jgi.p|Nanoce1779_2|604388, mRNA_8892 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604388
Unique NamemRNA_8892
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length838
Alignment locationscaffold_29:107153..107990 -

Link to JBrowse

Properties
Property NameValue
TranscriptId604474
TrackFilteredModels2
ProteinId604388
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:107153..107990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604388gene_8892Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604388mRNA_8892-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8892CDS_8892Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8892 ID=mRNA_8892|Name=jgi.p|Nanoce1779_2|604388|organism=Nannochloropsis oceanica|type=mRNA|length=838bp
CGTGCAGTGGAGGAACAGCGTCTGCTGGACGAGAAATCGTCGAACCCTTT
AAGGAATTACCTGGGGCTGACCGATGTGGAACAAAAGCGAATTCGGAAGC
GGGACGTATTAATCGATAGAAACCTCTACAGTGACCTCAAACGGCATGGA
TTTGACTATTTAGTCCTACCTATTATGGAACTGGGGGGGTTTCGGGCATT
TGCGCCCATGTTCGCCATTCGTGGGGATCAGCCGCCAAGGCAAGAGGACA
CGGGGGGGTTAGCGTTAGGTGCGGCCTTGGAGGCAAAATTAGGCACGTTG
TCTGATAAGGTCTCGGCGGATCAGGGAAAGGAGGGAAGGAGGGAAGGAGG
TGAGAAAGGAGAGGGGATGCCTGTTTTGCTGACGGCGGGTGTTCCTAGTC
ATATAAGGGATGATGAGGCGAGCTTGGATCCAGCAGGGTGGAAGAAGGGG
AAGTCCGTCGTCATTGCACCAGCTAAGCCCAAAAAAGATTGGGGGAAGGA
GTTTCTCCTCTCCAATCCCTCGAAGCTTTACAGCGCTCTTCTTCTCCTCG
ATCTCGCTGTGGGCTTCGGAAGGTCGACGATAGGAGCGCTCGATAGGGGC
TTTTTGACTCCCTCCCTCCTGAACTACGTGCAGCTTGCAGCTGAAGTTGG
AGTGCTGGCCAATATTCTGAGTGCGCCACTCACATTTTTGTTTGTGACCA
AAGCAGGAAAGCCATGGGAATATGCCTTGCCGTTGGCGGTGAAGGCTCTT
ATGGGGGGGCCTGTGGCGATGGTTGAATATAAACTGAAGGGGGAGTTGGG
TGGCGATGGTAGTGGGTAGAGGGGGAGGGTAGGGGTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|604388

>mRNA_8892-protein ID=mRNA_8892-protein|Name=jgi.p|Nanoce1779_2|604388|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MELGGFRAFAPMFAIRGDQPPRQEDTGGLALGAALEAKLGTLSDKVSADQ
GKEGRREGGEKGEGMPVLLTAGVPSHIRDDEASLDPAGWKKGKSVVIAPA
KPKKDWGKEFLLSNPSKLYSALLLLDLAVGFGRSTIGALDRGFLTPSLLN
YVQLAAEVGVLANILSAPLTFLFVTKAGKPWEYALPLAVKALMGGPVAMV
EYKLKGELGGDGSG*
back to top

mRNA from alignment at scaffold_29:107153..107990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8892 ID=mRNA_8892|Name=jgi.p|Nanoce1779_2|604388|organism=Nannochloropsis oceanica|type=mRNA|length=838bp|location=Sequence derived from alignment at scaffold_29:107153..107990- (Nannochloropsis oceanica)
CGTGCAGTGGAGGAACAGCGTCTGCTGGACGAGAAATCGTCGAACCCTTT
AAGGAATTACCTGGGGCTGACCGATGTGGAACAAAAGCGAATTCGGAAGC
GGGACGTATTAATCGATAGAAACCTCTACAGTGACCTCAAACGGCATGGA
TTTGACTATTTAGTCCTACCTATTATGGAACTGGGGGGGTTTCGGGCATT
TGCGCCCATGTTCGCCATTCGTGGGGATCAGCCGCCAAGGCAAGAGGACA
CGGGGGGGTTAGCGTTAGGTGCGGCCTTGGAGGCAAAATTAGGCACGTTG
TCTGATAAGGTCTCGGCGGATCAGGGAAAGGAGGGAAGGAGGGAAGGAGG
TGAGAAAGGAGAGGGGATGCCTGTTTTGCTGACGGCGGGTGTTCCTAGTC
ATATAAGGGATGATGAGGCGAGCTTGGATCCAGCAGGGTGGAAGAAGGGG
AAGTCCGTCGTCATTGCACCAGCTAAGCCCAAAAAAGATTGGGGGAAGGA
GTTTCTCCTCTCCAATCCCTCGAAGCTTTACAGCGCTCTTCTTCTCCTCG
ATCTCGCTGTGGGCTTCGGAAGGTCGACGATAGGAGCGCTCGATAGGGGC
TTTTTGACTCCCTCCCTCCTGAACTACGTGCAGCTTGCAGCTGAAGTTGG
AGTGCTGGCCAATATTCTGAGTGCGCCACTCACATTTTTGTTTGTGACCA
AAGCAGGAAAGCCATGGGAATATGCCTTGCCGTTGGCGGTGAAGGCTCTT
ATGGGGGGGCCTGTGGCGATGGTTGAATATAAACTGAAGGGGGAGTTGGG
TGGCGATGGTAGTGGGTAGAGGGGGAGGGTAGGGGTGG
back to top

Coding sequence (CDS) from alignment at scaffold_29:107153..107990-

>mRNA_8892 ID=mRNA_8892|Name=jgi.p|Nanoce1779_2|604388|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_29:107153..107990- (Nannochloropsis oceanica)
ATGGAACTGGGGGGGTTTCGGGCATTTGCGCCCATGTTCGCCATTCGTGG
GGATCAGCCGCCAAGGCAAGAGGACACGGGGGGGTTAGCGTTAGGTGCGG
CCTTGGAGGCAAAATTAGGCACGTTGTCTGATAAGGTCTCGGCGGATCAG
GGAAAGGAGGGAAGGAGGGAAGGAGGTGAGAAAGGAGAGGGGATGCCTGT
TTTGCTGACGGCGGGTGTTCCTAGTCATATAAGGGATGATGAGGCGAGCT
TGGATCCAGCAGGGTGGAAGAAGGGGAAGTCCGTCGTCATTGCACCAGCT
AAGCCCAAAAAAGATTGGGGGAAGGAGTTTCTCCTCTCCAATCCCTCGAA
GCTTTACAGCGCTCTTCTTCTCCTCGATCTCGCTGTGGGCTTCGGAAGGT
CGACGATAGGAGCGCTCGATAGGGGCTTTTTGACTCCCTCCCTCCTGAAC
TACGTGCAGCTTGCAGCTGAAGTTGGAGTGCTGGCCAATATTCTGAGTGC
GCCACTCACATTTTTGTTTGTGACCAAAGCAGGAAAGCCATGGGAATATG
CCTTGCCGTTGGCGGTGAAGGCTCTTATGGGGGGGCCTGTGGCGATGGTT
GAATATAAACTGAAGGGGGAGTTGGGTGGCGATGGTAGTGGGTAG
back to top
Synonyms
Publications