jgi.p|Nanoce1779_2|568892, mRNA_8926 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568892
Unique NamemRNA_8926
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length357
Alignment locationscaffold_29:236203..236559 +

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Properties
Property NameValue
TranscriptId568978
TrackFilteredModels2
ProteinId568892
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:236203..236559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568892gene_8926Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568892mRNA_8926-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8926CDS_8926Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8926 ID=mRNA_8926|Name=jgi.p|Nanoce1779_2|568892|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGCTGCTACTTTTCTTCTTGTCCCTGCTGCCGCTGCTGTTGGTGCCGCT
GGCGCTGCCTAAGGAGGTAGTGCTGGTGGTGGTGTTGCTGCTGACAGTGG
TGCCGCCGCCTGGATCGACTAGACCACTCCCTCCACGCAGCAAAAAGCTC
GAGGCACCGCCGACCTCCGCTGAGAGCTGGTTACCCATATGGCTTCCTAG
TCACGGTTGCTGCCTGGCCTCAGTAGGCTTGCTTAGAAAAGAGGGGGCTG
GAAATTCCAGGACCGGAGCGCAGAGGAATGATTTTGAATGGATAGACTTC
CTCGCGGGTCCTTCGGGTTTGCTCCACTACTCCCTCTCTGTGTGTATGAG
TATATGA
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protein sequence of jgi.p|Nanoce1779_2|568892

>mRNA_8926-protein ID=mRNA_8926-protein|Name=jgi.p|Nanoce1779_2|568892|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MLLLFFLSLLPLLLVPLALPKEVVLVVVLLLTVVPPPGSTRPLPPRSKKL
EAPPTSAESWLPIWLPSHGCCLASVGLLRKEGAGNSRTGAQRNDFEWIDF
LAGPSGLLHYSLSVCMSI*
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mRNA from alignment at scaffold_29:236203..236559+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8926 ID=mRNA_8926|Name=jgi.p|Nanoce1779_2|568892|organism=Nannochloropsis oceanica|type=mRNA|length=357bp|location=Sequence derived from alignment at scaffold_29:236203..236559+ (Nannochloropsis oceanica)
ATGCTGCTACTTTTCTTCTTGTCCCTGCTGCCGCTGCTGTTGGTGCCGCT
GGCGCTGCCTAAGGAGGTAGTGCTGGTGGTGGTGTTGCTGCTGACAGTGG
TGCCGCCGCCTGGATCGACTAGACCACTCCCTCCACGCAGCAAAAAGCTC
GAGGCACCGCCGACCTCCGCTGAGAGCTGGTTACCCATATGGCTTCCTAG
TCACGGTTGCTGCCTGGCCTCAGTAGGCTTGCTTAGAAAAGAGGGGGCTG
GAAATTCCAGGACCGGAGCGCAGAGGAATGATTTTGAATGGATAGACTTC
CTCGCGGGTCCTTCGGGTTTGCTCCACTACTCCCTCTCTGTGTGTATGAG
TATATGA
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Coding sequence (CDS) from alignment at scaffold_29:236203..236559+

>mRNA_8926 ID=mRNA_8926|Name=jgi.p|Nanoce1779_2|568892|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_29:236203..236559+ (Nannochloropsis oceanica)
ATGCTGCTACTTTTCTTCTTGTCCCTGCTGCCGCTGCTGTTGGTGCCGCT
GGCGCTGCCTAAGGAGGTAGTGCTGGTGGTGGTGTTGCTGCTGACAGTGG
TGCCGCCGCCTGGATCGACTAGACCACTCCCTCCACGCAGCAAAAAGCTC
GAGGCACCGCCGACCTCCGCTGAGAGCTGGTTACCCATATGGCTTCCTAG
TCACGGTTGCTGCCTGGCCTCAGTAGGCTTGCTTAGAAAAGAGGGGGCTG
GAAATTCCAGGACCGGAGCGCAGAGGAATGATTTTGAATGGATAGACTTC
CTCGCGGGTCCTTCGGGTTTGCTCCACTACTCCCTCTCTGTGTGTATGAG
TATATGA
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Synonyms
Publications