jgi.p|Nanoce1779_2|604465, mRNA_8913 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604465
Unique NamemRNA_8913
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length849
Alignment locationscaffold_29:176356..177204 -

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Properties
Property NameValue
TranscriptId604551
TrackFilteredModels2
ProteinId604465
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:176356..177204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604465gene_8913Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604465mRNA_8913-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8913CDS_8913Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8913 ID=mRNA_8913|Name=jgi.p|Nanoce1779_2|604465|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGGTTGTGGAGGAGAAGAAGAAGAAGAAGAAAAAAAAAAAAAAAAAGAA
GGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGCGACGGTGGTAGTGGTGG
AGGAGACGAAGAAGGAGGAGGAGGAGGAGGAGAAGGCAGGGGTAGAGAAA
ACGAATAAAGGGAAGGTTGTTGTGATGATGAAAGAGGAGGAGGTGATGAT
CATGGAGGAGACGAAGAAGGAAAAGCTGGTGGAGGTGGCTGTCGAGGAGG
AGGAGGAGGAGAAGAAGGAGGAGGAGGAGGTAGTTGAGGAGGGGAAGAAG
AAGGAGCAAGAGGTGGTGGAGCAGGAGAAGAAAAAAATGATGGAGGGGCA
GAAGATGGAGGAAGTGGTGGTACTAGTAGAGGAGGAAAAGAAGAAGGCGA
CGAACATCGCTAAGAAGATGGTGGCGATGGGGGTCCGGCTGAGTGGAAGC
CTGCATGCAGCATGCCAGAGGGCTCTCCGTGCGTTGAGACTCGTGAAGAA
GGAGGAGGAGGCGAAGGAAGTCGTAGAAGAGGAGACGAAGAATAAGGAGA
TGGTGGTGGAGGAGGAGAAGAAGGAGGTGATGATAGAGGAGGAGAGGAGG
AAGGAGGTGGAGCAGGAGGTAGAAGAAGGGGTGGTACTGGAGGTGAAAGA
CGAGGAGAAGAAGAACGAGGAGGCGAAAAGCTATTTCAGTTTCTTTACCA
CAAAGGTGTCGGAGATGGGGGTCTGGTTGAGGAAGAGCCTGCATGCAACG
TACCAGATGGCTCTTCATGCATTGAGATTCGTGGAGGCGGCTTTGCTCGG
TATTGCGCGACATGCGCATATTTAAAAGAAGAAGAAGAAGAAGAAGAAG
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protein sequence of jgi.p|Nanoce1779_2|604465

>mRNA_8913-protein ID=mRNA_8913-protein|Name=jgi.p|Nanoce1779_2|604465|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MVVEEKKKKKKKKKKKKEEEEKKKEEEATVVVVEETKKEEEEEEKAGVEK
TNKGKVVVMMKEEEVMIMEETKKEKLVEVAVEEEEEEKKEEEEVVEEGKK
KEQEVVEQEKKKMMEGQKMEEVVVLVEEEKKKATNIAKKMVAMGVRLSGS
LHAACQRALRALRLVKKEEEAKEVVEEETKNKEMVVEEEKKEVMIEEERR
KEVEQEVEEGVVLEVKDEEKKNEEAKSYFSFFTTKVSEMGVWLRKSLHAT
YQMALHALRFVEAALLGIARHAHI*
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mRNA from alignment at scaffold_29:176356..177204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8913 ID=mRNA_8913|Name=jgi.p|Nanoce1779_2|604465|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at scaffold_29:176356..177204- (Nannochloropsis oceanica)
ATGGTTGTGGAGGAGAAGAAGAAGAAGAAGAAAAAAAAAAAAAAAAAGAA
GGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGCGACGGTGGTAGTGGTGG
AGGAGACGAAGAAGGAGGAGGAGGAGGAGGAGAAGGCAGGGGTAGAGAAA
ACGAATAAAGGGAAGGTTGTTGTGATGATGAAAGAGGAGGAGGTGATGAT
CATGGAGGAGACGAAGAAGGAAAAGCTGGTGGAGGTGGCTGTCGAGGAGG
AGGAGGAGGAGAAGAAGGAGGAGGAGGAGGTAGTTGAGGAGGGGAAGAAG
AAGGAGCAAGAGGTGGTGGAGCAGGAGAAGAAAAAAATGATGGAGGGGCA
GAAGATGGAGGAAGTGGTGGTACTAGTAGAGGAGGAAAAGAAGAAGGCGA
CGAACATCGCTAAGAAGATGGTGGCGATGGGGGTCCGGCTGAGTGGAAGC
CTGCATGCAGCATGCCAGAGGGCTCTCCGTGCGTTGAGACTCGTGAAGAA
GGAGGAGGAGGCGAAGGAAGTCGTAGAAGAGGAGACGAAGAATAAGGAGA
TGGTGGTGGAGGAGGAGAAGAAGGAGGTGATGATAGAGGAGGAGAGGAGG
AAGGAGGTGGAGCAGGAGGTAGAAGAAGGGGTGGTACTGGAGGTGAAAGA
CGAGGAGAAGAAGAACGAGGAGGCGAAAAGCTATTTCAGTTTCTTTACCA
CAAAGGTGTCGGAGATGGGGGTCTGGTTGAGGAAGAGCCTGCATGCAACG
TACCAGATGGCTCTTCATGCATTGAGATTCGTGGAGGCGGCTTTGCTCGG
TATTGCGCGACATGCGCATATTTAAAAGAAGAAGAAGAAGAAGAAGAAG
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Coding sequence (CDS) from alignment at scaffold_29:176356..177204-

>mRNA_8913 ID=mRNA_8913|Name=jgi.p|Nanoce1779_2|604465|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_29:176356..177204- (Nannochloropsis oceanica)
ATGGTTGTGGAGGAGAAGAAGAAGAAGAAGAAAAAAAAAAAAAAAAAGAA
GGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGCGACGGTGGTAGTGGTGG
AGGAGACGAAGAAGGAGGAGGAGGAGGAGGAGAAGGCAGGGGTAGAGAAA
ACGAATAAAGGGAAGGTTGTTGTGATGATGAAAGAGGAGGAGGTGATGAT
CATGGAGGAGACGAAGAAGGAAAAGCTGGTGGAGGTGGCTGTCGAGGAGG
AGGAGGAGGAGAAGAAGGAGGAGGAGGAGGTAGTTGAGGAGGGGAAGAAG
AAGGAGCAAGAGGTGGTGGAGCAGGAGAAGAAAAAAATGATGGAGGGGCA
GAAGATGGAGGAAGTGGTGGTACTAGTAGAGGAGGAAAAGAAGAAGGCGA
CGAACATCGCTAAGAAGATGGTGGCGATGGGGGTCCGGCTGAGTGGAAGC
CTGCATGCAGCATGCCAGAGGGCTCTCCGTGCGTTGAGACTCGTGAAGAA
GGAGGAGGAGGCGAAGGAAGTCGTAGAAGAGGAGACGAAGAATAAGGAGA
TGGTGGTGGAGGAGGAGAAGAAGGAGGTGATGATAGAGGAGGAGAGGAGG
AAGGAGGTGGAGCAGGAGGTAGAAGAAGGGGTGGTACTGGAGGTGAAAGA
CGAGGAGAAGAAGAACGAGGAGGCGAAAAGCTATTTCAGTTTCTTTACCA
CAAAGGTGTCGGAGATGGGGGTCTGGTTGAGGAAGAGCCTGCATGCAACG
TACCAGATGGCTCTTCATGCATTGAGATTCGTGGAGGCGGCTTTGCTCGG
TATTGCGCGACATGCGCATATTTAA
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Synonyms
Publications