jgi.p|Nanoce1779_2|604400, mRNA_8893 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604400
Unique NamemRNA_8893
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1659
Alignment locationscaffold_29:111698..113412 -

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Properties
Property NameValue
TranscriptId604486
TrackFilteredModels2
ProteinId604400
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:111698..113412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604400gene_8893Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604400mRNA_8893-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8893CDS_8893Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8893 ID=mRNA_8893|Name=jgi.p|Nanoce1779_2|604400|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
TGTTGGATGTGGTGGAGAGGAAGGTGAGGGAGGATGGGGGGATAGAGTTG
GCTATGTATCGAGCGGACGGAATAGCTCCGGATAATGTAATTACTAATGA
TAATGAGGCGGGTAAAGAGGACGAGCAGAAAGAGAAGTGGGATGTAGCCA
AACGTCTCTTCCTCGCGTCATCCCCTGAAAAGCTTTTAGATATCCTGCGT
GACGACAGGAATGCAGGGAGACTAGATGCCACCCATTGGGCAACGGCACT
TGCGCGGATGTCGGAATTTGTTAAGCACCACTATCATCAGCATCACCGGC
GCGATCAGAGCAATAGTACCGAAAAGCGACGCGAAAGGAAGTATCGCCAA
GAAACAGCGCCGCGGATGGTACATGGGTCCAGAAGGCGTGCTCCGTGATG
TTGCCCATGCGCGCGAGCTGCTACAACAGTCGACTTTTCCAGCCTTGGCC
CTAATGGTCGAAGGTTTGAGTGATTATTATGACTTTGAAAAATACGGGAA
GCTAGAGGAAGAGGACGAGGATGAAAATGATGAAAAGGAGAGGGGAAGGG
ATGGTGTGAGTGATGCGCTCAATCTAGCCAACATGGCCGTCTCGAGGGTG
AAAGTACTGCAGCGTGGGGTGAAGGAGGAGGAGAAGGAAAAGGAGGAGGA
GCAGCAACAACAGCAGCATCAAGGCATGCAGAGGAATAGCATCCTCATGA
CTTCCTCCAGCCTCGTTACCCTCCTTCGCGCCCTCTCTAAGCTGGGCTAT
CGCTCCCCTTCGTCGCTGCCTGTCTCTTCCACAATCCTACAAGGCATGGC
CCGTCATGGCCAGTTGGACTCGGCCGCGCTCGCCTCTGTGGTAGACAGTC
TCGCTACCATTTATCTTCAGCGGCCATTTCACTCTCCTGCTCCTGCGTCT
TCCTTTTCCTCTTTCTGCCCCAGCTCTCTGCCTGATGACGTGTCCGCCTG
CTTGACAACCCTCCTTCGAAGCGGCGAAAGTCAGTTACACGATCTTCGTC
CCCGTGACCTCGTCTCCTTTGTCAGTGCCATGGCACTCTTCAAGGAAGCA
AGCCAACTCTGCCCTTCCTTCTCCTCCTCCTCTTCCTCAACGTTCTCTTC
CTCTTCCTCACCAGCAGCAGCAGTGGCAGCAGCAGACGAGGAACGATTGA
TTGCCGCCATTGTAGGTGCAGCGGGGAAGGACCATATATGCCAAACCCTC
CCCTTGGCGGACTTGGCTTTGCTAACTTACAAAGGACCGGCCGAAGGCGA
CGGAGAAGGAGGCATCATCAGCCAGCGTGGACGACGGAAGTCTTTACAGT
GGCCTCTTGTTGGGGAGGTTCGACGGCGGCTCCGCGCTTTATCACCCTCA
GCGTTGGTATCTTTCATGCAGCAAGACATGGCGCAGGAAGACATGGTGCC
AGCAGCAGTGGCAACGGCGTCAGTCTCAAAATGGAAGACAAAGACAAAAA
GCATGAGACGTCGACCACGGCCGACGCGTGCATTTTTGATAATGCTCACG
AATGAGCTTTATAAGCAGCGAACAGCGTTGACGGCACGAGAAAAAAGTAT
AGCATCAGTTCATCTTCGAGGCTGGGCCGATATCTACGATGCAGGCCCTC
GATTCTGGCAACGCTTTGAATAAAATAATATTGTAAAAAACTAGAGGATG
AGAAATGTC
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protein sequence of jgi.p|Nanoce1779_2|604400

>mRNA_8893-protein ID=mRNA_8893-protein|Name=jgi.p|Nanoce1779_2|604400|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MPPIGQRHLRGCRNLLSTTIISITGAIRAIVPKSDAKGSIAKKQRRGWYM
GPEGVLRDVAHARELLQQSTFPALALMVEGLSDYYDFEKYGKLEEEDEDE
NDEKERGRDGVSDALNLANMAVSRVKVLQRGVKEEEKEKEEEQQQQQHQG
MQRNSILMTSSSLVTLLRALSKLGYRSPSSLPVSSTILQGMARHGQLDSA
ALASVVDSLATIYLQRPFHSPAPASSFSSFCPSSLPDDVSACLTTLLRSG
ESQLHDLRPRDLVSFVSAMALFKEASQLCPSFSSSSSSTFSSSSSPAAAV
AAADEERLIAAIVGAAGKDHICQTLPLADLALLTYKGPAEGDGEGGIISQ
RGRRKSLQWPLVGEVRRRLRALSPSALVSFMQQDMAQEDMVPAAVATASV
SKWKTKTKSMRRRPRPTRAFLIMLTNELYKQRTALTAREKSIASVHLRGW
ADIYDAGPRFWQRFE*
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mRNA from alignment at scaffold_29:111698..113412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8893 ID=mRNA_8893|Name=jgi.p|Nanoce1779_2|604400|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at scaffold_29:111698..113412- (Nannochloropsis oceanica)
TGTTGGATGTGGTGGAGAGGAAGGTGAGGGAGGATGGGGGGATAGAGTTG
GCTATGTATCGAGCGGACGGAATAGCTCCGGATAATGTAATTACTAATGA
TAATGAGGCGGGTAAAGAGGACGAGCAGAAAGAGAAGTGGGATGTAGCCA
AACGTCTCTTCCTCGCGTCATCCCCTGAAAAGCTTTTAGATATCCTGCGT
GACGACAGGAATGCAGGGAGACTAGATGCCACCCATTGGGCAACGGCACT
TGCGCGGATGTCGGAATTTGTTAAGCACCACTATCATCAGCATCACCGGC
GCGATCAGAGCAATAGTACCGGTAAAAAAGATAGCAGCAACGACAGCAGC
TATGACACTAGTAGCACAGGCAAGAAGAAAAGCGACGCGAAAGGAAGTAT
CGCCAAGAAACAGCGCCGCGGATGGTACATGGGTCCAGAAGGCGTGCTCC
GTGATGTTGCCCATGCGCGCGAGCTGCTACAACAGTCGACTTTTCCAGCC
TTGGCCCTAATGGTCGAAGGTTTGAGTGATTATTATGACTTTGAAAAATA
CGGGAAGCTAGAGGAAGAGGACGAGGATGAAAATGATGAAAAGGAGAGGG
GAAGGGATGGTGTGAGTGATGCGCTCAATCTAGCCAACATGGCCGTCTCG
AGGGTGAAAGTACTGCAGCGTGGGGTGAAGGAGGAGGAGAAGGAAAAGGA
GGAGGAGCAGCAACAACAGCAGCATCAAGGCATGCAGAGGAATAGCATCC
TCATGACTTCCTCCAGCCTCGTTACCCTCCTTCGCGCCCTCTCTAAGCTG
GGCTATCGCTCCCCTTCGTCGCTGCCTGTCTCTTCCACAATCCTACAAGG
CATGGCCCGTCATGGCCAGTTGGACTCGGCCGCGCTCGCCTCTGTGGTAG
ACAGTCTCGCTACCATTTATCTTCAGCGGCCATTTCACTCTCCTGCTCCT
GCGTCTTCCTTTTCCTCTTTCTGCCCCAGCTCTCTGCCTGATGACGTGTC
CGCCTGCTTGACAACCCTCCTTCGAAGCGGCGAAAGTCAGTTACACGATC
TTCGTCCCCGTGACCTCGTCTCCTTTGTCAGTGCCATGGCACTCTTCAAG
GAAGCAAGCCAACTCTGCCCTTCCTTCTCCTCCTCCTCTTCCTCAACGTT
CTCTTCCTCTTCCTCACCAGCAGCAGCAGTGGCAGCAGCAGACGAGGAAC
GATTGATTGCCGCCATTGTAGGTGCAGCGGGGAAGGACCATATATGCCAA
ACCCTCCCCTTGGCGGACTTGGCTTTGCTAACTTACAAAGGACCGGCCGA
AGGCGACGGAGAAGGAGGCATCATCAGCCAGCGTGGACGACGGAAGTCTT
TACAGTGGCCTCTTGTTGGGGAGGTTCGACGGCGGCTCCGCGCTTTATCA
CCCTCAGCGTTGGTATCTTTCATGCAGCAAGACATGGCGCAGGAAGACAT
GGTGCCAGCAGCAGTGGCAACGGCGTCAGTCTCAAAATGGAAGACAAAGA
CAAAAAGCATGAGACGTCGACCACGGCCGACGCGTGCATTTTTGATAATG
CTCACGAATGAGCTTTATAAGCAGCGAACAGCGTTGACGGCACGAGAAAA
AAGTATAGCATCAGTTCATCTTCGAGGCTGGGCCGATATCTACGATGCAG
GCCCTCGATTCTGGCAACGCTTTGAATAAAATAATATTGTAAAAAACTAG
AGGATGAGAAATGTC
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Coding sequence (CDS) from alignment at scaffold_29:111698..113412-

>mRNA_8893 ID=mRNA_8893|Name=jgi.p|Nanoce1779_2|604400|organism=Nannochloropsis oceanica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_29:111698..113412- (Nannochloropsis oceanica)
AAAAGCGACGCGAAAGGAAGTATCGCCAAGAAACAGCGCCGCGGATGGTA
CATGGGTCCAGAAGGCGTGCTCCGTGATGTTGCCCATGCGCGCGAGCTGC
TACAACAGTCGACTTTTCCAGCCTTGGCCCTAATGGTCGAAGGTTTGAGT
GATTATTATGACTTTGAAAAATACGGGAAGCTAGAGGAAGAGGACGAGGA
TGAAAATGATGAAAAGGAGAGGGGAAGGGATGGTGTGAGTGATGCGCTCA
ATCTAGCCAACATGGCCGTCTCGAGGGTGAAAGTACTGCAGCGTGGGGTG
AAGGAGGAGGAGAAGGAAAAGGAGGAGGAGCAGCAACAACAGCAGCATCA
AGGCATGCAGAGGAATAGCATCCTCATGACTTCCTCCAGCCTCGTTACCC
TCCTTCGCGCCCTCTCTAAGCTGGGCTATCGCTCCCCTTCGTCGCTGCCT
GTCTCTTCCACAATCCTACAAGGCATGGCCCGTCATGGCCAGTTGGACTC
GGCCGCGCTCGCCTCTGTGGTAGACAGTCTCGCTACCATTTATCTTCAGC
GGCCATTTCACTCTCCTGCTCCTGCGTCTTCCTTTTCCTCTTTCTGCCCC
AGCTCTCTGCCTGATGACGTGTCCGCCTGCTTGACAACCCTCCTTCGAAG
CGGCGAAAGTCAGTTACACGATCTTCGTCCCCGTGACCTCGTCTCCTTTG
TCAGTGCCATGGCACTCTTCAAGGAAGCAAGCCAACTCTGCCCTTCCTTC
TCCTCCTCCTCTTCCTCAACGTTCTCTTCCTCTTCCTCACCAGCAGCAGC
AGTGGCAGCAGCAGACGAGGAACGATTGATTGCCGCCATTGTAGGTGCAG
CGGGGAAGGACCATATATGCCAAACCCTCCCCTTGGCGGACTTGGCTTTG
CTAACTTACAAAGGACCGGCCGAAGGCGACGGAGAAGGAGGCATCATCAG
CCAGCGTGGACGACGGAAGTCTTTACAGTGGCCTCTTGTTGGGGAGGTTC
GACGGCGGCTCCGCGCTTTATCACCCTCAGCGTTGGTATCTTTCATGCAG
CAAGACATGGCGCAGGAAGACATGGTGCCAGCAGCAGTGGCAACGGCGTC
AGTCTCAAAATGGAAGACAAAGACAAAAAGCATGAGACGTCGACCACGGC
CGACGCGTGCATTTTTGATAATGCTCACGAATGAGCTTTATAAGCAGCGA
ACAGCGTTGACGGCACGAGAAAAAAGTATAGCATCAGTTCATCTTCGAGG
CTGGGCCGATATCTACGATGCAGGCCCTCGATTCTGGCAACGCTTTGAAT
AAATGCCACCCATTGGGCAACGGCACTTGCGCGGATGTCGGAATTTGTTA
AGCACCACTATCATCAGCATCACCGGCGCGATCAGAGCAATAGTACCGAA
AAGCGACGCGAAAGGAAGTATCGCCAAGAAACAGCGCCGCGGATGGTACA
TGGGTCCAGAAGGCGTGCTCCGTGATGTTGCCCATGCGCGCGAGCTGCTA
CAACAGTCGACTTTTCCAGCCTTGGCCCTAATGGTCGAAGGTTTGAGTGA
TTATTATGACTTTGAAAAATACGGGAAGCTAGAGGAAGAGGACGAGGATG
AAAATGATGAAAAGGAGAGGGGAAGGGATGGTGTGAGTGATGCGCTCAAT
CTAGCCAACATGGCCGTCTCGAGGGTGAAAGTACTGCAGCGTGGGGTGAA
GGAGGAGGAGAAGGAAAAGGAGGAGGAGCAGCAACAACAGCAGCATCAAG
GCATGCAGAGGAATAGCATCCTCATGACTTCCTCCAGCCTCGTTACCCTC
CTTCGCGCCCTCTCTAAGCTGGGCTATCGCTCCCCTTCGTCGCTGCCTGT
CTCTTCCACAATCCTACAAGGCATGGCCCGTCATGGCCAGTTGGACTCGG
CCGCGCTCGCCTCTGTGGTAGACAGTCTCGCTACCATTTATCTTCAGCGG
CCATTTCACTCTCCTGCTCCTGCGTCTTCCTTTTCCTCTTTCTGCCCCAG
CTCTCTGCCTGATGACGTGTCCGCCTGCTTGACAACCCTCCTTCGAAGCG
GCGAAAGTCAGTTACACGATCTTCGTCCCCGTGACCTCGTCTCCTTTGTC
AGTGCCATGGCACTCTTCAAGGAAGCAAGCCAACTCTGCCCTTCCTTCTC
CTCCTCCTCTTCCTCAACGTTCTCTTCCTCTTCCTCACCAGCAGCAGCAG
TGGCAGCAGCAGACGAGGAACGATTGATTGCCGCCATTGTAGGTGCAGCG
GGGAAGGACCATATATGCCAAACCCTCCCCTTGGCGGACTTGGCTTTGCT
AACTTACAAAGGACCGGCCGAAGGCGACGGAGAAGGAGGCATCATCAGCC
AGCGTGGACGACGGAAGTCTTTACAGTGGCCTCTTGTTGGGGAGGTTCGA
CGGCGGCTCCGCGCTTTATCACCCTCAGCGTTGGTATCTTTCATGCAGCA
AGACATGGCGCAGGAAGACATGGTGCCAGCAGCAGTGGCAACGGCGTCAG
TCTCAAAATGGAAGACAAAGACAAAAAGCATGAGACGTCGACCACGGCCG
ACGCGTGCATTTTTGATAATGCTCACGAATGAGCTTTATAAGCAGCGAAC
AGCGTTGACGGCACGAGAAAAAAGTATAGCATCAGTTCATCTTCGAGGCT
GGGCCGATATCTACGATGCAGGCCCTCGATTCTGGCAACGCTTTGAATAA
ATGCCACCCATTGGGCAACGGCACTTGCGCGGATGTCGGAATTTGTTAAG
CACCACTATCATCAGCATCACCGGCGCGATCAGAGCAATAGTACCG
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Synonyms
Publications