jgi.p|Nanoce1779_2|574534, mRNA_890 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574534
Unique Name	mRNA_890
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1853
Alignment location	scaffold_2:670763..672615 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574620
Track	FilteredModels2
ProteinId	574534

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:670763..672615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574534	gene_890	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574534	mRNA_890-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_890	CDS_890	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:670763..672615+
coding sequence from alignment at scaffold_2:670763..672615+

mRNA sequence

>mRNA_890 ID=mRNA_890|Name=jgi.p|Nanoce1779_2|574534|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp
CCCCCCACCCCCTCCTCCACCCACCTTGCCACATGTGAAAGCAGCGAACG
GTGGAGGGGGAGGAAAGAAGCCCCCTCCACCGCCATCGCTACCACAAGCA
ATCGCACCGCCCCCCCCGTCCATCCATAAGGAGGAAGGAGAGCTAGAGGA
AGGCGAATTGGAGGACGGAGAGATGAAAGACAATGTCAGCGGTACGGCGG
CCACCGTTCCTCCCCCGCATTTTCTTCCTTTTGTGCGCAAGAAAGCTCCA
CAGCCTCCGCCGCCTCCTCCACTCATGTTGTCGACCTCTCAGAGTCGCCC
TCCTCGGCCCGCCCGACCTCCCCCTCCCCCTCCCCCACCACGCGCCTCGT
TAGGCATAAGTTGGAAACCACCGCCGGGAGGTGGTGGTAGCTTGCTGTTG
GCCCCTGATAAAATGGCGCCCTTGCCGCCGTTATTGGGCGCTCCACCGCA
GTACGGGCGAAGCATAGCGTCGTTTCGGGATCGGCAGATGATTGGGAAAG
GCACCTATGGCGAGGTCTCGAAAGCTGTCGACAAGGAAACAGGGGAGACG
GTGGCGTTGAAGAAGATGAGTTTGACTTTGCCGGGGGAAGTGAATCAGAA
GGAAGGGCTGGCGATAACGGCGCTGCGTGAGTTAAAGGTGCTGCAGAAGC
TGCGACATAAGAATGTGGTTGCGCTTAAGGAGGTGGTGACGGAGGAGGAA
CGTCATGCGATCCCCCGAGAGATATATCTGGTGCTTGAATATTGCGAATC
GGACTTGTCGGGGGTGGTGCGCACGTGCTCTCTCCTTGGCCTGCACATTC
GGAGCTACATGTATCAGATTCTCGCGGGTCTTGCGTACATCCAGAGGCAT
GGCCTGTTGCACCGTGATTTAAAAACGGCCAATGTGTTAGTCACCAAGGA
CCACGTCGTTAAAATTGCGGATTGGGGGTTGTGCCGGTGGGAGCCCGAGA
GGGAGCGGGCGAGGTTGACGAACCCGGTGGTGACGCTATGGTATCGGGCC
CCGGAGTTGATGTTGGGGACGGCCAGATATGGCAAGGCGATAGATATGTG
GTCGGCCGGCGCGATTTTCGTCGAATTATTGACGGGGAAGCCTTTTGTGG
AGGGGAGGGAGGAGTTAGATCAGCTGGCCAAAGTATTTGACATCTGCGGG
ACGCCCCATTATGATGGACACTACACGGGCCCAAGGTTCGTGAAGAGAAC
GTCGAGGCTGGCGGAAGAGTTGAGGAGGAGGGGGGTGAGGGATGAGAAGG
CGATTGCGCTGGCGGAGCAGCTGTTGGCAGTCGATCCGAAGAAGAGGCCA
TCAGCGGACGCGGCGGCGGACGATGATTATTTTTGGAGTCCTGACGAGGC
CGGGAATTTCCATGCGCCGAATGAGGATCCGGCGTCGTTGCCGAGGTTGG
TTTCGTTTCGAGCAGGGGTGGATATGAATGATTTGCATGAGTGGAATGTG
AAGAGACGGTAGGATTGTAGGGACAGACAGAGATGGAGGTAAATGAGGAG
GGGGAGAGAGCGAGAAGGAGGGTTGAGTCGAATGGGGGACAGAAAGGTTC
GTATGTAAGTGAAAGTGAGTTAAGTGTCTTAATAGGGATCGATAGAGGAA
CTTAGTAGAAAGAAAGGAAGGAAGGAAGATCTATCCACATCTCTTGGAAG
CCAGTGAGAAACGCGCTGGTTTACACCTTCATTATAGAGAGCAATCAGTA
CTTTTGCCCTAGCACGCATGAAGGAAAAACACACAATAAAAACAAGCAAG
TGATCGAATAAGAAGCACCATGAAGCAGGGGGGACAGCCTAGACACGCGC
CCGCAACAAAATACAAAAATAATTCAAAAGAAAAAACGAATGATCGGTGT
AAA

protein sequence of jgi.p|Nanoce1779_2|574534

>mRNA_890-protein ID=mRNA_890-protein|Name=jgi.p|Nanoce1779_2|574534|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MKDNVSGTAATVPPPHFLPFVRKKAPQPPPPPPLMLSTSQSRPPRPARPP
PPPPPPRASLGISWKPPPGGGGSLLLAPDKMAPLPPLLGAPPQYGRSIAS
FRDRQMIGKGTYGEVSKAVDKETGETVALKKMSLTLPGEVNQKEGLAITA
LRELKVLQKLRHKNVVALKEVVTEEERHAIPREIYLVLEYCESDLSGVVR
TCSLLGLHIRSYMYQILAGLAYIQRHGLLHRDLKTANVLVTKDHVVKIAD
WGLCRWEPERERARLTNPVVTLWYRAPELMLGTARYGKAIDMWSAGAIFV
ELLTGKPFVEGREELDQLAKVFDICGTPHYDGHYTGPRFVKRTSRLAEEL
RRRGVRDEKAIALAEQLLAVDPKKRPSADAAADDDYFWSPDEAGNFHAPN
EDPASLPRLVSFRAGVDMNDLHEWNVKRR*

mRNA from alignment at scaffold_2:670763..672615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_890 ID=mRNA_890|Name=jgi.p|Nanoce1779_2|574534|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at scaffold_2:670763..672615+ (Nannochloropsis oceanica)
CCCCCCACCCCCTCCTCCACCCACCTTGCCACATGTGAAAGCAGCGAACG
GTGGAGGGGGAGGAAAGAAGCCCCCTCCACCGCCATCGCTACCACAAGCA
ATCGCACCGCCCCCCCCGTCCATCCATAAGGAGGAAGGAGAGCTAGAGGA
AGGCGAATTGGAGGACGGAGAGATGAAAGACAATGTCAGCGGTACGGCGG
CCACCGTTCCTCCCCCGCATTTTCTTCCTTTTGTGCGCAAGAAAGCTCCA
CAGCCTCCGCCGCCTCCTCCACTCATGTTGTCGACCTCTCAGAGTCGCCC
TCCTCGGCCCGCCCGACCTCCCCCTCCCCCTCCCCCACCACGCGCCTCGT
TAGGCATAAGTTGGAAACCACCGCCGGGAGGTGGTGGTAGCTTGCTGTTG
GCCCCTGATAAAATGGCGCCCTTGCCGCCGTTATTGGGCGCTCCACCGCA
GTACGGGCGAAGCATAGCGTCGTTTCGGGATCGGCAGATGATTGGGAAAG
GCACCTATGGCGAGGTCTCGAAAGCTGTCGACAAGGAAACAGGGGAGACG
GTGGCGTTGAAGAAGATGAGTTTGACTTTGCCGGGGGAAGTGAATCAGAA
GGAAGGGCTGGCGATAACGGCGCTGCGTGAGTTAAAGGTGCTGCAGAAGC
TGCGACATAAGAATGTGGTTGCGCTTAAGGAGGTGGTGACGGAGGAGGAA
CGTCATGCGATCCCCCGAGAGATATATCTGGTGCTTGAATATTGCGAATC
GGACTTGTCGGGGGTGGTGCGCACGTGCTCTCTCCTTGGCCTGCACATTC
GGAGCTACATGTATCAGATTCTCGCGGGTCTTGCGTACATCCAGAGGCAT
GGCCTGTTGCACCGTGATTTAAAAACGGCCAATGTGTTAGTCACCAAGGA
CCACGTCGTTAAAATTGCGGATTGGGGGTTGTGCCGGTGGGAGCCCGAGA
GGGAGCGGGCGAGGTTGACGAACCCGGTGGTGACGCTATGGTATCGGGCC
CCGGAGTTGATGTTGGGGACGGCCAGATATGGCAAGGCGATAGATATGTG
GTCGGCCGGCGCGATTTTCGTCGAATTATTGACGGGGAAGCCTTTTGTGG
AGGGGAGGGAGGAGTTAGATCAGCTGGCCAAAGTATTTGACATCTGCGGG
ACGCCCCATTATGATGGACACTACACGGGCCCAAGGTTCGTGAAGAGAAC
GTCGAGGCTGGCGGAAGAGTTGAGGAGGAGGGGGGTGAGGGATGAGAAGG
CGATTGCGCTGGCGGAGCAGCTGTTGGCAGTCGATCCGAAGAAGAGGCCA
TCAGCGGACGCGGCGGCGGACGATGATTATTTTTGGAGTCCTGACGAGGC
CGGGAATTTCCATGCGCCGAATGAGGATCCGGCGTCGTTGCCGAGGTTGG
TTTCGTTTCGAGCAGGGGTGGATATGAATGATTTGCATGAGTGGAATGTG
AAGAGACGGTAGGATTGTAGGGACAGACAGAGATGGAGGTAAATGAGGAG
GGGGAGAGAGCGAGAAGGAGGGTTGAGTCGAATGGGGGACAGAAAGGTTC
GTATGTAAGTGAAAGTGAGTTAAGTGTCTTAATAGGGATCGATAGAGGAA
CTTAGTAGAAAGAAAGGAAGGAAGGAAGATCTATCCACATCTCTTGGAAG
CCAGTGAGAAACGCGCTGGTTTACACCTTCATTATAGAGAGCAATCAGTA
CTTTTGCCCTAGCACGCATGAAGGAAAAACACACAATAAAAACAAGCAAG
TGATCGAATAAGAAGCACCATGAAGCAGGGGGGACAGCCTAGACACGCGC
CCGCAACAAAATACAAAAATAATTCAAAAGAAAAAACGAATGATCGGTGT
AAA

Coding sequence (CDS) from alignment at scaffold_2:670763..672615+

>mRNA_890 ID=mRNA_890|Name=jgi.p|Nanoce1779_2|574534|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_2:670763..672615+ (Nannochloropsis oceanica)
ATGAAAGACAATGTCAGCGGTACGGCGGCCACCGTTCCTCCCCCGCATTT
TCTTCCTTTTGTGCGCAAGAAAGCTCCACAGCCTCCGCCGCCTCCTCCAC
TCATGTTGTCGACCTCTCAGAGTCGCCCTCCTCGGCCCGCCCGACCTCCC
CCTCCCCCTCCCCCACCACGCGCCTCGTTAGGCATAAGTTGGAAACCACC
GCCGGGAGGTGGTGGTAGCTTGCTGTTGGCCCCTGATAAAATGGCGCCCT
TGCCGCCGTTATTGGGCGCTCCACCGCAGTACGGGCGAAGCATAGCGTCG
TTTCGGGATCGGCAGATGATTGGGAAAGGCACCTATGGCGAGGTCTCGAA
AGCTGTCGACAAGGAAACAGGGGAGACGGTGGCGTTGAAGAAGATGAGTT
TGACTTTGCCGGGGGAAGTGAATCAGAAGGAAGGGCTGGCGATAACGGCG
CTGCGTGAGTTAAAGGTGCTGCAGAAGCTGCGACATAAGAATGTGGTTGC
GCTTAAGGAGGTGGTGACGGAGGAGGAACGTCATGCGATCCCCCGAGAGA
TATATCTGGTGCTTGAATATTGCGAATCGGACTTGTCGGGGGTGGTGCGC
ACGTGCTCTCTCCTTGGCCTGCACATTCGGAGCTACATGTATCAGATTCT
CGCGGGTCTTGCGTACATCCAGAGGCATGGCCTGTTGCACCGTGATTTAA
AAACGGCCAATGTGTTAGTCACCAAGGACCACGTCGTTAAAATTGCGGAT
TGGGGGTTGTGCCGGTGGGAGCCCGAGAGGGAGCGGGCGAGGTTGACGAA
CCCGGTGGTGACGCTATGGTATCGGGCCCCGGAGTTGATGTTGGGGACGG
CCAGATATGGCAAGGCGATAGATATGTGGTCGGCCGGCGCGATTTTCGTC
GAATTATTGACGGGGAAGCCTTTTGTGGAGGGGAGGGAGGAGTTAGATCA
GCTGGCCAAAGTATTTGACATCTGCGGGACGCCCCATTATGATGGACACT
ACACGGGCCCAAGGTTCGTGAAGAGAACGTCGAGGCTGGCGGAAGAGTTG
AGGAGGAGGGGGGTGAGGGATGAGAAGGCGATTGCGCTGGCGGAGCAGCT
GTTGGCAGTCGATCCGAAGAAGAGGCCATCAGCGGACGCGGCGGCGGACG
ATGATTATTTTTGGAGTCCTGACGAGGCCGGGAATTTCCATGCGCCGAAT
GAGGATCCGGCGTCGTTGCCGAGGTTGGTTTCGTTTCGAGCAGGGGTGGA
TATGAATGATTTGCATGAGTGGAATGTGAAGAGACGGTAG

Synonyms

Publications