jgi.p|Nanoce1779_2|604416, mRNA_8898 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604416
Unique Name	mRNA_8898
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	991
Alignment location	scaffold_29:124451..125441 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604502
Track	FilteredModels2
ProteinId	604416

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:124451..125441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604416	gene_8898	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604416	mRNA_8898-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8898	CDS_8898	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:124451..125441+
coding sequence from alignment at scaffold_29:124451..125441+

mRNA sequence

>mRNA_8898 ID=mRNA_8898|Name=jgi.p|Nanoce1779_2|604416|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
CAGTGATGACAAGAGGAAGGAGGGGTGGGTGGGGGTAGACCTGCCGGCGT
TTGCGGCGGGAAGAGGGAGGGAGGGCAGGAGGGAGGCCGGGGGAGACTGA
GGCAGCCGCGGCAGCAGCAGCAGTACTTGGATGGCTGGTGGGCTTGTGAT
GATGGAAAGAGAGGGGGGCGTCGGGCAGGAGGGGGGGCATGGGGAGAGGG
AGAGACAGGCTGTTTATGGCTTGTCGTTCAAGAGGGGGAAGGCCGACGAA
GGGATCGGGAGGGGGAGGATACAGGGCTTGATTCACGCATAAAACGTCTT
CGAGCCATGAGTGGAGAAGGATGTACGCGCAGCCTTCCTCCTCCTCTTCC
TCTTCCTCCTCCTCTCTCTCTCCGTCCTCCTCCTCCTGCTCCTCCTCCTC
CTCCTCCTCCTCGTCCTCCTTGCGCCAGAAGGGGACAAGGGAAGACAACC
GTCTTACCTGCCTTCCCTCCATCCCTTCCTCCCCTCCACTCAATAAAAAT
CCCAGCGCGTCGAGCTCTCTCCTCGTCACCCTCATATCCATCCCTCCCAC
ACTCCCTCCCCCACTCCCTCCCTCCCTTCCTCCCCCACTACTACTACTCT
CCCTGGACGCTGGCGCCGGCCAGCAATCCACCTCATCCCCTCCTCCCTCC
CTCCCATGCCCCCCTCTTCCGCCACCACTCCCCACATAGGTTCCCCTCGC
CAAAAGCCACTCCTGTGCCTCACCCTGCTTCCCTCCGTCCCTCCCTCCCT
CGACCACCAGCACCTGGTGCATGTCCATTAACATATCTTTGAAATGCTTT
TTCATAAAGGACACATGATAAGCTTCTGCCTTAATCTCGTTCTGGATCTG
AAAATACGATCGAGGACTCATCGGGCTTGTCCCTCCCAACATTCCACCTT
CCCTCCCTCCCCCCCCCACAGGAGTATGCATAGGCGTCGGTGTCGACATC
ATCATTGACAATCCCCCCTCCCTCCCTCCCTCCCTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|604416

>mRNA_8898-protein ID=mRNA_8898-protein|Name=jgi.p|Nanoce1779_2|604416|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSGEGCTRSLPPPLPLPPPLSLRPPPPAPPPPPPPRPPCARRGQGKTTVL
PAFPPSLPPLHSIKIPARRALSSSPSYPSLPHSLPHSLPPFLPHYYYSPW
TLAPASNPPHPLLPPSHAPLFRHHSPHRFPSPKATPVPHPASLRPSLPRP
PAPGACPLTYL*

mRNA from alignment at scaffold_29:124451..125441+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8898 ID=mRNA_8898|Name=jgi.p|Nanoce1779_2|604416|organism=Nannochloropsis oceanica|type=mRNA|length=991bp|location=Sequence derived from alignment at scaffold_29:124451..125441+ (Nannochloropsis oceanica)
CAGTGATGACAAGAGGAAGGAGGGGTGGGTGGGGGTAGACCTGCCGGCGT
TTGCGGCGGGAAGAGGGAGGGAGGGCAGGAGGGAGGCCGGGGGAGACTGA
GGCAGCCGCGGCAGCAGCAGCAGTACTTGGATGGCTGGTGGGCTTGTGAT
GATGGAAAGAGAGGGGGGCGTCGGGCAGGAGGGGGGGCATGGGGAGAGGG
AGAGACAGGCTGTTTATGGCTTGTCGTTCAAGAGGGGGAAGGCCGACGAA
GGGATCGGGAGGGGGAGGATACAGGGCTTGATTCACGCATAAAACGTCTT
CGAGCCATGAGTGGAGAAGGATGTACGCGCAGCCTTCCTCCTCCTCTTCC
TCTTCCTCCTCCTCTCTCTCTCCGTCCTCCTCCTCCTGCTCCTCCTCCTC
CTCCTCCTCCTCGTCCTCCTTGCGCCAGAAGGGGACAAGGGAAGACAACC
GTCTTACCTGCCTTCCCTCCATCCCTTCCTCCCCTCCACTCAATAAAAAT
CCCAGCGCGTCGAGCTCTCTCCTCGTCACCCTCATATCCATCCCTCCCAC
ACTCCCTCCCCCACTCCCTCCCTCCCTTCCTCCCCCACTACTACTACTCT
CCCTGGACGCTGGCGCCGGCCAGCAATCCACCTCATCCCCTCCTCCCTCC
CTCCCATGCCCCCCTCTTCCGCCACCACTCCCCACATAGGTTCCCCTCGC
CAAAAGCCACTCCTGTGCCTCACCCTGCTTCCCTCCGTCCCTCCCTCCCT
CGACCACCAGCACCTGGTGCATGTCCATTAACATATCTTTGAAATGCTTT
TTCATAAAGGACACATGATAAGCTTCTGCCTTAATCTCGTTCTGGATCTG
AAAATACGATCGAGGACTCATCGGGCTTGTCCCTCCCAACATTCCACCTT
CCCTCCCTCCCCCCCCCACAGGAGTATGCATAGGCGTCGGTGTCGACATC
ATCATTGACAATCCCCCCTCCCTCCCTCCCTCCCTCCCTCC

Coding sequence (CDS) from alignment at scaffold_29:124451..125441+

>mRNA_8898 ID=mRNA_8898|Name=jgi.p|Nanoce1779_2|604416|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_29:124451..125441+ (Nannochloropsis oceanica)
ATGAGTGGAGAAGGATGTACGCGCAGCCTTCCTCCTCCTCTTCCTCTTCC
TCCTCCTCTCTCTCTCCGTCCTCCTCCTCCTGCTCCTCCTCCTCCTCCTC
CTCCTCGTCCTCCTTGCGCCAGAAGGGGACAAGGGAAGACAACCGTCTTA
CCTGCCTTCCCTCCATCCCTTCCTCCCCTCCACTCAATAAAAATCCCAGC
GCGTCGAGCTCTCTCCTCGTCACCCTCATATCCATCCCTCCCACACTCCC
TCCCCCACTCCCTCCCTCCCTTCCTCCCCCACTACTACTACTCTCCCTGG
ACGCTGGCGCCGGCCAGCAATCCACCTCATCCCCTCCTCCCTCCCTCCCA
TGCCCCCCTCTTCCGCCACCACTCCCCACATAGGTTCCCCTCGCCAAAAG
CCACTCCTGTGCCTCACCCTGCTTCCCTCCGTCCCTCCCTCCCTCGACCA
CCAGCACCTGGTGCATGTCCATTAACATATCTTTGA

Synonyms

Publications