jgi.p|Nanoce1779_2|604503, mRNA_8920 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604503
Unique Name	mRNA_8920
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2868
Alignment location	scaffold_29:208337..211204 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604589
Track	FilteredModels2
ProteinId	604503

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:208337..211204 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604503	gene_8920	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604503	mRNA_8920-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8920	CDS_8920	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:208337..211204-
coding sequence from alignment at scaffold_29:208337..211204-

mRNA sequence

>mRNA_8920 ID=mRNA_8920|Name=jgi.p|Nanoce1779_2|604503|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp
ACAGGCTGCACCTTCGGGTTCACGTACAGGGCATAGCGGTGTCGCCGCGT
GACGCGCTGGGCGGCTCAATTGCTGGGCATTGATCGACTTTGCGTCTCTG
CCCTGCCACCACCTGCCCCCCCCAGCCAATTCAGCCAATTTGCCCCCGCC
TATCTCCTTCCTACTACTACTGTACCAGCCACACCACTAGCCCTCCAGCG
ATGGTGTCCTCTACGCCTATGTCTCCATCACCTCCTCTCTCACCTCCTCC
ACCTCCTTCGTCGTCTCTTCCCCGTCCCGGTAACACCATGCGCTCTTTAG
AAATGAATTATGAGCAGCACGACGAGGAGTCTGCTACTTGTACGTTGCTG
CGCAAACGAGACGGGAGCGCAGGTCCTCCGGTGCCTCTACTTTCCTCTCC
AAGCACCATCCATGCCATGGCTGGTCATGCTGCTTCTGTCGGCATGCTCG
GGAGCAGCAGCAATGTCCCCGCCCCGACGACAAGCAGCAGCACCACCACC
ACCGCCTCTAGCACTATGATCAATTCTGGCATGGTCTTTATTTCTGGTCA
TAACGCCGACTTTTTCCTCCTGGGTACTCAGGGGATTGGTGGCTCGTATG
CCAACGCCCGAATCTCCCTTGCATTGCGAGAGAAACGACCCGATATTTTG
ATCGTCCAGCTGTGCTCGACCCGGCTCCGTTTACTCCTCGACCCGGACGC
TTCCATCTGGTCCTACCTTGTCGATATCCATGCAGCCACGAGCAGCAGCA
GCAGCAGTAGTGGTAGTGGTAGCTTTGACCCTTACCATCCTTTCACAGGC
GTCGCGCCATTACTCAATTTTTCCCGATTTGCTTCCTTAGTGATCGCACG
AGTTGTCTGGAAGGCTCTTGCCCTCCTGGTAGGGGAACGGAGGACCATCG
CTCAGGAATACATCCACAGCATCCGCCTCGCTGCTGCCCCTCCTTCCCCT
GCGGATCACACGCGTGTCGTTTTGGGTGGTCGGGATTTAAACACAACCCT
CTCCCGAGCTTGTCACCTCTTGACGTTCCGCGAACGTCTCGCCCTTCTGG
CAGAGCTGGCATTGCTCTCCCTCCCTCCCTTCCTCCCCGCCCAAACGGCC
TGTAGATTGCTTGGCTTATCGCCTCCTTTTTTGCCCATTCCTCGAGGTTC
TGATGCTGTGGCAGAGGTGCTTCATTTCTTCTCGCAGCGCCATCCGTCCC
TGGCACCGTTGGAGAAGGAGGAGGGACTCTATGTCCTCTCATCGCTGCAA
AAACTGGACCAGCCACGCTTTGGGAGGGAGGACCGAGGGCTGAGGGGTCG
GGCGGTAGTGCTGGCAGTGGTAGGTGCGTCATTGTTGCCTTACTTACAGG
CCCATTGGGGGGAGGTGGTGGACCGACGGCAGTTGATGTCTCGCAGGGGA
GGCGGAGGGGGAGGACGAGGACGCGGGGGAGGGAGGGGTGGGGGGGGATG
GGCATGGTCATGCGTGGGGATGGCTGTGCTAGTAATCGTTGGTTTCATGC
TCTGTCAGGCGATTATTTTCTTATCGGCGCCACCACATAAGACGTTCGGA
GTGGTTAGAAGGGACAATGCGGGGATAGCTTTATGAGGATGAAAAGGCGG
AAGATAAGGAAGAATTAGATATAGGAATGGGGAGGGGAGGGAATGAAAGA
GGGAGAGATCTCTCGAGGGCCAGAAAGTAGTGGAGGGGAGAGATGTTAAC
GGGAGGAAAGAGAAATGAGAAAAGAATTCTGTACACGAGGGGTCTTATAA
ATAGGTAAACATGAGAAAAGGAGATAATGAGGTGGAGGAAAGATGTGCAT
AATATGTTAACTTGCTAGATATAAATCCCAATAATTGTTTCACCTTAGTC
AAATCATGTGGTGACGAGCATATGAGCCACTAGAAGCCTAACCGTAATAG
CAAGAGGTTCGATTTCATCCGACCATGTACCTTTATGGCCTTGCCCTCGC
TTTCGATGTATTTTATTTCGTCATTTCCTCTCACACTCCCTGGGGGGAAA
GGCTTGGACCATGAGCCTAAGTATCCGCCCTTTCCCATGGGGCCCGCTGA
GTACAACGAAGGGTAAAGAGATGGCAGAGGAGGCAGGAGAGGGAGGGAGA
GAGAAAGACGTCGGGACGGAAGTAGGGTGCGGTAGCAGTTTTTGTTTTTA
AAAAATACGGAGACAAACACAAGATTGTTCAAAATGTAATGATAGTCGAT
AGAAACGGGGGTAGATAGGTAAAATAGTCTCAAAAGGCGGAGGGTATGGA
TGCTGGCAGGGAGAGGGATTGTAATTTGAAATACATGTAGGAAGGCCAGG
CTGGAGGACGAGAACTGGAAAGTACGCCAAACGCACATCCAAGGATCTCG
CGAAGCCAAGCTCTGCAGTCTTTCTCCTTTAGTCAAAAGGGGAATCGTTT
CTTGCTGCTTGTACTGAGTATGTACGTTGGGTGGGGGAGGTTTTCCACGA
ATAACACATGACCAAGCAATCCCTCGATTTATACTCAACCCACCCACCAT
ATCGCGCCACGAACAGGCACTACACCTCGTCATGTCCTTTATGGGGGCTC
CACCGCCGCTGCCTGGGGAGCGGCCACTCAAAAAGCAGCATGGGCAACAC
CACCGTCATCGGCATTACCACCTCAATCCCTCGGGCAGCGGCGCTGAGTC
GCACTACGGTCCATCTTCTGCTGCTGCCATTTCGTCCTCCTCATCTCTGC
ACCTCTCACAACATAAGCACAAGAAGTATTTCAAGGCCTTGCAAGGCGTG
GGAGTCCACATTCACGACGGGGAGGACGGCGCCGGCGAGGAAGGGAGGAA
GGGGGGGAAGGAGGGAGGGGAAGCTGAGGGATTGACCGTCTATGGGTTGT
CCGTTGACGTGTTGAGAG

protein sequence of jgi.p|Nanoce1779_2|604503

>mRNA_8920-protein ID=mRNA_8920-protein|Name=jgi.p|Nanoce1779_2|604503|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MVSSTPMSPSPPLSPPPPPSSSLPRPGNTMRSLEMNYEQHDEESATCTLL
RKRDGSAGPPVPLLSSPSTIHAMAGHAASVGMLGSSSNVPAPTTSSSTTT
TASSTMINSGMVFISGHNADFFLLGTQGIGGSYANARISLALREKRPDIL
IVQLCSTRLRLLLDPDASIWSYLVDIHAATSSSSSSSGSGSFDPYHPFTG
VAPLLNFSRFASLVIARVVWKALALLVGERRTIAQEYIHSIRLAAAPPSP
ADHTRVVLGGRDLNTTLSRACHLLTFRERLALLAELALLSLPPFLPAQTA
CRLLGLSPPFLPIPRGSDAVAEVLHFFSQRHPSLAPLEKEEGLYVLSSLQ
KLDQPRFGREDRGLRGRAVVLAVVGASLLPYLQAHWGEVVDRRQLMSRRG
GGGGGRGRGGGRGGGGWAWSCVGMAVLVIVGFMLCQAIIFLSAPPHKTFG
VVRRDNAGIAL*

mRNA from alignment at scaffold_29:208337..211204-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8920 ID=mRNA_8920|Name=jgi.p|Nanoce1779_2|604503|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp|location=Sequence derived from alignment at scaffold_29:208337..211204- (Nannochloropsis oceanica)
ACAGGCTGCACCTTCGGGTTCACGTACAGGGCATAGCGGTGTCGCCGCGT
GACGCGCTGGGCGGCTCAATTGCTGGGCATTGATCGACTTTGCGTCTCTG
CCCTGCCACCACCTGCCCCCCCCAGCCAATTCAGCCAATTTGCCCCCGCC
TATCTCCTTCCTACTACTACTGTACCAGCCACACCACTAGCCCTCCAGCG
ATGGTGTCCTCTACGCCTATGTCTCCATCACCTCCTCTCTCACCTCCTCC
ACCTCCTTCGTCGTCTCTTCCCCGTCCCGGTAACACCATGCGCTCTTTAG
AAATGAATTATGAGCAGCACGACGAGGAGTCTGCTACTTGTACGTTGCTG
CGCAAACGAGACGGGAGCGCAGGTCCTCCGGTGCCTCTACTTTCCTCTCC
AAGCACCATCCATGCCATGGCTGGTCATGCTGCTTCTGTCGGCATGCTCG
GGAGCAGCAGCAATGTCCCCGCCCCGACGACAAGCAGCAGCACCACCACC
ACCGCCTCTAGCACTATGATCAATTCTGGCATGGTCTTTATTTCTGGTCA
TAACGCCGACTTTTTCCTCCTGGGTACTCAGGGGATTGGTGGCTCGTATG
CCAACGCCCGAATCTCCCTTGCATTGCGAGAGAAACGACCCGATATTTTG
ATCGTCCAGCTGTGCTCGACCCGGCTCCGTTTACTCCTCGACCCGGACGC
TTCCATCTGGTCCTACCTTGTCGATATCCATGCAGCCACGAGCAGCAGCA
GCAGCAGTAGTGGTAGTGGTAGCTTTGACCCTTACCATCCTTTCACAGGC
GTCGCGCCATTACTCAATTTTTCCCGATTTGCTTCCTTAGTGATCGCACG
AGTTGTCTGGAAGGCTCTTGCCCTCCTGGTAGGGGAACGGAGGACCATCG
CTCAGGAATACATCCACAGCATCCGCCTCGCTGCTGCCCCTCCTTCCCCT
GCGGATCACACGCGTGTCGTTTTGGGTGGTCGGGATTTAAACACAACCCT
CTCCCGAGCTTGTCACCTCTTGACGTTCCGCGAACGTCTCGCCCTTCTGG
CAGAGCTGGCATTGCTCTCCCTCCCTCCCTTCCTCCCCGCCCAAACGGCC
TGTAGATTGCTTGGCTTATCGCCTCCTTTTTTGCCCATTCCTCGAGGTTC
TGATGCTGTGGCAGAGGTGCTTCATTTCTTCTCGCAGCGCCATCCGTCCC
TGGCACCGTTGGAGAAGGAGGAGGGACTCTATGTCCTCTCATCGCTGCAA
AAACTGGACCAGCCACGCTTTGGGAGGGAGGACCGAGGGCTGAGGGGTCG
GGCGGTAGTGCTGGCAGTGGTAGGTGCGTCATTGTTGCCTTACTTACAGG
CCCATTGGGGGGAGGTGGTGGACCGACGGCAGTTGATGTCTCGCAGGGGA
GGCGGAGGGGGAGGACGAGGACGCGGGGGAGGGAGGGGTGGGGGGGGATG
GGCATGGTCATGCGTGGGGATGGCTGTGCTAGTAATCGTTGGTTTCATGC
TCTGTCAGGCGATTATTTTCTTATCGGCGCCACCACATAAGACGTTCGGA
GTGGTTAGAAGGGACAATGCGGGGATAGCTTTATGAGGATGAAAAGGCGG
AAGATAAGGAAGAATTAGATATAGGAATGGGGAGGGGAGGGAATGAAAGA
GGGAGAGATCTCTCGAGGGCCAGAAAGTAGTGGAGGGGAGAGATGTTAAC
GGGAGGAAAGAGAAATGAGAAAAGAATTCTGTACACGAGGGGTCTTATAA
ATAGGTAAACATGAGAAAAGGAGATAATGAGGTGGAGGAAAGATGTGCAT
AATATGTTAACTTGCTAGATATAAATCCCAATAATTGTTTCACCTTAGTC
AAATCATGTGGTGACGAGCATATGAGCCACTAGAAGCCTAACCGTAATAG
CAAGAGGTTCGATTTCATCCGACCATGTACCTTTATGGCCTTGCCCTCGC
TTTCGATGTATTTTATTTCGTCATTTCCTCTCACACTCCCTGGGGGGAAA
GGCTTGGACCATGAGCCTAAGTATCCGCCCTTTCCCATGGGGCCCGCTGA
GTACAACGAAGGGTAAAGAGATGGCAGAGGAGGCAGGAGAGGGAGGGAGA
GAGAAAGACGTCGGGACGGAAGTAGGGTGCGGTAGCAGTTTTTGTTTTTA
AAAAATACGGAGACAAACACAAGATTGTTCAAAATGTAATGATAGTCGAT
AGAAACGGGGGTAGATAGGTAAAATAGTCTCAAAAGGCGGAGGGTATGGA
TGCTGGCAGGGAGAGGGATTGTAATTTGAAATACATGTAGGAAGGCCAGG
CTGGAGGACGAGAACTGGAAAGTACGCCAAACGCACATCCAAGGATCTCG
CGAAGCCAAGCTCTGCAGTCTTTCTCCTTTAGTCAAAAGGGGAATCGTTT
CTTGCTGCTTGTACTGAGTATGTACGTTGGGTGGGGGAGGTTTTCCACGA
ATAACACATGACCAAGCAATCCCTCGATTTATACTCAACCCACCCACCAT
ATCGCGCCACGAACAGGCACTACACCTCGTCATGTCCTTTATGGGGGCTC
CACCGCCGCTGCCTGGGGAGCGGCCACTCAAAAAGCAGCATGGGCAACAC
CACCGTCATCGGCATTACCACCTCAATCCCTCGGGCAGCGGCGCTGAGTC
GCACTACGGTCCATCTTCTGCTGCTGCCATTTCGTCCTCCTCATCTCTGC
ACCTCTCACAACATAAGCACAAGAAGTATTTCAAGGCCTTGCAAGGCGTG
GGAGTCCACATTCACGACGGGGAGGACGGCGCCGGCGAGGAAGGGAGGAA
GGGGGGGAAGGAGGGAGGGGAAGCTGAGGGATTGACCGTCTATGGGTTGT
CCGTTGACGTGTTGAGAG

Coding sequence (CDS) from alignment at scaffold_29:208337..211204-

>mRNA_8920 ID=mRNA_8920|Name=jgi.p|Nanoce1779_2|604503|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_29:208337..211204- (Nannochloropsis oceanica)
ATGGTGTCCTCTACGCCTATGTCTCCATCACCTCCTCTCTCACCTCCTCC
ACCTCCTTCGTCGTCTCTTCCCCGTCCCGGTAACACCATGCGCTCTTTAG
AAATGAATTATGAGCAGCACGACGAGGAGTCTGCTACTTGTACGTTGCTG
CGCAAACGAGACGGGAGCGCAGGTCCTCCGGTGCCTCTACTTTCCTCTCC
AAGCACCATCCATGCCATGGCTGGTCATGCTGCTTCTGTCGGCATGCTCG
GGAGCAGCAGCAATGTCCCCGCCCCGACGACAAGCAGCAGCACCACCACC
ACCGCCTCTAGCACTATGATCAATTCTGGCATGGTCTTTATTTCTGGTCA
TAACGCCGACTTTTTCCTCCTGGGTACTCAGGGGATTGGTGGCTCGTATG
CCAACGCCCGAATCTCCCTTGCATTGCGAGAGAAACGACCCGATATTTTG
ATCGTCCAGCTGTGCTCGACCCGGCTCCGTTTACTCCTCGACCCGGACGC
TTCCATCTGGTCCTACCTTGTCGATATCCATGCAGCCACGAGCAGCAGCA
GCAGCAGTAGTGGTAGTGGTAGCTTTGACCCTTACCATCCTTTCACAGGC
GTCGCGCCATTACTCAATTTTTCCCGATTTGCTTCCTTAGTGATCGCACG
AGTTGTCTGGAAGGCTCTTGCCCTCCTGGTAGGGGAACGGAGGACCATCG
CTCAGGAATACATCCACAGCATCCGCCTCGCTGCTGCCCCTCCTTCCCCT
GCGGATCACACGCGTGTCGTTTTGGGTGGTCGGGATTTAAACACAACCCT
CTCCCGAGCTTGTCACCTCTTGACGTTCCGCGAACGTCTCGCCCTTCTGG
CAGAGCTGGCATTGCTCTCCCTCCCTCCCTTCCTCCCCGCCCAAACGGCC
TGTAGATTGCTTGGCTTATCGCCTCCTTTTTTGCCCATTCCTCGAGGTTC
TGATGCTGTGGCAGAGGTGCTTCATTTCTTCTCGCAGCGCCATCCGTCCC
TGGCACCGTTGGAGAAGGAGGAGGGACTCTATGTCCTCTCATCGCTGCAA
AAACTGGACCAGCCACGCTTTGGGAGGGAGGACCGAGGGCTGAGGGGTCG
GGCGGTAGTGCTGGCAGTGGTAGGTGCGTCATTGTTGCCTTACTTACAGG
CCCATTGGGGGGAGGTGGTGGACCGACGGCAGTTGATGTCTCGCAGGGGA
GGCGGAGGGGGAGGACGAGGACGCGGGGGAGGGAGGGGTGGGGGGGGATG
GGCATGGTCATGCGTGGGGATGGCTGTGCTAGTAATCGTTGGTTTCATGC
TCTGTCAGGCGATTATTTTCTTATCGGCGCCACCACATAAGACGTTCGGA
GTGGTTAGAAGGGACAATGCGGGGATAGCTTTATGA

Synonyms

Publications