jgi.p|Nanoce1779_2|568888, mRNA_8922 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568888
Unique Name	mRNA_8922
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1644
Alignment location	scaffold_29:212760..214403 -

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Properties


Property Name	Value
TranscriptId	568974
Track	FilteredModels2
ProteinId	568888

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:212760..214403 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568888	gene_8922	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8922	CDS_8922	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568888	mRNA_8922-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:212760..214403-
coding sequence from alignment at scaffold_29:212760..214403-

mRNA sequence

>mRNA_8922 ID=mRNA_8922|Name=jgi.p|Nanoce1779_2|568888|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
ATGGGCCCGAATGCCGGGGAAGAAGCATGGGGCTTTGGTTTCACAGTCCT
GGCGAAAAAAATTGCTCCGAGTCATCGCCTGATGAAACTGATGAGACAGA
TTCAGGACTTTAACAGCATCGCGTGTTTTCCTACGGATTGGTCGGTAGAG
CAAGACGTGGCACTGGTCGAATGGCTGAACACAGCGAGCGAAGCACTGGG
TAGGCCTTCCACTGACGTCTCTCCATTTGACTTCCGTCACGGTGGAGGAG
AGTCTTCGGTGGGGCTACAGCTGGACAACTGTCCCATGCCAGCTATCTAC
CTTCGCATTGCTCTCCTCCAAGGCTTCAACCGACGCCTCCAACTCCTACT
CCCCCTGATTGACCTTGGCAATGCCTGCCGACACAGTCTGGGTGCCAAGC
TCCGAGCATTAGGGCATCTGGTGCTGCGAGACGTGAAGATGGCTATTGTA
GAGGCAGGGAAGGAACGGACGCAGGGCTCGGGTGGTAATACTCTGACGAT
TACGTTGGATAACTTTGCGGCATCGCGATCAATGGAAGCGGCAGAGCGGG
ATATCAGCACGAGTCGGTGTATTTTTGTGCAAGCTTTCCGCGCTTTGCAC
CATAAGGACCCCAAGGTCTTGCGTTCGTGTTGGGACGGTGATCGTGTGTT
CCAAGTGACTTTCCGAGGGGAAAGTGGCTCGGATGCTGGTGGTGTGTTTC
GCGAGGGGATGTCGCGGGTGGTGGAGGATCTGTATTTGCCTGATGTCTTA
AACCTCTTGATTCCCTGCCCGAATGCACAGCATGGCTTGCCGACCAACAT
CGATAAGTTCCTCCCCAACCCCCACCTGGCGACCTGTCCTTTGGCTTTGG
ACATGTTTGAGTTTGTTGGAAAGTTGATGGGGATGTCCCTGCGAGCAAAT
CTTTGCTTGCCCTTCCATTTTCCTTCCTTGGTCTGGAAGCGCCTCTTGGG
GCAGGAGCTGTCTCGGAGTGACATGGAGGCAGTAGACACTTTGACTTGCC
GATTACTGGACTCAGTGCGTGGGTGTGATGATGAAGAGGAGTTCGAGGGG
AAGTTTGGTGGGAGTCTGACCTTCGTGGCGACGGGGCATGATGGGGAAGA
GGTGGAGTTGGTTCCGGGGGGGGCGACAGAGGATGTGACGTTTTCTTCTC
GAGAAGCCTATTGCGACTTATTGTCTGAGAGGCATTTGCACGAGTCTGAC
GCGCAGATTGCGGCGATTGCCCGGGGACTGTATGCGGTGGTGGCCCGCGA
TACGCTCTTGCTGCTGACATGGCATGAATTTGAGACGTTGGTGTGTGGGT
CTCCGACATTTGACATGGACTTTTGGAGGGCGCACACGACATACTCGGGG
TATACGAATGATGACCCTACGATTAAATTGTTTTGGAAGGTGTTGGGATC
ATTGAGTCAGGAAGAGCAGAGCGGATTTGTCCGTTTCGCCTGGGGTCGGT
CGCGGCTTCCACCAAAGAGTGCGTGGTACAAGAATATGCAAATTTCAAGG
AGGAACGCAGGAGAAGACTCTTTGCCAGCAAGTCATACGTGTTTCTTTTC
CATTGAGCTGCCGCCTTATAAGAGTGAAGCAGCGATGCGAAAGGGCTTAT
TGACGGCCATCACTTATGGTGCTGTCGGGATTTTGAATACGTAA

protein sequence of jgi.p|Nanoce1779_2|568888

>mRNA_8922-protein ID=mRNA_8922-protein|Name=jgi.p|Nanoce1779_2|568888|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MGPNAGEEAWGFGFTVLAKKIAPSHRLMKLMRQIQDFNSIACFPTDWSVE
QDVALVEWLNTASEALGRPSTDVSPFDFRHGGGESSVGLQLDNCPMPAIY
LRIALLQGFNRRLQLLLPLIDLGNACRHSLGAKLRALGHLVLRDVKMAIV
EAGKERTQGSGGNTLTITLDNFAASRSMEAAERDISTSRCIFVQAFRALH
HKDPKVLRSCWDGDRVFQVTFRGESGSDAGGVFREGMSRVVEDLYLPDVL
NLLIPCPNAQHGLPTNIDKFLPNPHLATCPLALDMFEFVGKLMGMSLRAN
LCLPFHFPSLVWKRLLGQELSRSDMEAVDTLTCRLLDSVRGCDDEEEFEG
KFGGSLTFVATGHDGEEVELVPGGATEDVTFSSREAYCDLLSERHLHESD
AQIAAIARGLYAVVARDTLLLLTWHEFETLVCGSPTFDMDFWRAHTTYSG
YTNDDPTIKLFWKVLGSLSQEEQSGFVRFAWGRSRLPPKSAWYKNMQISR
RNAGEDSLPASHTCFFSIELPPYKSEAAMRKGLLTAITYGAVGILNT*

mRNA from alignment at scaffold_29:212760..214403-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8922 ID=mRNA_8922|Name=jgi.p|Nanoce1779_2|568888|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_29:212760..214403- (Nannochloropsis oceanica)
ATGGGCCCGAATGCCGGGGAAGAAGCATGGGGCTTTGGTTTCACAGTCCT
GGCGAAAAAAATTGCTCCGAGTCATCGCCTGATGAAACTGATGAGACAGA
TTCAGGACTTTAACAGCATCGCGTGTTTTCCTACGGATTGGTCGGTAGAG
CAAGACGTGGCACTGGTCGAATGGCTGAACACAGCGAGCGAAGCACTGGG
TAGGCCTTCCACTGACGTCTCTCCATTTGACTTCCGTCACGGTGGAGGAG
AGTCTTCGGTGGGGCTACAGCTGGACAACTGTCCCATGCCAGCTATCTAC
CTTCGCATTGCTCTCCTCCAAGGCTTCAACCGACGCCTCCAACTCCTACT
CCCCCTGATTGACCTTGGCAATGCCTGCCGACACAGTCTGGGTGCCAAGC
TCCGAGCATTAGGGCATCTGGTGCTGCGAGACGTGAAGATGGCTATTGTA
GAGGCAGGGAAGGAACGGACGCAGGGCTCGGGTGGTAATACTCTGACGAT
TACGTTGGATAACTTTGCGGCATCGCGATCAATGGAAGCGGCAGAGCGGG
ATATCAGCACGAGTCGGTGTATTTTTGTGCAAGCTTTCCGCGCTTTGCAC
CATAAGGACCCCAAGGTCTTGCGTTCGTGTTGGGACGGTGATCGTGTGTT
CCAAGTGACTTTCCGAGGGGAAAGTGGCTCGGATGCTGGTGGTGTGTTTC
GCGAGGGGATGTCGCGGGTGGTGGAGGATCTGTATTTGCCTGATGTCTTA
AACCTCTTGATTCCCTGCCCGAATGCACAGCATGGCTTGCCGACCAACAT
CGATAAGTTCCTCCCCAACCCCCACCTGGCGACCTGTCCTTTGGCTTTGG
ACATGTTTGAGTTTGTTGGAAAGTTGATGGGGATGTCCCTGCGAGCAAAT
CTTTGCTTGCCCTTCCATTTTCCTTCCTTGGTCTGGAAGCGCCTCTTGGG
GCAGGAGCTGTCTCGGAGTGACATGGAGGCAGTAGACACTTTGACTTGCC
GATTACTGGACTCAGTGCGTGGGTGTGATGATGAAGAGGAGTTCGAGGGG
AAGTTTGGTGGGAGTCTGACCTTCGTGGCGACGGGGCATGATGGGGAAGA
GGTGGAGTTGGTTCCGGGGGGGGCGACAGAGGATGTGACGTTTTCTTCTC
GAGAAGCCTATTGCGACTTATTGTCTGAGAGGCATTTGCACGAGTCTGAC
GCGCAGATTGCGGCGATTGCCCGGGGACTGTATGCGGTGGTGGCCCGCGA
TACGCTCTTGCTGCTGACATGGCATGAATTTGAGACGTTGGTGTGTGGGT
CTCCGACATTTGACATGGACTTTTGGAGGGCGCACACGACATACTCGGGG
TATACGAATGATGACCCTACGATTAAATTGTTTTGGAAGGTGTTGGGATC
ATTGAGTCAGGAAGAGCAGAGCGGATTTGTCCGTTTCGCCTGGGGTCGGT
CGCGGCTTCCACCAAAGAGTGCGTGGTACAAGAATATGCAAATTTCAAGG
AGGAACGCAGGAGAAGACTCTTTGCCAGCAAGTCATACGTGTTTCTTTTC
CATTGAGCTGCCGCCTTATAAGAGTGAAGCAGCGATGCGAAAGGGCTTAT
TGACGGCCATCACTTATGGTGCTGTCGGGATTTTGAATACGTAA

Coding sequence (CDS) from alignment at scaffold_29:212760..214403-

>mRNA_8922 ID=mRNA_8922|Name=jgi.p|Nanoce1779_2|568888|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at scaffold_29:212760..214403- (Nannochloropsis oceanica)
ATGGGCCCGAATGCCGGGGAAGAAGCATGGGGCTTTGGTTTCACAGTCCT
GGCGAAAAAAATTGCTCCGAGTCATCGCCTGATGAAACTGATGAGACAGA
TTCAGGACTTTAACAGCATCGCGTGTTTTCCTACGGATTGGTCGGTAGAG
CAAGACGTGGCACTGGTCGAATGGCTGAACACAGCGAGCGAAGCACTGGG
TAGGCCTTCCACTGACGTCTCTCCATTTGACTTCCGTCACGGTGGAGGAG
AGTCTTCGGTGGGGCTACAGCTGGACAACTGTCCCATGCCAGCTATCTAC
CTTCGCATTGCTCTCCTCCAAGGCTTCAACCGACGCCTCCAACTCCTACT
CCCCCTGATTGACCTTGGCAATGCCTGCCGACACAGTCTGGGTGCCAAGC
TCCGAGCATTAGGGCATCTGGTGCTGCGAGACGTGAAGATGGCTATTGTA
GAGGCAGGGAAGGAACGGACGCAGGGCTCGGGTGGTAATACTCTGACGAT
TACGTTGGATAACTTTGCGGCATCGCGATCAATGGAAGCGGCAGAGCGGG
ATATCAGCACGAGTCGGTGTATTTTTGTGCAAGCTTTCCGCGCTTTGCAC
CATAAGGACCCCAAGGTCTTGCGTTCGTGTTGGGACGGTGATCGTGTGTT
CCAAGTGACTTTCCGAGGGGAAAGTGGCTCGGATGCTGGTGGTGTGTTTC
GCGAGGGGATGTCGCGGGTGGTGGAGGATCTGTATTTGCCTGATGTCTTA
AACCTCTTGATTCCCTGCCCGAATGCACAGCATGGCTTGCCGACCAACAT
CGATAAGTTCCTCCCCAACCCCCACCTGGCGACCTGTCCTTTGGCTTTGG
ACATGTTTGAGTTTGTTGGAAAGTTGATGGGGATGTCCCTGCGAGCAAAT
CTTTGCTTGCCCTTCCATTTTCCTTCCTTGGTCTGGAAGCGCCTCTTGGG
GCAGGAGCTGTCTCGGAGTGACATGGAGGCAGTAGACACTTTGACTTGCC
GATTACTGGACTCAGTGCGTGGGTGTGATGATGAAGAGGAGTTCGAGGGG
AAGTTTGGTGGGAGTCTGACCTTCGTGGCGACGGGGCATGATGGGGAAGA
GGTGGAGTTGGTTCCGGGGGGGGCGACAGAGGATGTGACGTTTTCTTCTC
GAGAAGCCTATTGCGACTTATTGTCTGAGAGGCATTTGCACGAGTCTGAC
GCGCAGATTGCGGCGATTGCCCGGGGACTGTATGCGGTGGTGGCCCGCGA
TACGCTCTTGCTGCTGACATGGCATGAATTTGAGACGTTGGTGTGTGGGT
CTCCGACATTTGACATGGACTTTTGGAGGGCGCACACGACATACTCGGGG
TATACGAATGATGACCCTACGATTAAATTGTTTTGGAAGGTGTTGGGATC
ATTGAGTCAGGAAGAGCAGAGCGGATTTGTCCGTTTCGCCTGGGGTCGGT
CGCGGCTTCCACCAAAGAGTGCGTGGTACAAGAATATGCAAATTTCAAGG
AGGAACGCAGGAGAAGACTCTTTGCCAGCAAGTCATACGTGTTTCTTTTC
CATTGAGCTGCCGCCTTATAAGAGTGAAGCAGCGATGCGAAAGGGCTTAT
TGACGGCCATCACTTATGGTGCTGTCGGGATTTTGAATACGTAA

Synonyms

Publications