jgi.p|Nanoce1779_2|642197, mRNA_8916 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642197
Unique NamemRNA_8916
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length966
Alignment locationscaffold_29:195212..196177 +

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Properties
Property NameValue
TranscriptId642283
TrackFilteredModels2
ProteinId642197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:195212..196177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642197gene_8916Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642197mRNA_8916-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8916CDS_8916Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8916 ID=mRNA_8916|Name=jgi.p|Nanoce1779_2|642197|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGGGACATGACAGGAAAGATGCGACAGAGGAAGAAGTGAGAGGAGAGAG
ACAGGAAGAGGGGATTGCGGTCTTCCAGAGCTTGGGCGAGGGGCTTATGG
AGTGGATGGAAGGGGAGGGAGGCGTGAAGGTTGTCCCATGGGAAGGTATG
TGTGGAGATGAAATTATGGGGGAGGGGGATAAAGCAATCAAGCCCGTGGC
CGAGGCCGTGCAGCAAGCGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGAGGTGCAAGAG
GAGGGGAATGGGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGA
GGAAGAAGAAGAAGAAGAAGAAGAACAGTCGGTGGTGGTAGAGGTGATTG
GAGTGGAAGAGGAAGAGGTCGTGCATCAGAGAGCGGAAGTAATGGAAAAG
AAGGTGAAGACAAAAACCTTTTGCGGCTGCATCGAGGGTGTGGGTAGGCT
TGTAGTGGGGATAGGAAGCATTGCGAGGGAAACGCTTGTCCGCGTCTTGT
ACGGAGCGTACGAGGCCGTTGTGAATGGCGTGTGGGGTGGGTTTAAGATG
GCCTCAGGCTCATGTGTGAGCCTGAAGAAAGGACTGGTGGCGGCAGGGGC
GCGTCTCTTTGGACGGAAGAAGAAGCAGAAGCTGAAGGTGGTGGTGAGAA
TAGAGTATCCGGAAGTGATCGTCGAGGAGGAGTGGGTCGACGACAACGAG
GCAGAAGAGGAGATGGAAAGAGAGAGGGAGTACATGAGGAGGACTTGTGC
TCAATGGGGCTGTCCCTTTTTGGATTTGGGGTATGAGCTAGGATGTCCAG
ACCTGGCATACAGGTTATACATAATGTATGATAGGCTCTTGAGGAGGGGA
GAGCGCCTGGTTAAGAAGTGGGAGCATATGTCTCGGGCTTACAAAGTTCA
ATGTGCAGCCAAATAG
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protein sequence of jgi.p|Nanoce1779_2|642197

>mRNA_8916-protein ID=mRNA_8916-protein|Name=jgi.p|Nanoce1779_2|642197|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MGHDRKDATEEEVRGERQEEGIAVFQSLGEGLMEWMEGEGGVKVVPWEGM
CGDEIMGEGDKAIKPVAEAVQQAKEEEEEEEEEEEEEEEEEEEEEVEVQE
EGNGEKEEEEEKEEEEEEEEEEEEEQSVVVEVIGVEEEEVVHQRAEVMEK
KVKTKTFCGCIEGVGRLVVGIGSIARETLVRVLYGAYEAVVNGVWGGFKM
ASGSCVSLKKGLVAAGARLFGRKKKQKLKVVVRIEYPEVIVEEEWVDDNE
AEEEMEREREYMRRTCAQWGCPFLDLGYELGCPDLAYRLYIMYDRLLRRG
ERLVKKWEHMSRAYKVQCAAK*
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mRNA from alignment at scaffold_29:195212..196177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8916 ID=mRNA_8916|Name=jgi.p|Nanoce1779_2|642197|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at scaffold_29:195212..196177+ (Nannochloropsis oceanica)
ATGGGACATGACAGGAAAGATGCGACAGAGGAAGAAGTGAGAGGAGAGAG
ACAGGAAGAGGGGATTGCGGTCTTCCAGAGCTTGGGCGAGGGGCTTATGG
AGTGGATGGAAGGGGAGGGAGGCGTGAAGGTTGTCCCATGGGAAGGTATG
TGTGGAGATGAAATTATGGGGGAGGGGGATAAAGCAATCAAGCCCGTGGC
CGAGGCCGTGCAGCAAGCGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGAGGTGCAAGAG
GAGGGGAATGGGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGA
GGAAGAAGAAGAAGAAGAAGAAGAACAGTCGGTGGTGGTAGAGGTGATTG
GAGTGGAAGAGGAAGAGGTCGTGCATCAGAGAGCGGAAGTAATGGAAAAG
AAGGTGAAGACAAAAACCTTTTGCGGCTGCATCGAGGGTGTGGGTAGGCT
TGTAGTGGGGATAGGAAGCATTGCGAGGGAAACGCTTGTCCGCGTCTTGT
ACGGAGCGTACGAGGCCGTTGTGAATGGCGTGTGGGGTGGGTTTAAGATG
GCCTCAGGCTCATGTGTGAGCCTGAAGAAAGGACTGGTGGCGGCAGGGGC
GCGTCTCTTTGGACGGAAGAAGAAGCAGAAGCTGAAGGTGGTGGTGAGAA
TAGAGTATCCGGAAGTGATCGTCGAGGAGGAGTGGGTCGACGACAACGAG
GCAGAAGAGGAGATGGAAAGAGAGAGGGAGTACATGAGGAGGACTTGTGC
TCAATGGGGCTGTCCCTTTTTGGATTTGGGGTATGAGCTAGGATGTCCAG
ACCTGGCATACAGGTTATACATAATGTATGATAGGCTCTTGAGGAGGGGA
GAGCGCCTGGTTAAGAAGTGGGAGCATATGTCTCGGGCTTACAAAGTTCA
ATGTGCAGCCAAATAG
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Coding sequence (CDS) from alignment at scaffold_29:195212..196177+

>mRNA_8916 ID=mRNA_8916|Name=jgi.p|Nanoce1779_2|642197|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_29:195212..196177+ (Nannochloropsis oceanica)
ATGGGACATGACAGGAAAGATGCGACAGAGGAAGAAGTGAGAGGAGAGAG
ACAGGAAGAGGGGATTGCGGTCTTCCAGAGCTTGGGCGAGGGGCTTATGG
AGTGGATGGAAGGGGAGGGAGGCGTGAAGGTTGTCCCATGGGAAGGTATG
TGTGGAGATGAAATTATGGGGGAGGGGGATAAAGCAATCAAGCCCGTGGC
CGAGGCCGTGCAGCAAGCGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGAGGTGCAAGAG
GAGGGGAATGGGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGA
GGAAGAAGAAGAAGAAGAAGAAGAACAGTCGGTGGTGGTAGAGGTGATTG
GAGTGGAAGAGGAAGAGGTCGTGCATCAGAGAGCGGAAGTAATGGAAAAG
AAGGTGAAGACAAAAACCTTTTGCGGCTGCATCGAGGGTGTGGGTAGGCT
TGTAGTGGGGATAGGAAGCATTGCGAGGGAAACGCTTGTCCGCGTCTTGT
ACGGAGCGTACGAGGCCGTTGTGAATGGCGTGTGGGGTGGGTTTAAGATG
GCCTCAGGCTCATGTGTGAGCCTGAAGAAAGGACTGGTGGCGGCAGGGGC
GCGTCTCTTTGGACGGAAGAAGAAGCAGAAGCTGAAGGTGGTGGTGAGAA
TAGAGTATCCGGAAGTGATCGTCGAGGAGGAGTGGGTCGACGACAACGAG
GCAGAAGAGGAGATGGAAAGAGAGAGGGAGTACATGAGGAGGACTTGTGC
TCAATGGGGCTGTCCCTTTTTGGATTTGGGGTATGAGCTAGGATGTCCAG
ACCTGGCATACAGGTTATACATAATGTATGATAGGCTCTTGAGGAGGGGA
GAGCGCCTGGTTAAGAAGTGGGAGCATATGTCTCGGGCTTACAAAGTTCA
ATGTGCAGCCAAATAG
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Synonyms
Publications