jgi.p|Nanoce1779_2|604427, mRNA_8900 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604427
Unique NamemRNA_8900
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1415
Alignment locationscaffold_29:130389..131803 +

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Properties
Property NameValue
TranscriptId604513
TrackFilteredModels2
ProteinId604427
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:130389..131803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604427gene_8900Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604427mRNA_8900-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8900CDS_8900Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8900 ID=mRNA_8900|Name=jgi.p|Nanoce1779_2|604427|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp
GGGGAGGGGGGGTGGGGCGCGGGAGATGTGATGATGATTATGGAAAGGGA
AAAGGAACGAGAGAGGGAAAATAGAGAGAGGGAAGGGTCGAGAGACGGTG
AGAGCAACGTCTTTGGTGGAAGCAGCGCCGCTGCGACTGCTGCTGCTGCG
GCCATGAACGGAGGGAAGGGCGTTTTCACGGTTGTCCATGTGTATGTGCC
TAACAAGGCTGTCAGCTTTCTGATTGGAAAAGGCGGGATCAATGTCACGG
CGATCGAGAAGCAGTCGGGTGCACGCTTGGAGTTCACGAGGGAGGCAAGC
CCACCCACAGCGGAGAGGCTGGTGAACATAAAGGGCAATCCGGCAGCTGT
GGAGATCGCCGAGGGCCTCTTAGAAGCGAAGACGCTTGAATGGCAGACAA
GCCCGACTTTGATCCGATAAGGAGAGACGGAGGGACGGAGGGAGAGTTGT
GGCGATAAAGCCTGGTATTTTGTCTTGATCTTTATGTAAGAAAGGTAAGA
GGAAAACGGTATTCTAGTGTGACAAAGGAAATAGGGGGGGGGGGGAGAGA
GAAAGACACATATGATGATTTGAAGCTGAAGTGAGGAGAGATGGAAGGGA
TGAATATGAGCGCCGTGTGATCTGAACCCATGAAGTAGATTGAGGAAGGG
AGACAGTCGAAGAGTTAACCGCTAATATTTAATAGATTCGAGGAATAAAT
GACAGATGTTATACCAGGGGGAGAAGAGAGAGGGAGGAAAAAGTGCTTGG
TGAGATGAAGGTAGGAGAAAACATAGCCCCTCAGCCGGGGATGGGGGATA
GAGGGAAATTTAGACTGTTTTATCTGTCTGATGCCTGTCTGTTAAAAAGA
AGACGAAGGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGACAGAGAGG
GAGAGAGGGAGAGAGAGGGAGTGAAGGAACGGAGGAGGGAAGGGAAAGAA
TGACAGTGAAAACAAGACAGAAGCCTGGATATGAAAGGCGTTATTCAAAA
TGACCCCCCCTCCCACTCGACCAACAGAAGGACAATTGATTGACAACGAC
GACGATGCAGAGGAAAGCATCGAATGGCCCGAAATAGTTGAAGAAGAAGA
TAGAGATAGACGCGCTCCTGTGGTGCCCCGGAAAGGAAATAAATTAAAAT
CAAGCAAGAAGCAGTCGCTATGGAAGGATATAAAGGGGCTATGATAACAA
GAGGAAGGAAACCCCCTACAGACAAACACAAACATAAAAAACAAGGACGA
AAGCGGTGACTATTATGAGGGTGAGGAGGTAAAGCGGAATAAGAATAATC
AAATTTATGACCAAGTGGAATGATGAAAGACGACCCGGAAGACAAAGAGA
AGACTTTGTATACAATGAGCTAGTCACGCAATAGAATGATTCAACCACAA
TATTTTTCACAGAAA
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protein sequence of jgi.p|Nanoce1779_2|604427

>mRNA_8900-protein ID=mRNA_8900-protein|Name=jgi.p|Nanoce1779_2|604427|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MMIMEREKERERENREREGSRDGESNVFGGSSAAATAAAAAMNGGKGVFT
VVHVYVPNKAVSFLIGKGGINVTAIEKQSGARLEFTREASPPTAERLVNI
KGNPAAVEIAEGLLEAKTLEWQTSPTLIR*
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mRNA from alignment at scaffold_29:130389..131803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8900 ID=mRNA_8900|Name=jgi.p|Nanoce1779_2|604427|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_29:130389..131803+ (Nannochloropsis oceanica)
GGGGAGGGGGGGTGGGGCGCGGGAGATGTGATGATGATTATGGAAAGGGA
AAAGGAACGAGAGAGGGAAAATAGAGAGAGGGAAGGGTCGAGAGACGGTG
AGAGCAACGTCTTTGGTGGAAGCAGCGCCGCTGCGACTGCTGCTGCTGCG
GCCATGAACGGAGGGAAGGGCGTTTTCACGGTTGTCCATGTGTATGTGCC
TAACAAGGCTGTCAGCTTTCTGATTGGAAAAGGCGGGATCAATGTCACGG
CGATCGAGAAGCAGTCGGGTGCACGCTTGGAGTTCACGAGGGAGGCAAGC
CCACCCACAGCGGAGAGGCTGGTGAACATAAAGGGCAATCCGGCAGCTGT
GGAGATCGCCGAGGGCCTCTTAGAAGCGAAGACGCTTGAATGGCAGACAA
GCCCGACTTTGATCCGATAAGGAGAGACGGAGGGACGGAGGGAGAGTTGT
GGCGATAAAGCCTGGTATTTTGTCTTGATCTTTATGTAAGAAAGGTAAGA
GGAAAACGGTATTCTAGTGTGACAAAGGAAATAGGGGGGGGGGGGAGAGA
GAAAGACACATATGATGATTTGAAGCTGAAGTGAGGAGAGATGGAAGGGA
TGAATATGAGCGCCGTGTGATCTGAACCCATGAAGTAGATTGAGGAAGGG
AGACAGTCGAAGAGTTAACCGCTAATATTTAATAGATTCGAGGAATAAAT
GACAGATGTTATACCAGGGGGAGAAGAGAGAGGGAGGAAAAAGTGCTTGG
TGAGATGAAGGTAGGAGAAAACATAGCCCCTCAGCCGGGGATGGGGGATA
GAGGGAAATTTAGACTGTTTTATCTGTCTGATGCCTGTCTGTTAAAAAGA
AGACGAAGGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGACAGAGAGG
GAGAGAGGGAGAGAGAGGGAGTGAAGGAACGGAGGAGGGAAGGGAAAGAA
TGACAGTGAAAACAAGACAGAAGCCTGGATATGAAAGGCGTTATTCAAAA
TGACCCCCCCTCCCACTCGACCAACAGAAGGACAATTGATTGACAACGAC
GACGATGCAGAGGAAAGCATCGAATGGCCCGAAATAGTTGAAGAAGAAGA
TAGAGATAGACGCGCTCCTGTGGTGCCCCGGAAAGGAAATAAATTAAAAT
CAAGCAAGAAGCAGTCGCTATGGAAGGATATAAAGGGGCTATGATAACAA
GAGGAAGGAAACCCCCTACAGACAAACACAAACATAAAAAACAAGGACGA
AAGCGGTGACTATTATGAGGGTGAGGAGGTAAAGCGGAATAAGAATAATC
AAATTTATGACCAAGTGGAATGATGAAAGACGACCCGGAAGACAAAGAGA
AGACTTTGTATACAATGAGCTAGTCACGCAATAGAATGATTCAACCACAA
TATTTTTCACAGAAA
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Coding sequence (CDS) from alignment at scaffold_29:130389..131803+

>mRNA_8900 ID=mRNA_8900|Name=jgi.p|Nanoce1779_2|604427|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_29:130389..131803+ (Nannochloropsis oceanica)
ATGATGATTATGGAAAGGGAAAAGGAACGAGAGAGGGAAAATAGAGAGAG
GGAAGGGTCGAGAGACGGTGAGAGCAACGTCTTTGGTGGAAGCAGCGCCG
CTGCGACTGCTGCTGCTGCGGCCATGAACGGAGGGAAGGGCGTTTTCACG
GTTGTCCATGTGTATGTGCCTAACAAGGCTGTCAGCTTTCTGATTGGAAA
AGGCGGGATCAATGTCACGGCGATCGAGAAGCAGTCGGGTGCACGCTTGG
AGTTCACGAGGGAGGCAAGCCCACCCACAGCGGAGAGGCTGGTGAACATA
AAGGGCAATCCGGCAGCTGTGGAGATCGCCGAGGGCCTCTTAGAAGCGAA
GACGCTTGAATGGCAGACAAGCCCGACTTTGATCCGATAA
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Synonyms
Publications