jgi.p|Nanoce1779_2|604505, mRNA_8921 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604505
Unique NamemRNA_8921
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length676
Alignment locationscaffold_29:211587..212262 +

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Properties
Property NameValue
TranscriptId604591
TrackFilteredModels2
ProteinId604505
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:211587..212262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604505gene_8921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604505mRNA_8921-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8921CDS_8921Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8921 ID=mRNA_8921|Name=jgi.p|Nanoce1779_2|604505|organism=Nannochloropsis oceanica|type=mRNA|length=676bp
ACAGGCATCACCACAGCGTCCTCCGAATGCCGGTGCCAGCTGCGCGTCGC
TTCTTATGTCTCCTCCTATTACTTATTTTCAGCCTCCTCCCTTTTACTAC
CACGGGCGCCGGGAGTACCTCCTTCTCCTCTTCCTCGTCCTCCGTCTTTC
TGTCCCTCAATCATATTAGCCGCGAGTGCCGTGACCCCGAAACCATGGCC
GACTTCTACACGAGCCTGCTCGGCTTCTCCCGTGTCCCTGCGCCTCCTTT
TCCCTTTGGAGTAATTTGGTTGTCCCATCCGAGCGGGCTTACCATGCACC
TCATCGAAGGCACAGCCGAGTATCGACTTGTCGAAGGCCCCGCGCGCGAT
GCTTCGCGTGGGGAGTGGAGCAAGGAGGTGTTTGTGCAAGGCAAGTTTGA
TCCGATCCACATCCGGCGGGGGCATCACCTGGCGTGGAATGTGAGGGATT
TGGAGCAGGTAAAACGGGCGCTCGAGGCTAAAGGCATTCCTTTCGCTTTG
TCTCAGGTACCCGGCACAAATACAAAACAATTGTTTGCCTTTGATCCAGA
GGGAAATGGGTTGGAGTGCGTGTACAACCCACCGCCGGAAGAGGAACTAT
AAGGAAAAGAAAACGACGAAAGACACAAGACAAAAGAGGAGACACCAGCA
GAGAATAAAAAGACGAGCATTGTCCA
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protein sequence of jgi.p|Nanoce1779_2|604505

>mRNA_8921-protein ID=mRNA_8921-protein|Name=jgi.p|Nanoce1779_2|604505|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPVPAARRFLCLLLLLIFSLLPFTTTGAGSTSFSSSSSSVFLSLNHISRE
CRDPETMADFYTSLLGFSRVPAPPFPFGVIWLSHPSGLTMHLIEGTAEYR
LVEGPARDASRGEWSKEVFVQGKFDPIHIRRGHHLAWNVRDLEQVKRALE
AKGIPFALSQVPGTNTKQLFAFDPEGNGLECVYNPPPEEEL*
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mRNA from alignment at scaffold_29:211587..212262+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8921 ID=mRNA_8921|Name=jgi.p|Nanoce1779_2|604505|organism=Nannochloropsis oceanica|type=mRNA|length=676bp|location=Sequence derived from alignment at scaffold_29:211587..212262+ (Nannochloropsis oceanica)
ACAGGCATCACCACAGCGTCCTCCGAATGCCGGTGCCAGCTGCGCGTCGC
TTCTTATGTCTCCTCCTATTACTTATTTTCAGCCTCCTCCCTTTTACTAC
CACGGGCGCCGGGAGTACCTCCTTCTCCTCTTCCTCGTCCTCCGTCTTTC
TGTCCCTCAATCATATTAGCCGCGAGTGCCGTGACCCCGAAACCATGGCC
GACTTCTACACGAGCCTGCTCGGCTTCTCCCGTGTCCCTGCGCCTCCTTT
TCCCTTTGGAGTAATTTGGTTGTCCCATCCGAGCGGGCTTACCATGCACC
TCATCGAAGGCACAGCCGAGTATCGACTTGTCGAAGGCCCCGCGCGCGAT
GCTTCGCGTGGGGAGTGGAGCAAGGAGGTGTTTGTGCAAGGCAAGTTTGA
TCCGATCCACATCCGGCGGGGGCATCACCTGGCGTGGAATGTGAGGGATT
TGGAGCAGGTAAAACGGGCGCTCGAGGCTAAAGGCATTCCTTTCGCTTTG
TCTCAGGTACCCGGCACAAATACAAAACAATTGTTTGCCTTTGATCCAGA
GGGAAATGGGTTGGAGTGCGTGTACAACCCACCGCCGGAAGAGGAACTAT
AAGGAAAAGAAAACGACGAAAGACACAAGACAAAAGAGGAGACACCAGCA
GAGAATAAAAAGACGAGCATTGTCCA
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Coding sequence (CDS) from alignment at scaffold_29:211587..212262+

>mRNA_8921 ID=mRNA_8921|Name=jgi.p|Nanoce1779_2|604505|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_29:211587..212262+ (Nannochloropsis oceanica)
ATGCCGGTGCCAGCTGCGCGTCGCTTCTTATGTCTCCTCCTATTACTTAT
TTTCAGCCTCCTCCCTTTTACTACCACGGGCGCCGGGAGTACCTCCTTCT
CCTCTTCCTCGTCCTCCGTCTTTCTGTCCCTCAATCATATTAGCCGCGAG
TGCCGTGACCCCGAAACCATGGCCGACTTCTACACGAGCCTGCTCGGCTT
CTCCCGTGTCCCTGCGCCTCCTTTTCCCTTTGGAGTAATTTGGTTGTCCC
ATCCGAGCGGGCTTACCATGCACCTCATCGAAGGCACAGCCGAGTATCGA
CTTGTCGAAGGCCCCGCGCGCGATGCTTCGCGTGGGGAGTGGAGCAAGGA
GGTGTTTGTGCAAGGCAAGTTTGATCCGATCCACATCCGGCGGGGGCATC
ACCTGGCGTGGAATGTGAGGGATTTGGAGCAGGTAAAACGGGCGCTCGAG
GCTAAAGGCATTCCTTTCGCTTTGTCTCAGGTACCCGGCACAAATACAAA
ACAATTGTTTGCCTTTGATCCAGAGGGAAATGGGTTGGAGTGCGTGTACA
ACCCACCGCCGGAAGAGGAACTATAA
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Synonyms
Publications