jgi.p|Nanoce1779_2|633210, mRNA_8896 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633210
Unique NamemRNA_8896
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3018
Alignment locationscaffold_29:118764..121781 -

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Properties
Property NameValue
TranscriptId633296
TrackFilteredModels2
ProteinId633210
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:118764..121781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633210gene_8896Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633210mRNA_8896-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8896CDS_8896Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8896 ID=mRNA_8896|Name=jgi.p|Nanoce1779_2|633210|organism=Nannochloropsis oceanica|type=mRNA|length=3018bp
ACAGGCATAAAAGAAGAAGAAGGAGAAGAAGAAGCTAGCCTCCCCACCCT
CGCTCGCTTTCTCTCAATCAAGCACCATGGCTGCTGCCCTCGCCCTCAAC
GCGCCCCTGCTGGGTGTCGACTCCGATTCGGAAGAAGAGGATGAGGAGAT
TGTGCCCATGTCCGCAGAGATTGCCCTGTCGCGTGGCAGCACGCTTCTTC
CACCCGGCAGCATCACCCCCCTAGGCAGCAGCAGCAACGCGGTGGCAGCC
AGCAGCAGCACTGCCAGCGCGGCTGTAAAGCGCCGGCAAAGCCTAGGTGG
AGCCGCATTATCTACAGCATTTACTGAGACACAGCTGTTGTCGGCCTCGG
ATCGCTTTCGAGATGCCTGGGCCAGAGTCCAAGCTAACGAGTGGGACGTG
CGGGCGTGGACTGCCATCCTCAGCGAAGCGCAGACACAACGCTCCGGCCG
TGCCATCGCCTTGCGTGATGTTTACAAGCTTGCGACGCGTCAATTTCCTA
CCATGGCGACGCTGTGGAAGGACTGGTTGGAGCATGAAATGAGACAAGGG
AATTTCGCAGAAGTAGACAATATTTTTCGTCAATGCCTCCTGGAAGTCCC
CTCGGTCGACCTCTACCTCCTCTATGTGGCGCGTGTCCGCAAAACTAATC
CTGCATCTCTAGGGGATGGAGCGTCGCCTGATGTGGTGGCGGAGCAGCGG
GAGCGAGTGACGGCTGCATTTGAGTTGGCCGTGAGACAAGTGGGAGTGCT
GGTGGACGCAGCGCCGTTGTGGTGGGATTACATTCGGTATGTTGAGGCTT
GGAGGGACGAGGGGGGAAGGGAAGATGGGGGCAGTTATGGTGCGGTGGCG
GAGGCGGGGTCGAAGATAGCGACGTTAAGGAAAGTATACCACCGAGCTGT
GCTGGTGCCGTTGGATGGGCTGGACGAGTTGTGGCGTGCCTATGAAGCGT
GGGAGAAGGGATTGAACGAGCACACAGCGAGGCAGACATTACCGCAATTG
CTGCCTGGGTATCAGCAGGCGAAGACCGTGGCGAGGGAGAGGAGGACGTT
GCTTGACTTGCCCAAAGTGAGTAAATGGGCCGTTCCCCCTTCAGAGGCCG
CGGAGGAGAAGGAGCAATTGCATCTTTTCCGGCGAAAGATCGATTTTGAG
AAGGGAAACCCCGAGAATGTGGATCCGGTAGCACTGAAAGATAGGGTGCG
ATTGGCGTATAGGCAGGGTTTTGCTTATTTTTATCATTTCCCGGAGGTAT
GGTTTGAGTTTGCCTTGTACGAGCAAGAGAGCGATGATGTCGCTGCTGCT
GCTTCTCTCTTCGCCCGTGCCACGCGGGCGGTGCCGGACTGTTTACTGCT
GCACTTAGCATGGGCAGAATTAGAGGAGGGGAGGGGGAGGGCTGAAAAGG
GCGTGGAGGTGTTGAAGGGCTTCTTGACCCGAGAACCAAGCACACTGGGG
TACATTGCATACCAACATTTCGTGAGGAGGACGCTGGGGAAGGAAGCTGC
AAGGAAGGTGTTCACAAGCACGAAGGACTTGAGAAGGAAAGGTGTCTTGG
GGTATCAGTGGTATTTGGCACACGCGCGGTTGGAGCAGCACGTGAATCAA
GAGGAAGAGGTGGCGCGGAAGGTCCTCGATCATGGTCTCTCCCAGCATTC
CTCGTTTTTATTGGAGCCTGACTACGTCATAGCCACGATGGATCTACTCA
TCTCCCTCCACGATGAACAAAACGTCCGTGGCCTGGCAGACCGGGCTCTC
GCCGTGCTCGACGCCGCGCCCGCAGCGGCTGTTGCTGCACCTGGAGGAGA
GCGGGAAGAGGTGGCATCGGCCGCAGCAGCGATGGCAGCAGCAGAGAAGG
CAAGACCGATTTGGTTGAAGCTGCTGGAGTTTGAGATGTGCTTTGCCAGT
GATCGCGACCCTTCGAGGGTGGAAAAGGTCCAGAAGAGAATAGCAGAAGC
GTACCCACGACAAGCGGAGCCACATCCTTTCCTGCGGCTGTGGAGGAGGG
TGAACATGTTGAAGGCAGCACCTGCATCAGAGGGGTCGGATGACCTATTA
AGGCAGAGATGGGACGAGCCCCGGGTCAGTTACGGGCTAGCGGAGGAGGG
AGGGAGGGAGGGAGGGATAAGTGGGGGGAGAGGTGGTGGAAGGGGGGCAG
GGAAGAGGAATGGAGGGAAGACAGGAGGGGCGTCGGCGGCGGCACTGGCG
GCAGCATCAGCAGCGGCAGTGGCGGCGGAGGGAGTAGGGACGTTGTCGGC
AGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGACGGAGGAGAAATAA
GTGGCGGTGGGGATCCGAGAGCAGCAGCAGCGTTAGCGGCAAGAGAGGGA
CGGACGAGGAGAGAGGACCCTCATGGAGCAAAGGCGCTACAGCAACGGCG
ATTGCAGAGTATTCCTGAGTATTTGCGTCGGCTTTATCAGATCTTGCCCA
TCCATACAGGTCCTCCCATAGACCCCGATACCATCATAAGGGGTTTGAGA
GAGACACCGTTGCCACCTCGTCCACCGGGACCAGCGCATGGTTCCTCTTC
AGGGGCTCTAGGAGAGAGGGAGAGGGGAGGGAGGGGAGGAAGAGCGGGGG
GGAGGAAGAGGGGGAGGTACGGGGGTGGGGGGGATTCGGATAGTGGGGGA
AGTGATGATGACATGATGAGGACAGGGACTCGAGATGTGTTTCGACAGCG
ACAGCAGGAGAAATTGATGAACGAGGCGTTACAGGGCTAGGAGGGCGGGA
GGGAGGGAGGGAGGGAGAGGCGGGAGGGAGAGAGGGAGGGATATCGAGGG
GCGAATGGAGTCAATCGGAGAGCTCCAAAGGACGATAGACGTAAACAAAG
AGTGAAAGAAGCGTATTAAGACGAGACCAAAAGACTTTTCATCAAAGTTC
TAGGTCAGGGATTTCACTCCATTCCTCTATGCTCCGACTCTCGACAGGTG
TAAACAGACACGAGTCAGAGAAATGATGCACAATAGAAAAACAAGGAAGG
CAAACAATCGTTTTTTTC
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protein sequence of jgi.p|Nanoce1779_2|633210

>mRNA_8896-protein ID=mRNA_8896-protein|Name=jgi.p|Nanoce1779_2|633210|organism=Nannochloropsis oceanica|type=polypeptide|length=888bp
MAAALALNAPLLGVDSDSEEEDEEIVPMSAEIALSRGSTLLPPGSITPLG
SSSNAVAASSSTASAAVKRRQSLGGAALSTAFTETQLLSASDRFRDAWAR
VQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDW
LEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGAS
PDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGRED
GGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHT
ARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHL
FRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQ
ESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFL
TREPSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHA
RLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNV
RGLADRALAVLDAAPAAAVAAPGGEREEVASAAAAMAAAEKARPIWLKLL
EFEMCFASDRDPSRVEKVQKRIAEAYPRQAEPHPFLRLWRRVNMLKAAPA
SEGSDDLLRQRWDEPRVSYGLAEEGGREGGISGGRGGGRGAGKRNGGKTG
GASAAALAAASAAAVAAEGVGTLSAEGGREGGREEGDGGEISGGGDPRAA
AALAAREGRTRREDPHGAKALQQRRLQSIPEYLRRLYQILPIHTGPPIDP
DTIIRGLRETPLPPRPPGPAHGSSSGALGERERGGRGGRAGGRKRGRYGG
GGDSDSGGSDDDMMRTGTRDVFRQRQQEKLMNEALQG*
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mRNA from alignment at scaffold_29:118764..121781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8896 ID=mRNA_8896|Name=jgi.p|Nanoce1779_2|633210|organism=Nannochloropsis oceanica|type=mRNA|length=3018bp|location=Sequence derived from alignment at scaffold_29:118764..121781- (Nannochloropsis oceanica)
ACAGGCATAAAAGAAGAAGAAGGAGAAGAAGAAGCTAGCCTCCCCACCCT CGCTCGCTTTCTCTCAATCAAGCACCATGGCTGCTGCCCTCGCCCTCAAC GCGCCCCTGCTGGGTGTCGACTCCGATTCGGAAGAAGAGGATGAGGAGAT TGTGCCCATGTCCGCAGAGATTGCCCTGTCGCGTGGCAGCACGCTTCTTC CACCCGGCAGCATCACCCCCCTAGGCAGCAGCAGCAACGCGGTGGCAGCC AGCAGCAGCACTGCCAGCGCGGCTGTAAAGCGCCGGCAAAGCCTAGGTGG AGCCGCATTATCTACAGCATTTACTGAGACACAGCTGTTGTCGGCCTCGG ATCGCTTTCGAGATGCCTGGGCCAGAGTCCAAGCTAACGAGTGGGACGTG CGGGCGTGGACTGCCATCCTCAGCGAAGCGCAGACACAACGCTCCGGCCG TGCCATCGCCTTGCGTGATGTTTACAAGCTTGCGACGCGTCAATTTCCTA CCATGGCGACGCTGTGGAAGGACTGGTTGGAGCATGAAATGAGACAAGGG AATTTCGCAGAAGTAGACAATATTTTTCGTCAATGCCTCCTGGAAGTCCC CTCGGTCGACCTCTACCTCCTCTATGTGGCGCGTGTCCGCAAAACTAATC CTGCATCTCTAGGGGATGGAGCGTCGCCTGATGTGGTGGCGGAGCAGCGG GAGCGAGTGACGGCTGCATTTGAGTTGGCCGTGAGACAAGTGGGAGTGCT GGTGGACGCAGCGCCGTTGTGGTGGGATTACATTCGGTATGTTGAGGCTT GGAGGGACGAGGGGGGAAGGGAAGATGGGGGCAGTTATGGTGCGGTGGCG GAGGCGGGGTCGAAGATAGCGACGTTAAGGAAAGTATACCACCGAGCTGT GCTGGTGCCGTTGGATGGGCTGGACGAGTTGTGGCGTGCCTATGAAGCGT GGGAGAAGGGATTGAACGAGCACACAGCGAGGCAGACATTACCGCAATTG CTGCCTGGGTATCAGCAGGCGAAGACCGTGGCGAGGGAGAGGAGGACGTT GCTTGACTTGCCCAAAGTGAGTAAATGGGCCGTTCCCCCTTCAGAGGCCG CGGAGGAGAAGGAGCAATTGCATCTTTTCCGGCGAAAGATCGATTTTGAG AAGGGAAACCCCGAGAATGTGGATCCGGTAGCACTGAAAGATAGGGTGCG ATTGGCGTATAGGCAGGGTTTTGCTTATTTTTATCATTTCCCGGAGGTAT GGTTTGAGTTTGCCTTGTACGAGCAAGAGAGCGATGATGTCGCTGCTGCT GCTTCTCTCTTCGCCCGTGCCACGCGGGCGGTGCCGGACTGTTTACTGCT GCACTTAGCATGGGCAGAATTAGAGGAGGGGAGGGGGAGGGCTGAAAAGG GCGTGGAGGTGTTGAAGGGCTTCTTGACCCGAGAACCAAGCACACTGGGG TACATTGCATACCAACATTTCGTGAGGAGGACGCTGGGGAAGGAAGCTGC AAGGAAGGTGTTCACAAGCACGAAGGACTTGAGAAGGAAAGGTGTCTTGG GGTATCAGTGGTATTTGGCACACGCGCGGTTGGAGCAGCACGTGAATCAA GAGGAAGAGGTGGCGCGGAAGGTCCTCGATCATGGTCTCTCCCAGCATTC CTCGTTTTTATTGGAGCCTGACTACGTCATAGCCACGATGGATCTACTCA TCTCCCTCCACGATGAACAAAACGTCCGTGGCCTGGCAGACCGGGCTCTC GCCGTGCTCGACGCCGCGCCCGCAGCGGCTGTTGCTGCACCTGGAGGAGA GCGGGAAGAGGTGGCATCGGCCGCAGCAGCGATGGCAGCAGCAGAGAAGG CAAGACCGATTTGGTTGAAGCTGCTGGAGTTTGAGATGTGCTTTGCCAGT GATCGCGACCCTTCGAGGGTGGAAAAGGTCCAGAAGAGAATAGCAGAAGC GTACCCACGACAAGCGGAGCCACATCCTTTCCTGCGGCTGTGGAGGAGGG TGAACATGTTGAAGGCAGCACCTGCATCAGAGGGGTCGGATGACCTATTA AGGCAGAGATGGGACGAGCCCCGGGTCAGTTACGGGCTAGCGGAGGAGGG AGGGAGGGAGGGAGGGATAAGTGGGGGGAGAGGTGGTGGAAGGGGGGCAG GGAAGAGGAATGGAGGGAAGACAGGAGGGGCGTCGGCGGCGGCACTGGCG GCAGCATCAGCAGCGGCAGTGGCGGCGGAGGGAGTAGGGACGTTGTCGGC AGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGACGGAGGAGAAATAA GTGGCGGTGGGGATCCGAGAGCAGCAGCAGCGTTAGCGGCAAGAGAGGGA CGGACGAGGAGAGAGGACCCTCATGGAGCAAAGGCGCTACAGCAACGGCG ATTGCAGAGTATTCCTGAGTATTTGCGTCGGCTTTATCAGATCTTGCCCA TCCATACAGGTCCTCCCATAGACCCCGATACCATCATAAGGGGTTTGAGA GAGACACCGTTGCCACCTCGTCCACCGGGACCAGCGCATGGTTCCTCTTC AGGGGCTCTAGGAGAGAGGGAGAGGGGAGGGAGGGGAGGAAGAGCGGGGG GGAGGAAGAGGGGGAGGTACGGGGGTGGGGGGGATTCGGATAGTGGGGGA AGTGATGATGACATGATGAGGACAGGGACTCGAGATGTGTTTCGACAGCG ACAGCAGGAGAAATTGATGAACGAGGCGTTACAGGGCTAGGAGGGCGGGA GGGAGGGAGGGAGGGAGAGGCGGGAGGGAGAGAGGGAGGGATATCGAGGG GCGAATGGAGTCAATCGGAGAGCTCCAAAGGACGATAGACGTAAACAAAG AGTGAAAGAAGCGTATTAAGACGAGACCAAAAGACTTTTCATCAAAGTTC TAGGTCAGGGATTTCACTCCATTCCTCTATGCTCCGACTCTCGACAGGTG TAAACAGACACGAGTCAGAGAAATGATGCACAATAGAAAAACAAGGAAGG CAAACAATCGTTTTTTTC
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Coding sequence (CDS) from alignment at scaffold_29:118764..121781-

>mRNA_8896 ID=mRNA_8896|Name=jgi.p|Nanoce1779_2|633210|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_29:118764..121781- (Nannochloropsis oceanica)
ATGGCTGCTGCCCTCGCCCTCAACGCGCCCCTGCTGGGTGTCGACTCCGA
TTCGGAAGAAGAGGATGAGGAGATTGTGCCCATGTCCGCAGAGATTGCCC
TGTCGCGTGGCAGCACGCTTCTTCCACCCGGCAGCATCACCCCCCTAGGC
AGCAGCAGCAACGCGGTGGCAGCCAGCAGCAGCACTGCCAGCGCGGCTGT
AAAGCGCCGGCAAAGCCTAGGTGGAGCCGCATTATCTACAGCATTTACTG
AGACACAGCTGTTGTCGGCCTCGGATCGCTTTCGAGATGCCTGGGCCAGA
GTCCAAGCTAACGAGTGGGACGTGCGGGCGTGGACTGCCATCCTCAGCGA
AGCGCAGACACAACGCTCCGGCCGTGCCATCGCCTTGCGTGATGTTTACA
AGCTTGCGACGCGTCAATTTCCTACCATGGCGACGCTGTGGAAGGACTGG
TTGGAGCATGAAATGAGACAAGGGAATTTCGCAGAAGTAGACAATATTTT
TCGTCAATGCCTCCTGGAAGTCCCCTCGGTCGACCTCTACCTCCTCTATG
TGGCGCGTGTCCGCAAAACTAATCCTGCATCTCTAGGGGATGGAGCGTCG
CCTGATGTGGTGGCGGAGCAGCGGGAGCGAGTGACGGCTGCATTTGAGTT
GGCCGTGAGACAAGTGGGAGTGCTGGTGGACGCAGCGCCGTTGTGGTGGG
ATTACATTCGGTATGTTGAGGCTTGGAGGGACGAGGGGGGAAGGGAAGAT
GGGGGCAGTTATGGTGCGGTGGCGGAGGCGGGGTCGAAGATAGCGACGTT
AAGGAAAGTATACCACCGAGCTGTGCTGGTGCCGTTGGATGGGCTGGACG
AGTTGTGGCGTGCCTATGAAGCGTGGGAGAAGGGATTGAACGAGCACACA
GCGAGGCAGACATTACCGCAATTGCTGCCTGGGTATCAGCAGGCGAAGAC
CGTGGCGAGGGAGAGGAGGACGTTGCTTGACTTGCCCAAAGTGAGTAAAT
GGGCCGTTCCCCCTTCAGAGGCCGCGGAGGAGAAGGAGCAATTGCATCTT
TTCCGGCGAAAGATCGATTTTGAGAAGGGAAACCCCGAGAATGTGGATCC
GGTAGCACTGAAAGATAGGGTGCGATTGGCGTATAGGCAGGGTTTTGCTT
ATTTTTATCATTTCCCGGAGGTATGGTTTGAGTTTGCCTTGTACGAGCAA
GAGAGCGATGATGTCGCTGCTGCTGCTTCTCTCTTCGCCCGTGCCACGCG
GGCGGTGCCGGACTGTTTACTGCTGCACTTAGCATGGGCAGAATTAGAGG
AGGGGAGGGGGAGGGCTGAAAAGGGCGTGGAGGTGTTGAAGGGCTTCTTG
ACCCGAGAACCAAGCACACTGGGGTACATTGCATACCAACATTTCGTGAG
GAGGACGCTGGGGAAGGAAGCTGCAAGGAAGGTGTTCACAAGCACGAAGG
ACTTGAGAAGGAAAGGTGTCTTGGGGTATCAGTGGTATTTGGCACACGCG
CGGTTGGAGCAGCACGTGAATCAAGAGGAAGAGGTGGCGCGGAAGGTCCT
CGATCATGGTCTCTCCCAGCATTCCTCGTTTTTATTGGAGCCTGACTACG
TCATAGCCACGATGGATCTACTCATCTCCCTCCACGATGAACAAAACGTC
CGTGGCCTGGCAGACCGGGCTCTCGCCGTGCTCGACGCCGCGCCCGCAGC
GGCTGTTGCTGCACCTGGAGGAGAGCGGGAAGAGGTGGCATCGGCCGCAG
CAGCGATGGCAGCAGCAGAGAAGGCAAGACCGATTTGGTTGAAGCTGCTG
GAGTTTGAGATGTGCTTTGCCAGTGATCGCGACCCTTCGAGGGTGGAAAA
GGTCCAGAAGAGAATAGCAGAAGCGTACCCACGACAAGCGGAGCCACATC
CTTTCCTGCGGCTGTGGAGGAGGGTGAACATGTTGAAGGCAGCACCTGCA
TCAGAGGGGTCGGATGACCTATTAAGGCAGAGATGGGACGAGCCCCGGGT
CAGTTACGGGCTAGCGGAGGAGGGAGGGAGGGAGGGAGGGATAAGTGGGG
GGAGAGGTGGTGGAAGGGGGGCAGGGAAGAGGAATGGAGGGAAGACAGGA
GGGGCGTCGGCGGCGGCACTGGCGGCAGCATCAGCAGCGGCAGTGGCGGC
GGAGGGAGTAGGGACGTTGTCGGCAGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAGGGAGACGGAGGAGAAATAAGTGGCGGTGGGGATCCGAGAGCAGCA
GCAGCGTTAGCGGCAAGAGAGGGACGGACGAGGAGAGAGGACCCTCATGG
AGCAAAGGCGCTACAGCAACGGCGATTGCAGAGTATTCCTGAGTATTTGC
GTCGGCTTTATCAGATCTTGCCCATCCATACAGGTCCTCCCATAGACCCC
GATACCATCATAAGGGGTTTGAGAGAGACACCGTTGCCACCTCGTCCACC
GGGACCAGCGCATGGTTCCTCTTCAGGGGCTCTAGGAGAGAGGGAGAGGG
GAGGGAGGGGAGGAAGAGCGGGGGGGAGGAAGAGGGGGAGGTACGGGGGT
GGGGGGGATTCGGATAGTGGGGGAAGTGATGATGACATGATGAGGACAGG
GACTCGAGATGTGTTTCGACAGCGACAGCAGGAGAAATTGATGAACGAGG
CGTTACAGGGCTAG
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Synonyms
Publications