jgi.p|Nanoce1779_2|604414, mRNA_8897 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604414
Unique NamemRNA_8897
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1317
Alignment locationscaffold_29:122799..124330 -

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Properties
Property NameValue
TranscriptId604500
TrackFilteredModels2
ProteinId604414
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:122799..124330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604414gene_8897Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604414mRNA_8897-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8897CDS_8897Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8897 ID=mRNA_8897|Name=jgi.p|Nanoce1779_2|604414|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
TCCCCCGGTCCCTCCCCCTTCGTCGTGTCTTCATCCAAGCCTGTCATGAT
GCGAATATTTATCTACTTGGGCCTATGGAAGGTGCTCATATCGCCGCGTG
TACAGACAGCACCATCGTCCTCGGCGCAGTGTCTGGGCTGGTGCGCGTGA
GCAACTGCGAGCGTCTCACTCTGGTGTGTGCTGGTCGTAGGCTGGTCATC
TGCAACTGCCTCGATTCGATCTTCCCGGTGTATCTCTCCCTCCCTCCCGT
CCTCGCAGGCGACAACAGGGGTTGCCGCCTGGCCCCATATAACACAGCCT
ACCCCTCTCTCGCCCACGATCTCGCCGCTGCCGGCCTTTGGTCGGTGGCG
AAGGAAGGGAAGGGGCAGGAGCTGCAGGAGCTGCAGCCAAATCAGTGGAA
TGCGCCGTTGGATTTGGCCGCGGGAAATTATGCAAAGGGAGGAGGAGGGG
AGGGAGGGATTGGGGTAGTAAGGGAAGGGAGCAGTGGTGGTAGTGCGGGA
GGGGGAGGGATAGGAGGAGGAGTGTCTCCTTGCTCCAGTCCCGGACCAGA
GAGCGGAGGCAGCAGAGGAGGGGAGAGTCTGATTCTTGCCCCAGAGCTGT
ACTACACCCTTTCCATCCCTGTCTCTCTCCCTCCCTCCTTCCCTCCCTGC
TCCACTGCTCACCCCGACCATCCGATGGAGGGCGGCATTGGGGGTCTCCG
CTTCTCGCCCTCCCTTCTTCCGGCCCTGTACCGGAACCCATTTCCTCTCC
CGTTAGAATACGCCTCCGTTCTTCGCGAACGATCCACGAACCTTGATAGG
CTACAGCAATCTGTTTTGGGTTCGCTAACGGTCGATCAACGGCCGGGGGT
AGAAACTGTGGTTGTCAAGTAAGCCCTCCTTTCGTCCCTCTCTCTTTCCC
TCCCTACTTTTTCCTGTCCTGCAGCAGTTCGTCCTTACATTTTGCTCTTT
TTTTCATTTTTATATTTTATTTTATTTTTTATTTTAAATTGTGAATTCCC
TTTCTCACGTCCATCTCACTTTCTCTCTCTCTCTCTTCCTTTCCTTCCCC
AGTAAATTTTATGAGTGGCTGGCTGCTTCGGGGAACCTTCGCCAGGTTCT
TGATTTGATCCGATTGGAAGGAAATGAACAGCTACAACGGCTGGAAGGAG
GGAGGTATGGAGGGAAGGAGGATGAGGTCGATGAAAGGGAAGACGATGTG
ATGGTGGCTGGAGAGATGGAAGGGGTGGAGGGAGGGAGGGAAGGAGGGAT
GGCGGCGCCGTCGGGTGGATTGATTGGAAGAATAGTTGCGGAGCACGAGC
AGCATGCAGCGCATCAC
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protein sequence of jgi.p|Nanoce1779_2|604414

>mRNA_8897-protein ID=mRNA_8897-protein|Name=jgi.p|Nanoce1779_2|604414|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MEGAHIAACTDSTIVLGAVSGLVRVSNCERLTLVCAGRRLVICNCLDSIF
PVYLSLPPVLAGDNRGCRLAPYNTAYPSLAHDLAAAGLWSVAKEGKGQEL
QELQPNQWNAPLDLAAGNYAKGGGGEGGIGVVREGSSGGSAGGGGIGGGV
SPCSSPGPESGGSRGGESLILAPELYYTLSIPVSLPPSFPPCSTAHPDHP
MEGGIGGLRFSPSLLPALYRNPFPLPLEYASVLRERSTNLDRLQQSVLGS
LTVDQRPGVETVVVK*
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mRNA from alignment at scaffold_29:122799..124330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8897 ID=mRNA_8897|Name=jgi.p|Nanoce1779_2|604414|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at scaffold_29:122799..124330- (Nannochloropsis oceanica)
TCCCCCGGTCCCTCCCCCTTCGTCGTGTCTTCATCCAAGCCTGTCATGAT
GCGAATATTTATCTACTTGGGCCTATGGAAGGTGCTCATATCGCCGCGTG
TACAGACAGCACCATCGTCCTCGGCGCAGTGTCTGGTATGTCCTCCCTCC
CTCCCTTCTTCCCCCCCTCCCTCCCTTCCTTTCTCCCTATACTGCGAAAG
CCTGTGAAATACAGGACGCAATTATTATAGCGTGGATTCGGCTTTGGATT
GTGGATTCAGTAATTATTTCTTATATTCAGTCATTGGTTGCTTGATTGAT
TTACAGATCATTCACCATATTACAATTACCTATGTGCCTTCACCCTACAG
GGCTGGTGCGCGTGAGCAACTGCGAGCGTCTCACTCTGGTGTGTGCTGGT
CGTAGGCTGGTCATCTGCAACTGCCTCGATTCGATCTTCCCGGTGTATCT
CTCCCTCCCTCCCGTCCTCGCAGGCGACAACAGGGGTTGCCGCCTGGCCC
CATATAACACAGCCTACCCCTCTCTCGCCCACGATCTCGCCGCTGCCGGC
CTTTGGTCGGTGGCGAAGGAAGGGAAGGGGCAGGAGCTGCAGGAGCTGCA
GCCAAATCAGTGGAATGCGCCGTTGGATTTGGCCGCGGGAAATTATGCAA
AGGGAGGAGGAGGGGAGGGAGGGATTGGGGTAGTAAGGGAAGGGAGCAGT
GGTGGTAGTGCGGGAGGGGGAGGGATAGGAGGAGGAGTGTCTCCTTGCTC
CAGTCCCGGACCAGAGAGCGGAGGCAGCAGAGGAGGGGAGAGTCTGATTC
TTGCCCCAGAGCTGTACTACACCCTTTCCATCCCTGTCTCTCTCCCTCCC
TCCTTCCCTCCCTGCTCCACTGCTCACCCCGACCATCCGATGGAGGGCGG
CATTGGGGGTCTCCGCTTCTCGCCCTCCCTTCTTCCGGCCCTGTACCGGA
ACCCATTTCCTCTCCCGTTAGAATACGCCTCCGTTCTTCGCGAACGATCC
ACGAACCTTGATAGGCTACAGCAATCTGTTTTGGGTTCGCTAACGGTCGA
TCAACGGCCGGGGGTAGAAACTGTGGTTGTCAAGTAAGCCCTCCTTTCGT
CCCTCTCTCTTTCCCTCCCTACTTTTTCCTGTCCTGCAGCAGTTCGTCCT
TACATTTTGCTCTTTTTTTCATTTTTATATTTTATTTTATTTTTTATTTT
AAATTGTGAATTCCCTTTCTCACGTCCATCTCACTTTCTCTCTCTCTCTC
TTCCTTTCCTTCCCCAGTAAATTTTATGAGTGGCTGGCTGCTTCGGGGAA
CCTTCGCCAGGTTCTTGATTTGATCCGATTGGAAGGAAATGAACAGCTAC
AACGGCTGGAAGGAGGGAGGTATGGAGGGAAGGAGGATGAGGTCGATGAA
AGGGAAGACGATGTGATGGTGGCTGGAGAGATGGAAGGGGTGGAGGGAGG
GAGGGAAGGAGGGATGGCGGCGCCGTCGGGTGGATTGATTGGAAGAATAG
TTGCGGAGCACGAGCAGCATGCAGCGCATCAC
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Coding sequence (CDS) from alignment at scaffold_29:122799..124330-

>mRNA_8897 ID=mRNA_8897|Name=jgi.p|Nanoce1779_2|604414|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_29:122799..124330- (Nannochloropsis oceanica)
GGCTGGTGCGCGTGAGCAACTGCGAGCGTCTCACTCTGGTGTGTGCTGGT
CGTAGGCTGGTCATCTGCAACTGCCTCGATTCGATCTTCCCGGTGTATCT
CTCCCTCCCTCCCGTCCTCGCAGGCGACAACAGGGGTTGCCGCCTGGCCC
CATATAACACAGCCTACCCCTCTCTCGCCCACGATCTCGCCGCTGCCGGC
CTTTGGTCGGTGGCGAAGGAAGGGAAGGGGCAGGAGCTGCAGGAGCTGCA
GCCAAATCAGTGGAATGCGCCGTTGGATTTGGCCGCGGGAAATTATGCAA
AGGGAGGAGGAGGGGAGGGAGGGATTGGGGTAGTAAGGGAAGGGAGCAGT
GGTGGTAGTGCGGGAGGGGGAGGGATAGGAGGAGGAGTGTCTCCTTGCTC
CAGTCCCGGACCAGAGAGCGGAGGCAGCAGAGGAGGGGAGAGTCTGATTC
TTGCCCCAGAGCTGTACTACACCCTTTCCATCCCTGTCTCTCTCCCTCCC
TCCTTCCCTCCCTGCTCCACTGCTCACCCCGACCATCCGATGGAGGGCGG
CATTGGGGGTCTCCGCTTCTCGCCCTCCCTTCTTCCGGCCCTGTACCGGA
ACCCATTTCCTCTCCCGTTAGAATACGCCTCCGTTCTTCGCGAACGATCC
ACGAACCTTGATAGGCTACAGCAATCTGTTTTGGGTTCGCTAACGGTCGA
TCAACGGCCGGGGGTAGAAACTGTGGTTGTCAAGTAAATGGAAGGTGCTC
ATATCGCCGCGTGTACAGACAGCACCATCGTCCTCGGCGCAGTGTCTGGG
CTGGTGCGCGTGAGCAACTGCGAGCGTCTCACTCTGGTGTGTGCTGGTCG
TAGGCTGGTCATCTGCAACTGCCTCGATTCGATCTTCCCGGTGTATCTCT
CCCTCCCTCCCGTCCTCGCAGGCGACAACAGGGGTTGCCGCCTGGCCCCA
TATAACACAGCCTACCCCTCTCTCGCCCACGATCTCGCCGCTGCCGGCCT
TTGGTCGGTGGCGAAGGAAGGGAAGGGGCAGGAGCTGCAGGAGCTGCAGC
CAAATCAGTGGAATGCGCCGTTGGATTTGGCCGCGGGAAATTATGCAAAG
GGAGGAGGAGGGGAGGGAGGGATTGGGGTAGTAAGGGAAGGGAGCAGTGG
TGGTAGTGCGGGAGGGGGAGGGATAGGAGGAGGAGTGTCTCCTTGCTCCA
GTCCCGGACCAGAGAGCGGAGGCAGCAGAGGAGGGGAGAGTCTGATTCTT
GCCCCAGAGCTGTACTACACCCTTTCCATCCCTGTCTCTCTCCCTCCCTC
CTTCCCTCCCTGCTCCACTGCTCACCCCGACCATCCGATGGAGGGCGGCA
TTGGGGGTCTCCGCTTCTCGCCCTCCCTTCTTCCGGCCCTGTACCGGAAC
CCATTTCCTCTCCCGTTAGAATACGCCTCCGTTCTTCGCGAACGATCCAC
GAACCTTGATAGGCTACAGCAATCTGTTTTGGGTTCGCTAACGGTCGATC
AACGGCCGGGGGTAGAAACTGTGGTTGTCAAGTAAATGGAAGGTGCTCAT
ATCGCCGCGTGTACAGACAGCACCATCGTCCTCGGCGCAGTGTCTG
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Synonyms
Publications