jgi.p|Nanoce1779_2|604456, mRNA_8910 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604456
Unique NamemRNA_8910
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length594
Alignment locationscaffold_29:168583..169508 +

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Properties
Property NameValue
TranscriptId604542
TrackFilteredModels2
ProteinId604456
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:168583..169508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604456gene_8910Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604456mRNA_8910-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8910CDS_8910Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8910 ID=mRNA_8910|Name=jgi.p|Nanoce1779_2|604456|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
CAATAGGATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGC
TGCCAGACGTAATTGCTCCCAAAGGCAACTACGCTCTTTCTGTCCAGACA
GGCAATCTTCTCTTTCTTGCTGGGCACATCCCCTTACCCAAAAGCGGCGT
CCTCATGACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCAAGGACAAG
AAGCCGCACGCATCATTGCCATCAACATACTCGCGACATTGAAAGGAGCC
TTGGGCGATTTGGACAAGATCAAACGCATTGTCAAGCTGGTGGGTTTTGT
GAATTGCGTGGACGGGTACAGCCAGCAGCCGACAGTTGTGAACGGGGCCA
GTGATTTCTTCGTGCAGGTGCTGGGGGAGAAGGGTGTGCATGCCAGGAGT
GCGGTAGGCACGAATGCCTTGCTTCTCAATATACCCGTGGAAATCGAGGC
GATTGTGGAGGTGGAGGAGTAGGAACGAAGAAGGGAAGGAGGGAGGGAAG
GGGAAAGGAGGGATGGATGGATGGATGGATGGAGGGAAGCAGAGAGGGAA
GATTTTTTGAGAAGAGCGAGAGAAAAGAAAAAAAAGAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|604456

>mRNA_8910-protein ID=mRNA_8910-protein|Name=jgi.p|Nanoce1779_2|604456|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MVRVEARLVELGIELPDVIAPKGNYALSVQTGNLLFLAGHIPLPKSGVLM
TGKVGADVTLEQGQEAARIIAINILATLKGALGDLDKIKRIVKLVGFVNC
VDGYSQQPTVVNGASDFFVQVLGEKGVHARSAVGTNALLLNIPVEIEAIV
EVEE*
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mRNA from alignment at scaffold_29:168583..169508+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8910 ID=mRNA_8910|Name=jgi.p|Nanoce1779_2|604456|organism=Nannochloropsis oceanica|type=mRNA|length=926bp|location=Sequence derived from alignment at scaffold_29:168583..169508+ (Nannochloropsis oceanica)
CAATAGGATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGC
TGCCAGACGTAATTGCTCCCAAAGGTCGGTAGCACGTATTCCAGTGTCGT
CGCCTCCCCCGGTCGTAGCCTGACTCCCTTCAGACTGCATTTTCACAACC
TTCTCACACCGCACTCCTCACACCGCACTCCTCACACACCTACCTAGGCA
ACTACGCTCTTTCTGTCCAGACAGGCAATCTTCTCTTTCTTGGTAAGAAA
TGGATGACAATGAGTAGTGGTAGGCAGTGCCTATCACCACTTTCACTTAT
CTTTCCTCCCTTTCCAACCACACATGCAGCTGGGCACATCCCCTTACCCA
AAAGCGGCGTCCTCATGACGGGCAAAGTAGGCGCGGATGTAACACTGGAG
CAAGGACAAGAAGCCGCACGCATCATTGCCATCAACATACTCGCGACATT
GAAAGGAGCCTTGGGCGATTTGGACAAGGTGGACACATCGTCCCTCCCCT
CCTTCACTCCGTCCCTACGTCCCTCTGTCTCTTCTCCCCTATCCATTTCA
CTCAGACACGCCTTCTTTCCTCCCCTCGCCCCCTCCTTTCTCCATCGCAG
ATCAAACGCATTGTCAAGCTGGTGGGTTTTGTGAATTGCGTGGACGGGTA
CAGCCAGCAGCCGACAGTTGTGAACGGGGCCAGTGATTTCTTCGTGCAGG
TGCTGGGGGAGAAGGGTGTGCATGCCAGGAGTGCGGTAGGCACGAATGCC
TTGCTTCTCAATATACCCGTGGAAATCGAGGCGATTGTGGAGGTGGAGGA
GTAGGAACGAAGAAGGGAAGGAGGGAGGGAAGGGGAAAGGAGGGATGGAT
GGATGGATGGATGGAGGGAAGCAGAGAGGGAAGATTTTTTGAGAAGAGCG
AGAGAAAAGAAAAAAAAGAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_29:168583..169508+

>mRNA_8910 ID=mRNA_8910|Name=jgi.p|Nanoce1779_2|604456|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_29:168583..169508+ (Nannochloropsis oceanica)
ATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGCTGCCAGA
CGTAATTGCTCCCAAAGGCAACTACGCTCTTTCTGTCCAGACAGGCAATC
TTCTCTTTCTTGCTGGGCACATCCCCTTACCCAAAAGCGGCGTCCTCATG
ACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCAAGGACAAGAAGCCGC
ACGCATCATTGCCATCAACATACTCGCGACATTGAAAGGAGCCTTGGGCG
ATTTGGACAAGATCAAACGCATTGTCAAGCTGGTGGGTTTTGTGAATTGC
GTGGACGGGTACAGCCAGCAGCCGACAGTTGTGAACGGGGCCAGTGATTT
CTTCGTGCAGGTGCTGGGGGAGAAGGGTGTGCATGCCAGGAGTGCGGTAG
GCACGAATGCCTTGCTTCTCAATATACCCGTGGAAATCGAGGCGATTGTG
GAGGTGGAGGAGTAGATGGTCAGGGTCGAAGCACGACTGGTAGAGCTGGG
CATTGAGCTGCCAGACGTAATTGCTCCCAAAGGCAACTACGCTCTTTCTG
TCCAGACAGGCAATCTTCTCTTTCTTGCTGGGCACATCCCCTTACCCAAA
AGCGGCGTCCTCATGACGGGCAAAGTAGGCGCGGATGTAACACTGGAGCA
AGGACAAGAAGCCGCACGCATCATTGCCATCAACATACTCGCGACATTGA
AAGGAGCCTTGGGCGATTTGGACAAGATCAAACGCATTGTCAAGCTGGTG
GGTTTTGTGAATTGCGTGGACGGGTACAGCCAGCAGCCGACAGTTGTGAA
CGGGGCCAGTGATTTCTTCGTGCAGGTGCTGGGGGAGAAGGGTGTGCATG
CCAGGAGTGCGGTAGGCACGAATGCCTTGCTTCTCAATATACCCGTGGAA
ATCGAGGCGATTGTGGAGGTGGAGGAGTAGATGGTCAGGGTCGAAGCACG
ACTGGTAGAGCTGGGCATTGAGCTGCCAGACGTAATTGCTCCCAAAGGCA
ACTACGCTCTTTCTGTCCAGACAGGCAATCTTCTCTTTCTTGCTGGGCAC
ATCCCCTTACCCAAAAGCGGCGTCCTCATGACGGGCAAAGTAGGCGCGGA
TGTAACACTGGAGCAAGGACAAGAAGCCGCACGCATCATTGCCATCAACA
TACTCGCGACATTGAAAGGAGCCTTGGGCGATTTGGACAAGATCAAACGC
ATTGTCAAGCTGGTGGGTTTTGTGAATTGCGTGGACGGGTACAGCCAGCA
GCCGACAGTTGTGAACGGGGCCAGTGATTTCTTCGTGCAGGTGCTGGGGG
AGAAGGGTGTGCATGCCAGGAGTGCGGTAGGCACGAATGCCTTGCTTCTC
AATATACCCGTGGAAATCGAGGCGATTGTGGAGGTGGAGGAGTAGATGGT
CAGGGTCGAAGCACGACTGGTAGAGCTGGGCATTGAGCTGCCAGACGTAA
TTGCTCCCAAAGGCAACTACGCTCTTTCTGTCCAGACAGGCAATCTTCTC
TTTCTTGCTGGGCACATCCCCTTACCCAAAAGCGGCGTCCTCATGACGGG
CAAAGTAGGCGCGGATGTAACACTGGAGCAAGGACAAGAAGCCGCACGCA
TCATTGCCATCAACATACTCGCGACATTGAAAGGAGCCTTGGGCGATTTG
GACAAGATCAAACGCATTGTCAAGCTGGTGGGTTTTGTGAATTGCGTGGA
CGGGTACAGCCAGCAGCCGACAGTTGTGAACGGGGCCAGTGATTTCTTCG
TGCAGGTGCTGGGGGAGAAGGGTGTGCATGCCAGGAGTGCGGTAGGCACG
AATGCCTTGCTTCTCAATATACCCGTGGAAATCGAGGCGATTGTGGAGGT
GGAGGAGTAG
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Synonyms
Publications