jgi.p|Nanoce1779_2|604407, mRNA_8895 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604407
Unique NamemRNA_8895
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length807
Alignment locationscaffold_29:117638..118478 +

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Properties
Property NameValue
TranscriptId604493
TrackFilteredModels2
ProteinId604407
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:117638..118478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604407gene_8895Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604407mRNA_8895-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8895CDS_8895Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8895 ID=mRNA_8895|Name=jgi.p|Nanoce1779_2|604407|organism=Nannochloropsis oceanica|type=mRNA|length=807bp
GGAGGGAGGAAGGGATGTGCAGATAATATTGGATTTGTTCAGTCGACGGG
CATATGCCTTGCTAGAGCGGCTGGCCTTGAAACTGCAGGGTTTGACCGAG
GGCGAGGGAGGGAAGGAGGGAGGGGTCATGAGTCAGGGGGCGGCGTGGAA
GAGTGTGCTGGTGGATGTTATGTTTGTTTCGAAGGCACATTCACTTTATA
CTATCTTGCGTCATTTTGCCGCGGGCCTGCAAGGACTGAAGGAGGGGGGG
GGGGCGTTTGTGGCAGTGATCGAACGCTTGTTCTTTTTGTTTGCATATTA
TCACCTGAGCCGAGAGACGGGCGATTTTCTGGAGCTTGGCCTGTTGTCTC
CTGAGGAAGCAGGGAGGGCGAGGGAGGAGCTGGATGTCTTGCTGCAGGCA
GTGAGGCCTGATGCGGTGGGGTTGTGCGATGGCTGGGACTGGTCGGACTT
TGAGTTGAAGAGCACGCTGGGGAGGTGGGACGGGAAGTACGAATTGGCTT
TGCTAGAGTCGGCGAAGAGGGAGCCATTGAATCATCAGGATGTGGTGGGG
GGTTGGGACCGAACATGGCAGCCGCAGTGGAAGGTGGAGGAGCAGGGGCA
GGCGGGACGGGCGAAGTTGTAGAAGGGGGATTGGAGGAAAGAAGAAAGAG
GGGAGTTGTGGAGGGAGGGGTGGAGGGGGTGAGAGAGTTGTCTGGGTCAG
GAGATTTTCGCACACAACTATGTGGCTATAGCGCTGGATATGTGAAGAGA
TGCAGTAGGAGTAGTGAGAGCTGTTGTAGCCGATGACGAAATGAAGAGGA
GTAAGGG
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protein sequence of jgi.p|Nanoce1779_2|604407

>mRNA_8895-protein ID=mRNA_8895-protein|Name=jgi.p|Nanoce1779_2|604407|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSQGAAWKSVLVDVMFVSKAHSLYTILRHFAAGLQGLKEGGGAFVAVIER
LFFLFAYYHLSRETGDFLELGLLSPEEAGRAREELDVLLQAVRPDAVGLC
DGWDWSDFELKSTLGRWDGKYELALLESAKREPLNHQDVVGGWDRTWQPQ
WKVEEQGQAGRAKL*
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mRNA from alignment at scaffold_29:117638..118478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8895 ID=mRNA_8895|Name=jgi.p|Nanoce1779_2|604407|organism=Nannochloropsis oceanica|type=mRNA|length=841bp|location=Sequence derived from alignment at scaffold_29:117638..118478+ (Nannochloropsis oceanica)
GGAGGGAGGAAGGGATGTGCAGATAATATTGGATTTGTTCAGTCGACGGG
CATATGCCTTGCTAGAGCGGCTGGCCTTGAAACTGCAGGGTTTGACCGAG
GGCGAGGGAGGGAAGGAGGGAGGGGTCATGAGTCAGGGGGCGGCGTGGAA
GAGTGTGCTGGTGGATGTTATGTTTGTTTCGAAGGCACATTCACTTTATA
CTATCTTGCGTCATTTTGCCGCGGGCCTGCAAGGACTGAAGGAGGGGTGG
GATGTCTCAGGAGTGGGGGGGGGAAGGGAGGGGGGGGGCGTTTGTGGCAG
TGATCGAACGCTTGTTCTTTTTGTTTGCATATTATCACCTGAGCCGAGAG
ACGGGCGATTTTCTGGAGCTTGGCCTGTTGTCTCCTGAGGAAGCAGGGAG
GGCGAGGGAGGAGCTGGATGTCTTGCTGCAGGCAGTGAGGCCTGATGCGG
TGGGGTTGTGCGATGGCTGGGACTGGTCGGACTTTGAGTTGAAGAGCACG
CTGGGGAGGTGGGACGGGAAGTACGAATTGGCTTTGCTAGAGTCGGCGAA
GAGGGAGCCATTGAATCATCAGGATGTGGTGGGGGGTTGGGACCGAACAT
GGCAGCCGCAGTGGAAGGTGGAGGAGCAGGGGCAGGCGGGACGGGCGAAG
TTGTAGAAGGGGGATTGGAGGAAAGAAGAAAGAGGGGAGTTGTGGAGGGA
GGGGTGGAGGGGGTGAGAGAGTTGTCTGGGTCAGGAGATTTTCGCACACA
ACTATGTGGCTATAGCGCTGGATATGTGAAGAGATGCAGTAGGAGTAGTG
AGAGCTGTTGTAGCCGATGACGAAATGAAGAGGAGTAAGGG
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Coding sequence (CDS) from alignment at scaffold_29:117638..118478+

>mRNA_8895 ID=mRNA_8895|Name=jgi.p|Nanoce1779_2|604407|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_29:117638..118478+ (Nannochloropsis oceanica)
ATGAGTCAGGGGGCGGCGTGGAAGAGTGTGCTGGTGGATGTTATGTTTGT
TTCGAAGGCACATTCACTTTATACTATCTTGCGTCATTTTGCCGCGGGCC
TGCAAGGACTGAAGGAGGGGGGGGGGGCGTTTGTGGCAGTGATCGAACGC
TTGTTCTTTTTGTTTGCATATTATCACCTGAGCCGAGAGACGGGCGATTT
TCTGGAGCTTGGCCTGTTGTCTCCTGAGGAAGCAGGGAGGGCGAGGGAGG
AGCTGGATGTCTTGCTGCAGGCAGTGAGGCCTGATGCGGTGGGGTTGTGC
GATGGCTGGGACTGGTCGGACTTTGAGTTGAAGAGCACGCTGGGGAGGTG
GGACGGGAAGTACGAATTGGCTTTGCTAGAGTCGGCGAAGAGGGAGCCAT
TGAATCATCAGGATGTGGTGGGGGGTTGGGACCGAACATGGCAGCCGCAG
TGGAAGGTGGAGGAGCAGGGGCAGGCGGGACGGGCGAAGTTGTAGATGAG
TCAGGGGGCGGCGTGGAAGAGTGTGCTGGTGGATGTTATGTTTGTTTCGA
AGGCACATTCACTTTATACTATCTTGCGTCATTTTGCCGCGGGCCTGCAA
GGACTGAAGGAGGGGGGGGGGGCGTTTGTGGCAGTGATCGAACGCTTGTT
CTTTTTGTTTGCATATTATCACCTGAGCCGAGAGACGGGCGATTTTCTGG
AGCTTGGCCTGTTGTCTCCTGAGGAAGCAGGGAGGGCGAGGGAGGAGCTG
GATGTCTTGCTGCAGGCAGTGAGGCCTGATGCGGTGGGGTTGTGCGATGG
CTGGGACTGGTCGGACTTTGAGTTGAAGAGCACGCTGGGGAGGTGGGACG
GGAAGTACGAATTGGCTTTGCTAGAGTCGGCGAAGAGGGAGCCATTGAAT
CATCAGGATGTGGTGGGGGGTTGGGACCGAACATGGCAGCCGCAGTGGAA
GGTGGAGGAGCAGGGGCAGGCGGGACGGGCGAAGTTGTAG
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Synonyms
Publications