jgi.p|Nanoce1779_2|604531, mRNA_8925 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604531
Unique NamemRNA_8925
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length521
Alignment locationscaffold_29:233821..234341 -

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Properties
Property NameValue
TranscriptId604617
TrackFilteredModels2
ProteinId604531
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:233821..234341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604531gene_8925Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8925CDS_8925Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604531mRNA_8925-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8925 ID=mRNA_8925|Name=jgi.p|Nanoce1779_2|604531|organism=Nannochloropsis oceanica|type=mRNA|length=521bp
ATGTCGCCATCCGGCCTTTCCCTCCCCCAGCCTGACCACCTCCTTGTCCG
CTGTGCCACGGCGGCGCATAGCCACGCCCTCCTCACCCTTGGCTTCTCTT
CTGGATGCTGGGCGTGGGAGTTTCAACTCGCCGAGGACATCACCAACGAC
GAGTCCATTTGCCTGGGCGCAGCCGTGAAGCCCTTGACGTCGTCCTCCTA
CAACTCCTCCCCCTCCCTGTGGATGTACCGGTGTTACAATGGCAATCTCT
ACCGACGCGGAGGGCAAGTGTCGGGTGTGAGTAAGGCCCGAATCCACCCG
CAGGATGTGGTCAGAATCGAGCTGGATCACGAGAAACGCACGCTGAGCTA
TTCCATCAATGGGGACAAGGACCAGGGCGTGTGTTTCTCGGAGGTGACGG
GAGAAATCTTCCCGGCTGTGGCCTTTTATGGCGCGAACCGGGCAGTGAGG
TTGCTGGGGATGGAGAGCCTCGGCCCGGGGATCCGGCCCGGGGTTAAGTG
GTACCTCCCAAATGATGCCTG
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protein sequence of jgi.p|Nanoce1779_2|604531

>mRNA_8925-protein ID=mRNA_8925-protein|Name=jgi.p|Nanoce1779_2|604531|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MSPSGLSLPQPDHLLVRCATAAHSHALLTLGFSSGCWAWEFQLAEDITND
ESICLGAAVKPLTSSSYNSSPSLWMYRCYNGNLYRRGGQVSGVSKARIHP
QDVVRIELDHEKRTLSYSINGDKDQGVCFSEVTGEIFPAVAFYGANRAVR
LLGMESLGPGIRPGVKWYLPNDA
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mRNA from alignment at scaffold_29:233821..234341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8925 ID=mRNA_8925|Name=jgi.p|Nanoce1779_2|604531|organism=Nannochloropsis oceanica|type=mRNA|length=521bp|location=Sequence derived from alignment at scaffold_29:233821..234341- (Nannochloropsis oceanica)
ATGTCGCCATCCGGCCTTTCCCTCCCCCAGCCTGACCACCTCCTTGTCCG
CTGTGCCACGGCGGCGCATAGCCACGCCCTCCTCACCCTTGGCTTCTCTT
CTGGATGCTGGGCGTGGGAGTTTCAACTCGCCGAGGACATCACCAACGAC
GAGTCCATTTGCCTGGGCGCAGCCGTGAAGCCCTTGACGTCGTCCTCCTA
CAACTCCTCCCCCTCCCTGTGGATGTACCGGTGTTACAATGGCAATCTCT
ACCGACGCGGAGGGCAAGTGTCGGGTGTGAGTAAGGCCCGAATCCACCCG
CAGGATGTGGTCAGAATCGAGCTGGATCACGAGAAACGCACGCTGAGCTA
TTCCATCAATGGGGACAAGGACCAGGGCGTGTGTTTCTCGGAGGTGACGG
GAGAAATCTTCCCGGCTGTGGCCTTTTATGGCGCGAACCGGGCAGTGAGG
TTGCTGGGGATGGAGAGCCTCGGCCCGGGGATCCGGCCCGGGGTTAAGTG
GTACCTCCCAAATGATGCCTG
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Coding sequence (CDS) from alignment at scaffold_29:233821..234341-

>mRNA_8925 ID=mRNA_8925|Name=jgi.p|Nanoce1779_2|604531|organism=Nannochloropsis oceanica|type=CDS|length=521bp|location=Sequence derived from alignment at scaffold_29:233821..234341- (Nannochloropsis oceanica)
ATGTCGCCATCCGGCCTTTCCCTCCCCCAGCCTGACCACCTCCTTGTCCG
CTGTGCCACGGCGGCGCATAGCCACGCCCTCCTCACCCTTGGCTTCTCTT
CTGGATGCTGGGCGTGGGAGTTTCAACTCGCCGAGGACATCACCAACGAC
GAGTCCATTTGCCTGGGCGCAGCCGTGAAGCCCTTGACGTCGTCCTCCTA
CAACTCCTCCCCCTCCCTGTGGATGTACCGGTGTTACAATGGCAATCTCT
ACCGACGCGGAGGGCAAGTGTCGGGTGTGAGTAAGGCCCGAATCCACCCG
CAGGATGTGGTCAGAATCGAGCTGGATCACGAGAAACGCACGCTGAGCTA
TTCCATCAATGGGGACAAGGACCAGGGCGTGTGTTTCTCGGAGGTGACGG
GAGAAATCTTCCCGGCTGTGGCCTTTTATGGCGCGAACCGGGCAGTGAGG
TTGCTGGGGATGGAGAGCCTCGGCCCGGGGATCCGGCCCGGGGTTAAGTG
GTACCTCCCAAATGATGCCTG
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Synonyms
Publications