jgi.p|Nanoce1779_2|604431, mRNA_8902 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604431
Unique NamemRNA_8902
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length376
Alignment locationscaffold_29:133632..134007 +

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Properties
Property NameValue
TranscriptId604517
TrackFilteredModels2
ProteinId604431
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:133632..134007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604431gene_8902Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604431mRNA_8902-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8902CDS_8902Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8902 ID=mRNA_8902|Name=jgi.p|Nanoce1779_2|604431|organism=Nannochloropsis oceanica|type=mRNA|length=376bp
TTGTGGCGGATGCAGTACAAGCTCAACACCGGCTGCTGCTGCTCTTGCTT
AACCAAATCGTGCAGCTGTGTTGGTGTGTGTTTGTGTGTAATGAGGTTGA
GTGTATGTGCAGATGGGAGGCATGGCTGATGGTGAGAAGCGAAGTGGGAT
CTCGCGCTTTGCATGTATTTCATTTCACGCTCCTCTTTCTCTACGCCTCT
TCCAGGGCAACACCGCGGCAACATCCCAGCAGCGGCGAAACGCATGAGAG
AGATCTGTGCAGCTATGTGTGTGTCCGTGAACCACCTTATACAGCCAAGG
GCATTGCCCGCGACTGCAGCTAAAGTGAGCCAGGGCAACAACACGCGCAA
GCTCATCCTATCATCCAACAGTAATG
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protein sequence of jgi.p|Nanoce1779_2|604431

>mRNA_8902-protein ID=mRNA_8902-protein|Name=jgi.p|Nanoce1779_2|604431|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MCRWEAWLMVRSEVGSRALHVFHFTLLFLYASSRATPRQHPSSGETHERD
LCSYVCVREPPYTAKGIARDCS*
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mRNA from alignment at scaffold_29:133632..134007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8902 ID=mRNA_8902|Name=jgi.p|Nanoce1779_2|604431|organism=Nannochloropsis oceanica|type=mRNA|length=376bp|location=Sequence derived from alignment at scaffold_29:133632..134007+ (Nannochloropsis oceanica)
TTGTGGCGGATGCAGTACAAGCTCAACACCGGCTGCTGCTGCTCTTGCTT
AACCAAATCGTGCAGCTGTGTTGGTGTGTGTTTGTGTGTAATGAGGTTGA
GTGTATGTGCAGATGGGAGGCATGGCTGATGGTGAGAAGCGAAGTGGGAT
CTCGCGCTTTGCATGTATTTCATTTCACGCTCCTCTTTCTCTACGCCTCT
TCCAGGGCAACACCGCGGCAACATCCCAGCAGCGGCGAAACGCATGAGAG
AGATCTGTGCAGCTATGTGTGTGTCCGTGAACCACCTTATACAGCCAAGG
GCATTGCCCGCGACTGCAGCTAAAGTGAGCCAGGGCAACAACACGCGCAA
GCTCATCCTATCATCCAACAGTAATG
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Coding sequence (CDS) from alignment at scaffold_29:133632..134007+

>mRNA_8902 ID=mRNA_8902|Name=jgi.p|Nanoce1779_2|604431|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_29:133632..134007+ (Nannochloropsis oceanica)
ATGTGCAGATGGGAGGCATGGCTGATGGTGAGAAGCGAAGTGGGATCTCG
CGCTTTGCATGTATTTCATTTCACGCTCCTCTTTCTCTACGCCTCTTCCA
GGGCAACACCGCGGCAACATCCCAGCAGCGGCGAAACGCATGAGAGAGAT
CTGTGCAGCTATGTGTGTGTCCGTGAACCACCTTATACAGCCAAGGGCAT
TGCCCGCGACTGCAGCTAA
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Synonyms
Publications