jgi.p|Nanoce1779_2|145441, mRNA_892 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|145441
Unique Name	mRNA_892
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1742
Alignment location	scaffold_2:674657..676398 +

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Properties


Property Name	Value
TranscriptId	145527
Track	FilteredModels2
ProteinId	145441

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:674657..676398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|145441	gene_892	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|145441	mRNA_892-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_892	CDS_892	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:674657..676398+
coding sequence from alignment at scaffold_2:674657..676398+

mRNA sequence

>mRNA_892 ID=mRNA_892|Name=jgi.p|Nanoce1779_2|145441|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp
AATAGTCTAAATGACCACGACAAGACGGCAACAAGGCGGCCACGACGCCA
GCTTTTCCTCCTCATTTTTCTCCCTCAGACACAAAGACGTCACTCGTGCA
TACGCTCCTGCCTCTTATAGCCCCACCCAAATTGTTGAGGAGTGGAAACA
TATATTTGGTCCGGGCAGCGACCTCTTTGAGCCCGGGGACCCCCGCGGCA
TTCTTGGCGGTATCACCCCGCTAGAAGTCCGAAAGCAGCTAGATTTCCAG
ACCGCAGAAATCGAAAAGCTACGGGCGGAGGTGGTCGAGATGAGGAGATG
TGTACACAAGGAGCAACAAGAGCTTAAGTCACAAGTCATTTTTTTTGCCG
CAAAGGCACGCGCGGCGGCCCGTCAGGCCAAGTCGGAAGGCACCGATTCC
TTGACGTTGCAAAAGAAGGCACATGAACGAGAATTGGCACGTTTGCGCGA
AGCCCACGAATACGAAATTACAGCTTGGAGGGATAGGGTAGAAGCGCTTG
AGCGAGAGCAGCAGCAACAGCAACCCTCATTCCCGATTCCACCCCCGTCC
TCTTCTGGTCGACCGCAGTCCTCTTCGGCGCGACTCCAATCAACCTCCTC
CTTCTCGCCCTCGAGACGTCCCTTTGGTTCCACCCAAATTCCGGCTACAT
CCATCTGCGAAAAAGAAGGGCAACAGACATGTAGGAGTGCCTATAAAGCT
GTGGGCCGGCGGGAGGACAAGGAGGAAGAGGAGGAAGCCCCGCGTGCCCT
CCCTCTCCCGATTCGATTCCCTAATTTTCCCGTGCAGTCTACAGAGGAGC
AAGCTTTGCTGGAAAAGAGACTGGCGGACTTCGAGGAGCTATATGAAGTC
ACGCGCCTGGCCATGCAGGCAACTGCAATGACCACTTCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATTACCACCACCACCACCAGCAGCAGTAGCAGCGG
CAGCGGTAAGCGTCGGAGGGAGGAAGGGGAGAGAAGGGAAAGAGGGATCA
GCGGAGAGCCAAAATAAAATAGACTTTACGTTAGGGAGCGTGGACGTATA
TCCTGGTCAGACGGCTCCGAGGACGGATGGCATAGGAGAGGGGAAGGTGG
GAGGAGGAAGTGGAGGTGGAGGAAGAGGCAGAGGCAGAATTCCGCCTATT
CTGCCGCGGGCGACGACCCACCAAAGGAAAAAAAAAACGATGACGGCTCA
ACAAGGGAGGAGGAGCGCGACGTCGACCACCAAAAGCAACACCTTCGGTG
ATCGAGCTTTTACGCGCTTAGATCCTACGCAGTACCCCACGTCCGGGGTA
AGCAATCCGCCTATGCTTCCTCCTACACGAGAACCCAATGATGGTGCTGG
TGTGCAGGAGCCGCGGGACATTCGGGGCATATTTAAACCGTTGATGACAG
CAGAGCAGAAGGAGAGAGATAAGAGAGAGGAGGAGGAAGAGGAGGAGGAT
GAGAGCGAGGAGGAAGAGGTGGGGGATGTGGAAGGGGAGGAAAGTGTCAA
CGAAGAGAAAGGGAGCCTAGAAGAGATGGAAAGCAGCGAAGGAGAGGAAG
AAGAAAGTGGCGACTCCGAGCGTGGGGATTATGACTGTGATCATGATGAT
GATGAGGAGGAGGAGGAGTATGAGAGTGAGAATGAGACCGAGAGCGAGGA
GGAAGATTGGCTGGAGAACGAGTAAGAAGAGTCTTCTTAATAGAGAAGGC
ATGTTCAAGAAGAAAAAACCCAAATGTACGTTTGTTTACCAG

protein sequence of jgi.p|Nanoce1779_2|145441

>mRNA_892-protein ID=mRNA_892-protein|Name=jgi.p|Nanoce1779_2|145441|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MTTTRRQQGGHDASFSSSFFSLRHKDVTRAYAPASYSPTQIVEEWKHIFG
PGSDLFEPGDPRGILGGITPLEVRKQLDFQTAEIEKLRAEVVEMRRCVHK
EQQELKSQVIFFAAKARAAARQAKSEGTDSLTLQKKAHERELARLREAHE
YEITAWRDRVEALEREQQQQQPSFPIPPPSSSGRPQSSSARLQSTSSFSP
SRRPFGSTQIPATSICEKEGQQTCRSAYKAVGRREDKEEEEEAPRALPLP
IRFPNFPVQSTEEQALLEKRLADFEELYEVTRLAMQATAMTTSAAAAAAA
AALPPPPPAAVAAAAVSVGGRKGREGKEGSAESQNKIDFTLGSVDVYPGQ
TAPRTDGIGEGKVGGGSGGGGRGRGRIPPILPRATTHQRKKKTMTAQQGR
RSATSTTKSNTFGDRAFTRLDPTQYPTSGVSNPPMLPPTREPNDGAGVQE
PRDIRGIFKPLMTAEQKERDKREEEEEEEDESEEEEVGDVEGEESVNEEK
GSLEEMESSEGEEEESGDSERGDYDCDHDDDEEEEEYESENETESEEEDW
LENE*

mRNA from alignment at scaffold_2:674657..676398+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_892 ID=mRNA_892|Name=jgi.p|Nanoce1779_2|145441|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp|location=Sequence derived from alignment at scaffold_2:674657..676398+ (Nannochloropsis oceanica)
AATAGTCTAAATGACCACGACAAGACGGCAACAAGGCGGCCACGACGCCA
GCTTTTCCTCCTCATTTTTCTCCCTCAGACACAAAGACGTCACTCGTGCA
TACGCTCCTGCCTCTTATAGCCCCACCCAAATTGTTGAGGAGTGGAAACA
TATATTTGGTCCGGGCAGCGACCTCTTTGAGCCCGGGGACCCCCGCGGCA
TTCTTGGCGGTATCACCCCGCTAGAAGTCCGAAAGCAGCTAGATTTCCAG
ACCGCAGAAATCGAAAAGCTACGGGCGGAGGTGGTCGAGATGAGGAGATG
TGTACACAAGGAGCAACAAGAGCTTAAGTCACAAGTCATTTTTTTTGCCG
CAAAGGCACGCGCGGCGGCCCGTCAGGCCAAGTCGGAAGGCACCGATTCC
TTGACGTTGCAAAAGAAGGCACATGAACGAGAATTGGCACGTTTGCGCGA
AGCCCACGAATACGAAATTACAGCTTGGAGGGATAGGGTAGAAGCGCTTG
AGCGAGAGCAGCAGCAACAGCAACCCTCATTCCCGATTCCACCCCCGTCC
TCTTCTGGTCGACCGCAGTCCTCTTCGGCGCGACTCCAATCAACCTCCTC
CTTCTCGCCCTCGAGACGTCCCTTTGGTTCCACCCAAATTCCGGCTACAT
CCATCTGCGAAAAAGAAGGGCAACAGACATGTAGGAGTGCCTATAAAGCT
GTGGGCCGGCGGGAGGACAAGGAGGAAGAGGAGGAAGCCCCGCGTGCCCT
CCCTCTCCCGATTCGATTCCCTAATTTTCCCGTGCAGTCTACAGAGGAGC
AAGCTTTGCTGGAAAAGAGACTGGCGGACTTCGAGGAGCTATATGAAGTC
ACGCGCCTGGCCATGCAGGCAACTGCAATGACCACTTCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATTACCACCACCACCACCAGCAGCAGTAGCAGCGG
CAGCGGTAAGCGTCGGAGGGAGGAAGGGGAGAGAAGGGAAAGAGGGATCA
GCGGAGAGCCAAAATAAAATAGACTTTACGTTAGGGAGCGTGGACGTATA
TCCTGGTCAGACGGCTCCGAGGACGGATGGCATAGGAGAGGGGAAGGTGG
GAGGAGGAAGTGGAGGTGGAGGAAGAGGCAGAGGCAGAATTCCGCCTATT
CTGCCGCGGGCGACGACCCACCAAAGGAAAAAAAAAACGATGACGGCTCA
ACAAGGGAGGAGGAGCGCGACGTCGACCACCAAAAGCAACACCTTCGGTG
ATCGAGCTTTTACGCGCTTAGATCCTACGCAGTACCCCACGTCCGGGGTA
AGCAATCCGCCTATGCTTCCTCCTACACGAGAACCCAATGATGGTGCTGG
TGTGCAGGAGCCGCGGGACATTCGGGGCATATTTAAACCGTTGATGACAG
CAGAGCAGAAGGAGAGAGATAAGAGAGAGGAGGAGGAAGAGGAGGAGGAT
GAGAGCGAGGAGGAAGAGGTGGGGGATGTGGAAGGGGAGGAAAGTGTCAA
CGAAGAGAAAGGGAGCCTAGAAGAGATGGAAAGCAGCGAAGGAGAGGAAG
AAGAAAGTGGCGACTCCGAGCGTGGGGATTATGACTGTGATCATGATGAT
GATGAGGAGGAGGAGGAGTATGAGAGTGAGAATGAGACCGAGAGCGAGGA
GGAAGATTGGCTGGAGAACGAGTAAGAAGAGTCTTCTTAATAGAGAAGGC
ATGTTCAAGAAGAAAAAACCCAAATGTACGTTTGTTTACCAG

Coding sequence (CDS) from alignment at scaffold_2:674657..676398+

>mRNA_892 ID=mRNA_892|Name=jgi.p|Nanoce1779_2|145441|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_2:674657..676398+ (Nannochloropsis oceanica)
ATGACCACGACAAGACGGCAACAAGGCGGCCACGACGCCAGCTTTTCCTC
CTCATTTTTCTCCCTCAGACACAAAGACGTCACTCGTGCATACGCTCCTG
CCTCTTATAGCCCCACCCAAATTGTTGAGGAGTGGAAACATATATTTGGT
CCGGGCAGCGACCTCTTTGAGCCCGGGGACCCCCGCGGCATTCTTGGCGG
TATCACCCCGCTAGAAGTCCGAAAGCAGCTAGATTTCCAGACCGCAGAAA
TCGAAAAGCTACGGGCGGAGGTGGTCGAGATGAGGAGATGTGTACACAAG
GAGCAACAAGAGCTTAAGTCACAAGTCATTTTTTTTGCCGCAAAGGCACG
CGCGGCGGCCCGTCAGGCCAAGTCGGAAGGCACCGATTCCTTGACGTTGC
AAAAGAAGGCACATGAACGAGAATTGGCACGTTTGCGCGAAGCCCACGAA
TACGAAATTACAGCTTGGAGGGATAGGGTAGAAGCGCTTGAGCGAGAGCA
GCAGCAACAGCAACCCTCATTCCCGATTCCACCCCCGTCCTCTTCTGGTC
GACCGCAGTCCTCTTCGGCGCGACTCCAATCAACCTCCTCCTTCTCGCCC
TCGAGACGTCCCTTTGGTTCCACCCAAATTCCGGCTACATCCATCTGCGA
AAAAGAAGGGCAACAGACATGTAGGAGTGCCTATAAAGCTGTGGGCCGGC
GGGAGGACAAGGAGGAAGAGGAGGAAGCCCCGCGTGCCCTCCCTCTCCCG
ATTCGATTCCCTAATTTTCCCGTGCAGTCTACAGAGGAGCAAGCTTTGCT
GGAAAAGAGACTGGCGGACTTCGAGGAGCTATATGAAGTCACGCGCCTGG
CCATGCAGGCAACTGCAATGACCACTTCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATTACCACCACCACCACCAGCAGCAGTAGCAGCGGCAGCGGTAAG
CGTCGGAGGGAGGAAGGGGAGAGAAGGGAAAGAGGGATCAGCGGAGAGCC
AAAATAAAATAGACTTTACGTTAGGGAGCGTGGACGTATATCCTGGTCAG
ACGGCTCCGAGGACGGATGGCATAGGAGAGGGGAAGGTGGGAGGAGGAAG
TGGAGGTGGAGGAAGAGGCAGAGGCAGAATTCCGCCTATTCTGCCGCGGG
CGACGACCCACCAAAGGAAAAAAAAAACGATGACGGCTCAACAAGGGAGG
AGGAGCGCGACGTCGACCACCAAAAGCAACACCTTCGGTGATCGAGCTTT
TACGCGCTTAGATCCTACGCAGTACCCCACGTCCGGGGTAAGCAATCCGC
CTATGCTTCCTCCTACACGAGAACCCAATGATGGTGCTGGTGTGCAGGAG
CCGCGGGACATTCGGGGCATATTTAAACCGTTGATGACAGCAGAGCAGAA
GGAGAGAGATAAGAGAGAGGAGGAGGAAGAGGAGGAGGATGAGAGCGAGG
AGGAAGAGGTGGGGGATGTGGAAGGGGAGGAAAGTGTCAACGAAGAGAAA
GGGAGCCTAGAAGAGATGGAAAGCAGCGAAGGAGAGGAAGAAGAAAGTGG
CGACTCCGAGCGTGGGGATTATGACTGTGATCATGATGATGATGAGGAGG
AGGAGGAGTATGAGAGTGAGAATGAGACCGAGAGCGAGGAGGAAGATTGG
CTGGAGAACGAGTAA

Synonyms

Publications