jgi.p|Nanoce1779_2|576174, mRNA_89 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576174
Unique NamemRNA_89
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1055
Alignment locationscaffold_3:237883..239440 -

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Properties
Property NameValue
TranscriptId576260
TrackFilteredModels2
ProteinId576174
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:237883..239440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576174gene_89Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576174mRNA_89-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_89CDS_89Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_89 ID=mRNA_89|Name=jgi.p|Nanoce1779_2|576174|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
AACTACAGCAACATCATCAACCAACCAGCAATCATGCTTTCCAACGCCAT
CCGCCAGGCTGCACGTCTGCAACAACGCCGCACTCTGGCCACCAGTGCTG
CAGGCGATGTAGTGTACGGCAAGAGCTTCAGTGCGGCCTGGCTCGGAGAC
AAGGGCGCGTGGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCTTCTG
CGGGGGCTTCATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGCATCA
CGGCCGACAAGCGCAAATCCGATATTCGTACCTGGTCTTGAAATAAATTT
TGGTCTTTTGGTTGACAAGATGACACACTCGCACGACGCCAGCAGTATGT
GTGGGCTAGGTGGTTGTGTTGGTGTAGGAGGAGGGAAGGAGGGAGTGAGT
GAGGAAGGGAGGAAAGTCAAAACAATTGGTGGGTGTTATTCTTATTTGTA
TGAAATTCAAAGAGAGTAGGTAAAGAGCAGAAAGTGAAAAAAGGATGTAA
GGTGTTATCATCCTGGCGGGGGTTGAGGAAGGGACTGGGTGTTACGGATG
AAAAGCAAAAGGGAGGATAGGGCGTTTAAATGGGACACGTGATTACAGGA
CAGAAATTTGGGGGATAGTAGCTTTTGTTGGTGCTCTTGCCTTTTATGAG
AGGGGGATGAGAGCTTTGCTCGTTTCTGTCTGTGAGGGTCTGGACATATG
TTGAAGGAAAGAGAAGAAGTACCAAGCCACCAAAATCATCTTCTACCTTC
TTCTCCTTCCTTTTCTTGTTGATCTTATTATCATCATCATATTGATAATG
TCCTTGTTCTACTTATCCTTTCGGAATACCATTTTTTTCTTTCTCGAACT
TCTCCTCTTTTTTTTCTCCCACACCCGCGAAAGACACAAGGCAGGCAGGT
TACTAGTTACCCGAACCCAGCCTTGCACTCCTTCAGCCTTCCTCTCTGCT
CTTTTTGCCTTTCGATGCACCTATCTCCCTCCCTCCCTCCCTCCCCTCTT
TTCCTCCATTTTCAAGCACACGTATTTATGGTAACGAGCTTCTCGCCGAT
CACAC
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protein sequence of jgi.p|Nanoce1779_2|576174

>mRNA_89-protein ID=mRNA_89-protein|Name=jgi.p|Nanoce1779_2|576174|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MLSNAIRQAARLQQRRTLATSAAGDVVYGKSFSAAWLGDKGAWPVLGIIG
GALVFCGGFISTKLMFHPDVRITADKRKSDIRTWS*
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mRNA from alignment at scaffold_3:237883..239440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_89 ID=mRNA_89|Name=jgi.p|Nanoce1779_2|576174|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp|location=Sequence derived from alignment at scaffold_3:237883..239440- (Nannochloropsis oceanica)
AACTACAGCAACATCATCAACCAACCAGCAATCATGCTTTCCAACGCCAT
CCGCCAGGCTGCACGGTACGTAAGGGCTGGGGGGTGGGAGGAAGCGGACA
TGAAGTCGTGGCCCTTCGGAAGCCATGGATCGGGAGACGTGGAGAGGGTG
ATGAGTGGGAAGAGAAGAGAGGGTGCGAAATGGACGCAGGCTCGATCGTC
ATGCCTGGTCGCTTTGTAGTGCATTGAGAAGCATGGACATAAGATAGTGA
CAGGACGAGGAGCAGCAGGAACGAAGGAGGGAAGCGTAAGACGTGGTCAA
AGTCGTAGCGCTCCAATCGTGTGGAGGCTCTACACCAAGCTAAAAACACC
TGATTAAACTAGCATGTCGCCCCCAACCCCCACACACAGTCTGCAACAAC
GCCGCACTCTGGCCACCAGTGCTGCAGGCGATGTAGTGTACGGCAAGAGC
TTCAGTGCGGCCTGGCTCGGAGACAAGGGTACGTTCTCTTGCCGTGGGTT
TCCCCCCCACTCTGCTAACCCTAACCCTAACCGTGGGTCCCCCCACCCCT
CCGTCCACCTCGTAGCCCTCTCCCCAGAGAAAATCTCCCTCCTTCTCGCT
TACTAGGCACTTAATCGATTTATTTCTCACGCCCCCCATCCATGTCTATG
TCTACAGGCGCGTGGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCTT
CTGCGGGGGCTTCATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGCA
TCACGGCCGACAAGCGCAAATCCGATATTCGTACCTGGTCTTGAAATAAA
TTTTGGTCTTTTGGTTGACAAGATGACACACTCGCACGACGCCAGCAGTA
TGTGTGGGCTAGGTGGTTGTGTTGGTGTAGGAGGAGGGAAGGAGGGAGTG
AGTGAGGAAGGGAGGAAAGTCAAAACAATTGGTGGGTGTTATTCTTATTT
GTATGAAATTCAAAGAGAGTAGGTAAAGAGCAGAAAGTGAAAAAAGGATG
TAAGGTGTTATCATCCTGGCGGGGGTTGAGGAAGGGACTGGGTGTTACGG
ATGAAAAGCAAAAGGGAGGATAGGGCGTTTAAATGGGACACGTGATTACA
GGACAGAAATTTGGGGGATAGTAGCTTTTGTTGGTGCTCTTGCCTTTTAT
GAGAGGGGGATGAGAGCTTTGCTCGTTTCTGTCTGTGAGGGTCTGGACAT
ATGTTGAAGGAAAGAGAAGAAGTACCAAGCCACCAAAATCATCTTCTACC
TTCTTCTCCTTCCTTTTCTTGTTGATCTTATTATCATCATCATATTGATA
ATGTCCTTGTTCTACTTATCCTTTCGGAATACCATTTTTTTCTTTCTCGA
ACTTCTCCTCTTTTTTTTCTCCCACACCCGCGAAAGACACAAGGCAGGCA
GGTTACTAGTTACCCGAACCCAGCCTTGCACTCCTTCAGCCTTCCTCTCT
GCTCTTTTTGCCTTTCGATGCACCTATCTCCCTCCCTCCCTCCCTCCCCT
CTTTTCCTCCATTTTCAAGCACACGTATTTATGGTAACGAGCTTCTCGCC
GATCACAC
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Coding sequence (CDS) from alignment at scaffold_3:237883..239440-

>mRNA_89 ID=mRNA_89|Name=jgi.p|Nanoce1779_2|576174|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_3:237883..239440- (Nannochloropsis oceanica)
GCGCGTGGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCTTCTGCGGG
GGCTTCATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGCATCACGGC
CGACAAGCGCAAATCCGATATTCGTACCTGGTCTTGATCTGCAACAACGC
CGCACTCTGGCCACCAGTGCTGCAGGCGATGTAGTGTACGGCAAGAGCTT
CAGTGCGGCCTGGCTCGGAGACAAGGATGCTTTCCAACGCCATCCGCCAG
GCTGCACGGCGCGTGGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCT
TCTGCGGGGGCTTCATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGC
ATCACGGCCGACAAGCGCAAATCCGATATTCGTACCTGGTCTTGATCTGC
AACAACGCCGCACTCTGGCCACCAGTGCTGCAGGCGATGTAGTGTACGGC
AAGAGCTTCAGTGCGGCCTGGCTCGGAGACAAGGATGCTTTCCAACGCCA
TCCGCCAGGCTGCACGGCGCGTGGCCGGTTTTGGGCATCATCGGCGGTGC
CCTAGTCTTCTGCGGGGGCTTCATTTCCACCAAGTTGATGTTCCATCCCG
ATGTCCGCATCACGGCCGACAAGCGCAAATCCGATATTCGTACCTGGTCT
TGATCTGCAACAACGCCGCACTCTGGCCACCAGTGCTGCAGGCGATGTAG
TGTACGGCAAGAGCTTCAGTGCGGCCTGGCTCGGAGACAAGGATGCTTTC
CAACGCCATCCGCCAGGCTGCACG
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Synonyms
Publications