jgi.p|Nanoce1779_2|657167, mRNA_8915 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|657167
Unique NamemRNA_8915
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length865
Alignment locationscaffold_29:190656..191520 +

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Properties
Property NameValue
TranscriptId657253
TrackFilteredModels2
ProteinId657167
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:190656..191520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657167gene_8915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657167mRNA_8915-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8915CDS_8915Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8915 ID=mRNA_8915|Name=jgi.p|Nanoce1779_2|657167|organism=Nannochloropsis oceanica|type=mRNA|length=865bp
CGGGAGAGGATTGAATACTCGTTCAGGGAAATAATGGATGGAGGAGTGGT
GGTGGAGGAAGAATGTGGAAGGGAGGAGTATGTGCACCTAGCCAGAAGAA
GGGAAAGCGGGACACATGAAGTGGGCTTAGAAGGCGAGGAGGAGGGGGAG
GAGGAGGAAGAGGAGTGGGAGCGGATGGAAAGCTCGTTGCCGGCGAGGTA
TTTTAATACGGAGGAAGGGAAAGGGGGAAGAGGAGAGGACGAGTGGAAGA
GGAGAAGAAGGGGAGATGAAGGAGGAGGAGGAGAAGAGCGGCCTGAGGAG
CAGCAGGAGGGCGGGAGGGAGGGAGGGGAGGAAGGCGGGTTGCGGCAAGG
AGAGAGTGTAAGACGGCCATCACCTCCACCGGGGGTAGAATCATATCGAC
CGCAGACGATAGTGACAGAAGGGGGATTCAGGATGAAATTGGTGCATAAA
CAGGGGCATCAGTGGTGGAAGACAGAACGGGAGGAGGAAGAGGGGGAGAG
AGAGGGGGAGGAAGGGGCGTCGTGTGGGGGGCAGTTGGGGAGGGAGATAA
GGAAGCAGTCGAAGGGGAAGAGTTGAGAGACATGCCGTGCGCTTACAAAG
AGAGAAAGGTATAAATAATCGAAATAAAGCAAAAAAGTGTGCGTATGGTG
CGTGTAACCCGCGCGACGGCGCCTTTTAGGACAGTGAAGCATCAGAAGAG
GGATGAGAGGAGGGACGGCGAAAGAGAAGGAACCACCAATTCAAAGCGGG
TTCGATTTATTTATATTGTCACGGGGGCGGGTAGCGAGCAAAGGCTGCGA
AGCCGACACTTACAAATGCATAAGCAAATGAAATGAAAAAAAGAATGAAA
GACGAGATGAAAAGA
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protein sequence of jgi.p|Nanoce1779_2|657167

>mRNA_8915-protein ID=mRNA_8915-protein|Name=jgi.p|Nanoce1779_2|657167|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MDGGVVVEEECGREEYVHLARRRESGTHEVGLEGEEEGEEEEEEWERMES
SLPARYFNTEEGKGGRGEDEWKRRRRGDEGGGGEERPEEQQEGGREGGEE
GGLRQGESVRRPSPPPGVESYRPQTIVTEGGFRMKLVHKQGHQWWKTERE
EEEGEREGEEGASCGGQLGREIRKQSKGKS*
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mRNA from alignment at scaffold_29:190656..191520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8915 ID=mRNA_8915|Name=jgi.p|Nanoce1779_2|657167|organism=Nannochloropsis oceanica|type=mRNA|length=865bp|location=Sequence derived from alignment at scaffold_29:190656..191520+ (Nannochloropsis oceanica)
CGGGAGAGGATTGAATACTCGTTCAGGGAAATAATGGATGGAGGAGTGGT
GGTGGAGGAAGAATGTGGAAGGGAGGAGTATGTGCACCTAGCCAGAAGAA
GGGAAAGCGGGACACATGAAGTGGGCTTAGAAGGCGAGGAGGAGGGGGAG
GAGGAGGAAGAGGAGTGGGAGCGGATGGAAAGCTCGTTGCCGGCGAGGTA
TTTTAATACGGAGGAAGGGAAAGGGGGAAGAGGAGAGGACGAGTGGAAGA
GGAGAAGAAGGGGAGATGAAGGAGGAGGAGGAGAAGAGCGGCCTGAGGAG
CAGCAGGAGGGCGGGAGGGAGGGAGGGGAGGAAGGCGGGTTGCGGCAAGG
AGAGAGTGTAAGACGGCCATCACCTCCACCGGGGGTAGAATCATATCGAC
CGCAGACGATAGTGACAGAAGGGGGATTCAGGATGAAATTGGTGCATAAA
CAGGGGCATCAGTGGTGGAAGACAGAACGGGAGGAGGAAGAGGGGGAGAG
AGAGGGGGAGGAAGGGGCGTCGTGTGGGGGGCAGTTGGGGAGGGAGATAA
GGAAGCAGTCGAAGGGGAAGAGTTGAGAGACATGCCGTGCGCTTACAAAG
AGAGAAAGGTATAAATAATCGAAATAAAGCAAAAAAGTGTGCGTATGGTG
CGTGTAACCCGCGCGACGGCGCCTTTTAGGACAGTGAAGCATCAGAAGAG
GGATGAGAGGAGGGACGGCGAAAGAGAAGGAACCACCAATTCAAAGCGGG
TTCGATTTATTTATATTGTCACGGGGGCGGGTAGCGAGCAAAGGCTGCGA
AGCCGACACTTACAAATGCATAAGCAAATGAAATGAAAAAAAGAATGAAA
GACGAGATGAAAAGA
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Coding sequence (CDS) from alignment at scaffold_29:190656..191520+

>mRNA_8915 ID=mRNA_8915|Name=jgi.p|Nanoce1779_2|657167|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_29:190656..191520+ (Nannochloropsis oceanica)
ATGGATGGAGGAGTGGTGGTGGAGGAAGAATGTGGAAGGGAGGAGTATGT
GCACCTAGCCAGAAGAAGGGAAAGCGGGACACATGAAGTGGGCTTAGAAG
GCGAGGAGGAGGGGGAGGAGGAGGAAGAGGAGTGGGAGCGGATGGAAAGC
TCGTTGCCGGCGAGGTATTTTAATACGGAGGAAGGGAAAGGGGGAAGAGG
AGAGGACGAGTGGAAGAGGAGAAGAAGGGGAGATGAAGGAGGAGGAGGAG
AAGAGCGGCCTGAGGAGCAGCAGGAGGGCGGGAGGGAGGGAGGGGAGGAA
GGCGGGTTGCGGCAAGGAGAGAGTGTAAGACGGCCATCACCTCCACCGGG
GGTAGAATCATATCGACCGCAGACGATAGTGACAGAAGGGGGATTCAGGA
TGAAATTGGTGCATAAACAGGGGCATCAGTGGTGGAAGACAGAACGGGAG
GAGGAAGAGGGGGAGAGAGAGGGGGAGGAAGGGGCGTCGTGTGGGGGGCA
GTTGGGGAGGGAGATAAGGAAGCAGTCGAAGGGGAAGAGTTGA
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Synonyms
Publications