jgi.p|Nanoce1779_2|225297, mRNA_8917 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|225297
Unique Name	mRNA_8917
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2060
Alignment location	scaffold_29:199219..201278 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	225383
Track	FilteredModels2
ProteinId	225297

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:199219..201278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|225297	gene_8917	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|225297	mRNA_8917-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8917	CDS_8917	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:199219..201278+
coding sequence from alignment at scaffold_29:199219..201278+

mRNA sequence

>mRNA_8917 ID=mRNA_8917|Name=jgi.p|Nanoce1779_2|225297|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp
CCTCCCCTCCCCTGCCTCTCTCCTCTTTCCACAGGCAATCCTGCTACATC
CTCCACCACACCGTCCCTTCACAATGGCCTGCATCAAAGCTAGTAGTATA
TGCAGCCGGACCAACAGCAACAGTAACCCCGTTAGGAATAGCAGCAGCAA
TACCACTCGCAGTAGCAGCGGCAGCAGCAGCAGGACCCTAGCTCTGGAAC
ACGCTTTCCATGCCGGGCTCCCTGCCCTCCCCGACGGATATCGCCATACA
TCGCTTGGGACTTGCAAGATTTGTAAGGGCGAGTTCGACCGATACATGGC
AAACATGCACTACAAGTTGGAAAAATTACGCCCAACCCGGTTCGTTGTAG
AGACACTCCGCCCCTTCGTGTTTGAGCCCTGCAGAGACGACGCCTTCCTT
ATACAACTGCTCGAAAAGGTTTACAAGCGACAAAAACTAAGCACATACGA
GAGGGCCCACCTTCATCTGGCCAGGTGGCGGCTCCAGGTACTCAAATTTC
AGGAGACGGCGGCATGGACAAAGCCCGACGAGCCTCCTCCTCCTCCTCCC
CTTTTCGGGTGTCAGTGCATCGTGGAAGTGTATGCTCCGGAGCATCGTTC
AAAGTCTTCTTCCTCAAGGCGACAGAAACAAGGAGAAGCAAAAGTCGCAC
CATCAGCAGCAGGAAAGGGACAAGGCGGCACCGAGCATCGTCGGCGCTCC
TCTTCCGTCTGTGGCAGCGACGCAATGCACAGACCGGACACCGTCTCTCT
GCCTTCTCTTCCTTCCTCCTCATCCAATACCTCCTCCACCACTGTCTCAC
CCGTGTACCCATATCGGCTCGAGAAGATCACTAGAATGGGTGATGATTAC
AAATTAAATTATCAAGATGGGACTTACACCTTCTTCACCTCTGCCTCTTC
CTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAATCAGCGGG
ATCGACATCGATTCTCGCGTAGCTGCAGCGGACGCCCTCCCTTTCCCGAC
CATACACTGATGGTGGAGGACAAAGATGAAGAAGGAACGTCAGCCTCCTC
CACCCTCACGACCTCCTCCACCTCCGACCAGCACCGGCGTCGGTCGTCCT
CAATGTACAGAGGAAAATTACCGTACAGCAGCAGCAGCAGCAACCCAAGC
CTACCGGACTCAGCCCTCATCACGGGAAGATCCTCCTTCTCGTCCTTTCC
CGCGTCTTTTCCCCCTTCCAAGCACATCGTCCATTTCGAGGAGCCCCAGC
ACCGACATCTTGCTTCTTCCATGTACAAGGAGGAACTGCCTGAGAGGCAC
ACATACAGCAGCAGCAGCAACAGCAGCAAACATAGTAGCCATGTACGTCA
CCCTGGCCCCCCCCTTCCTGACATTGATATCATTATGGGGAAGAAAGAGA
AGGAGAAGCATGCGCAGCAGCAGCAGCAGCAGCAGCAGAAACAGCAGCAG
CAGCAGAAACAGCAGCAGCAGCAGGAGGAGCACAAGCTTTCTCTATCCGT
AACGCGGAGGGAATCACCTAATGGTGCCGGCCTGCTTTCAGGACAAGGGA
ATGGAATGCAAGGAGAGGAGAACCCGTCCTCCCTCCTCCTCCCGCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CACCTCGGCATTCGGCTATTTCTTCTCTGGCAAAAGCATAGTCCTCTCCC
GCGCTTTCCTTAACCCCACCGCAGCAACAATAGCTACGGTAATAGCTGCA
GTCTCTGCACGTCTGCTGCTGGTCAAGGGAGCGGGGAGGGTGGCGGGTGC
AGTGGGAAGGAACCTCCTCCGTGCAGATTCCTACGTGTTTGAGGGAGGCA
ATAAAGGGGAGATTCAGGAGGAGGAAGGGATGGAGGCAGCGATGGAAGAA
GGTAGGCAGGGATGGAAGGAGGAGGGGCAGAAGCTGGTGCGTCGTCAATG
GAGGTGGAGGAAAGTGCTTGTGCGCGGGTGTTTTTATGTGTACTTGGGCT
GGACGATGCGACGGGCATGGGGGAGATAGATATAAAGGGTGAAGGAGGAA
AAACAGGAGA

protein sequence of jgi.p|Nanoce1779_2|225297

>mRNA_8917-protein ID=mRNA_8917-protein|Name=jgi.p|Nanoce1779_2|225297|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MACIKASSICSRTNSNSNPVRNSSSNTTRSSSGSSSRTLALEHAFHAGLP
ALPDGYRHTSLGTCKICKGEFDRYMANMHYKLEKLRPTRFVVETLRPFVF
EPCRDDAFLIQLLEKVYKRQKLSTYERAHLHLARWRLQVLKFQETAAWTK
PDEPPPPPPLFGCQCIVEVYAPEHRSKSSSSRRQKQGEAKVAPSAAGKGQ
GGTEHRRRSSSVCGSDAMHRPDTVSLPSLPSSSSNTSSTTVSPVYPYRLE
KITRMGDDYKLNYQDGTYTFFTSASSSSSSSSSSSSSSSNQRDRHRFSRS
CSGRPPFPDHTLMVEDKDEEGTSASSTLTTSSTSDQHRRRSSSMYRGKLP
YSSSSSNPSLPDSALITGRSSFSSFPASFPPSKHIVHFEEPQHRHLASSM
YKEELPERHTYSSSSNSSKHSSHVRHPGPPLPDIDIIMGKKEKEKHAQQQ
QQQQQKQQQQQKQQQQQEEHKLSLSVTRRESPNGAGLLSGQGNGMQGEEN
PSSLLLPPSSSSSSSSSSSSSSSSSSTSAFGYFFSGKSIVLSRAFLNPTA
ATIATVIAAVSARLLLVKGAGRVAGAVGRNLLRADSYVFEGGNKGEIQEE
EGMEAAMEEGRQGWKEEGQKLVRRQWRWRKVLVRGCFYVYLGWTMRRAWG
R*

mRNA from alignment at scaffold_29:199219..201278+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8917 ID=mRNA_8917|Name=jgi.p|Nanoce1779_2|225297|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp|location=Sequence derived from alignment at scaffold_29:199219..201278+ (Nannochloropsis oceanica)
CCTCCCCTCCCCTGCCTCTCTCCTCTTTCCACAGGCAATCCTGCTACATC
CTCCACCACACCGTCCCTTCACAATGGCCTGCATCAAAGCTAGTAGTATA
TGCAGCCGGACCAACAGCAACAGTAACCCCGTTAGGAATAGCAGCAGCAA
TACCACTCGCAGTAGCAGCGGCAGCAGCAGCAGGACCCTAGCTCTGGAAC
ACGCTTTCCATGCCGGGCTCCCTGCCCTCCCCGACGGATATCGCCATACA
TCGCTTGGGACTTGCAAGATTTGTAAGGGCGAGTTCGACCGATACATGGC
AAACATGCACTACAAGTTGGAAAAATTACGCCCAACCCGGTTCGTTGTAG
AGACACTCCGCCCCTTCGTGTTTGAGCCCTGCAGAGACGACGCCTTCCTT
ATACAACTGCTCGAAAAGGTTTACAAGCGACAAAAACTAAGCACATACGA
GAGGGCCCACCTTCATCTGGCCAGGTGGCGGCTCCAGGTACTCAAATTTC
AGGAGACGGCGGCATGGACAAAGCCCGACGAGCCTCCTCCTCCTCCTCCC
CTTTTCGGGTGTCAGTGCATCGTGGAAGTGTATGCTCCGGAGCATCGTTC
AAAGTCTTCTTCCTCAAGGCGACAGAAACAAGGAGAAGCAAAAGTCGCAC
CATCAGCAGCAGGAAAGGGACAAGGCGGCACCGAGCATCGTCGGCGCTCC
TCTTCCGTCTGTGGCAGCGACGCAATGCACAGACCGGACACCGTCTCTCT
GCCTTCTCTTCCTTCCTCCTCATCCAATACCTCCTCCACCACTGTCTCAC
CCGTGTACCCATATCGGCTCGAGAAGATCACTAGAATGGGTGATGATTAC
AAATTAAATTATCAAGATGGGACTTACACCTTCTTCACCTCTGCCTCTTC
CTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAATCAGCGGG
ATCGACATCGATTCTCGCGTAGCTGCAGCGGACGCCCTCCCTTTCCCGAC
CATACACTGATGGTGGAGGACAAAGATGAAGAAGGAACGTCAGCCTCCTC
CACCCTCACGACCTCCTCCACCTCCGACCAGCACCGGCGTCGGTCGTCCT
CAATGTACAGAGGAAAATTACCGTACAGCAGCAGCAGCAGCAACCCAAGC
CTACCGGACTCAGCCCTCATCACGGGAAGATCCTCCTTCTCGTCCTTTCC
CGCGTCTTTTCCCCCTTCCAAGCACATCGTCCATTTCGAGGAGCCCCAGC
ACCGACATCTTGCTTCTTCCATGTACAAGGAGGAACTGCCTGAGAGGCAC
ACATACAGCAGCAGCAGCAACAGCAGCAAACATAGTAGCCATGTACGTCA
CCCTGGCCCCCCCCTTCCTGACATTGATATCATTATGGGGAAGAAAGAGA
AGGAGAAGCATGCGCAGCAGCAGCAGCAGCAGCAGCAGAAACAGCAGCAG
CAGCAGAAACAGCAGCAGCAGCAGGAGGAGCACAAGCTTTCTCTATCCGT
AACGCGGAGGGAATCACCTAATGGTGCCGGCCTGCTTTCAGGACAAGGGA
ATGGAATGCAAGGAGAGGAGAACCCGTCCTCCCTCCTCCTCCCGCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CACCTCGGCATTCGGCTATTTCTTCTCTGGCAAAAGCATAGTCCTCTCCC
GCGCTTTCCTTAACCCCACCGCAGCAACAATAGCTACGGTAATAGCTGCA
GTCTCTGCACGTCTGCTGCTGGTCAAGGGAGCGGGGAGGGTGGCGGGTGC
AGTGGGAAGGAACCTCCTCCGTGCAGATTCCTACGTGTTTGAGGGAGGCA
ATAAAGGGGAGATTCAGGAGGAGGAAGGGATGGAGGCAGCGATGGAAGAA
GGTAGGCAGGGATGGAAGGAGGAGGGGCAGAAGCTGGTGCGTCGTCAATG
GAGGTGGAGGAAAGTGCTTGTGCGCGGGTGTTTTTATGTGTACTTGGGCT
GGACGATGCGACGGGCATGGGGGAGATAGATATAAAGGGTGAAGGAGGAA
AAACAGGAGA

Coding sequence (CDS) from alignment at scaffold_29:199219..201278+

>mRNA_8917 ID=mRNA_8917|Name=jgi.p|Nanoce1779_2|225297|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_29:199219..201278+ (Nannochloropsis oceanica)
ATGGCCTGCATCAAAGCTAGTAGTATATGCAGCCGGACCAACAGCAACAG
TAACCCCGTTAGGAATAGCAGCAGCAATACCACTCGCAGTAGCAGCGGCA
GCAGCAGCAGGACCCTAGCTCTGGAACACGCTTTCCATGCCGGGCTCCCT
GCCCTCCCCGACGGATATCGCCATACATCGCTTGGGACTTGCAAGATTTG
TAAGGGCGAGTTCGACCGATACATGGCAAACATGCACTACAAGTTGGAAA
AATTACGCCCAACCCGGTTCGTTGTAGAGACACTCCGCCCCTTCGTGTTT
GAGCCCTGCAGAGACGACGCCTTCCTTATACAACTGCTCGAAAAGGTTTA
CAAGCGACAAAAACTAAGCACATACGAGAGGGCCCACCTTCATCTGGCCA
GGTGGCGGCTCCAGGTACTCAAATTTCAGGAGACGGCGGCATGGACAAAG
CCCGACGAGCCTCCTCCTCCTCCTCCCCTTTTCGGGTGTCAGTGCATCGT
GGAAGTGTATGCTCCGGAGCATCGTTCAAAGTCTTCTTCCTCAAGGCGAC
AGAAACAAGGAGAAGCAAAAGTCGCACCATCAGCAGCAGGAAAGGGACAA
GGCGGCACCGAGCATCGTCGGCGCTCCTCTTCCGTCTGTGGCAGCGACGC
AATGCACAGACCGGACACCGTCTCTCTGCCTTCTCTTCCTTCCTCCTCAT
CCAATACCTCCTCCACCACTGTCTCACCCGTGTACCCATATCGGCTCGAG
AAGATCACTAGAATGGGTGATGATTACAAATTAAATTATCAAGATGGGAC
TTACACCTTCTTCACCTCTGCCTCTTCCTCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCAATCAGCGGGATCGACATCGATTCTCGCGTAGC
TGCAGCGGACGCCCTCCCTTTCCCGACCATACACTGATGGTGGAGGACAA
AGATGAAGAAGGAACGTCAGCCTCCTCCACCCTCACGACCTCCTCCACCT
CCGACCAGCACCGGCGTCGGTCGTCCTCAATGTACAGAGGAAAATTACCG
TACAGCAGCAGCAGCAGCAACCCAAGCCTACCGGACTCAGCCCTCATCAC
GGGAAGATCCTCCTTCTCGTCCTTTCCCGCGTCTTTTCCCCCTTCCAAGC
ACATCGTCCATTTCGAGGAGCCCCAGCACCGACATCTTGCTTCTTCCATG
TACAAGGAGGAACTGCCTGAGAGGCACACATACAGCAGCAGCAGCAACAG
CAGCAAACATAGTAGCCATGTACGTCACCCTGGCCCCCCCCTTCCTGACA
TTGATATCATTATGGGGAAGAAAGAGAAGGAGAAGCATGCGCAGCAGCAG
CAGCAGCAGCAGCAGAAACAGCAGCAGCAGCAGAAACAGCAGCAGCAGCA
GGAGGAGCACAAGCTTTCTCTATCCGTAACGCGGAGGGAATCACCTAATG
GTGCCGGCCTGCTTTCAGGACAAGGGAATGGAATGCAAGGAGAGGAGAAC
CCGTCCTCCCTCCTCCTCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCGGCATTCGGCTATTTCT
TCTCTGGCAAAAGCATAGTCCTCTCCCGCGCTTTCCTTAACCCCACCGCA
GCAACAATAGCTACGGTAATAGCTGCAGTCTCTGCACGTCTGCTGCTGGT
CAAGGGAGCGGGGAGGGTGGCGGGTGCAGTGGGAAGGAACCTCCTCCGTG
CAGATTCCTACGTGTTTGAGGGAGGCAATAAAGGGGAGATTCAGGAGGAG
GAAGGGATGGAGGCAGCGATGGAAGAAGGTAGGCAGGGATGGAAGGAGGA
GGGGCAGAAGCTGGTGCGTCGTCAATGGAGGTGGAGGAAAGTGCTTGTGC
GCGGGTGTTTTTATGTGTACTTGGGCTGGACGATGCGACGGGCATGGGGG
AGATAG

Synonyms

Publications