTCCT
CTGTTGGGTCGGCGCCTCAGGGTTTTCGCAAATATCATGTCTTGACCACA
TTCTTGACCTCTCGTGGTGCATGGTTTTCCGTCAAATAATTGCATATTCA
CAGACTTGGAAAAATGGAACAAGAGGACGGACAGCCAGAAGGTGGAGAAA
CGTGTCTTGTAAACACCTGATAAATTTCGTATTGACCTGTTGGTGTTTCT
CGGGAGTAGAAGAGCAAGTGTCCGTTGGGGTCGCGACGACAGTGAAAGTG
ATGATGCATGCGACTGCCGCCGACGCGTTTTTCAGAGTAAAATAGTCTCT
TGGAATTCTCAGTGCGTCCGACGGGATGCATCAGTTTTTTTTCTCTCGTC
TTTGGGCTGCGTTTAGTGATCGGGGAAGGGCTTTCACCACTTGGCGAGGG
ACGAGTCGCCCGCTTTATTCATTTTATTTTATGCTACACAATGAGCCTGA
CTTTCCTATTGGCATCGAGGCTATTAAAAATTACACGCAAAACAAGACTG
AAACTATAAGTACTATCTGTATTTCGCTCTCCTACTGAACAATCTTTGTA
GGGGGGCATATATTTTCACAGTCTCCCACGTGATCATTTCATCACCTACA
GGGTGGTAGGACCTCGAAAACTGAATAGATGAGTAGCTTATATGTTATTG
AT

Coding sequence (CDS) from alignment at scaffold_29:237372..238523+

>mRNA_8927 ID=mRNA_8927|Name=jgi.p|Nanoce1779_2|604535|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_29:237372..238523+ (Nannochloropsis oceanica)
ATGCGAAAAAGAAAAATGCTGAGCAGGGGCTTCTCCATGCAAATAACATA
CAGGCAATATGAACAAGGCCTTGGGCGTGGCTACGCGAGGCCATTGCTGG
CAATCCTTTCGATCTTTGCTACTTGGCTAAGACCCAGATTGGATCCGACA
AACTTTTGCACATTTAAGACCTTTTGCCATAGCTTGAAATCTTATACTGT
CCTCTGTTGGGTCGGCGCCTCAGGGTTTTCGCAAATATCATGTCTTGACC
ACATTCTTGACCTCTCGTGGTGCATGGTTTTCCGTCAAATAATTGCATAT
TCACAGACTTGGAAAAATGGAACAAGAGGACGGACAGCCAGAAGGTGGAG
AAACGTGTCTTGTAAACACCTGATAAATTTCGTATTGACCTGTTGGTGTT
TCTCGGGAGTAGAAGAGCAAGTGTCCGTTGGGGTCGCGACGACAGTGAAA
GTGATGATGCATGCGACTGCCGCCGACGCGTTTTTCAGAGTAAAATAG

Synonyms

Publications