jgi.p|Nanoce1779_2|604381, mRNA_8891 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604381
Unique Name	mRNA_8891
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2324
Alignment location	scaffold_29:103125..105743 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604467
Track	FilteredModels2
ProteinId	604381

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:103125..105743 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604381	gene_8891	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604381	mRNA_8891-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8891	CDS_8891	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:103125..105743+
coding sequence from alignment at scaffold_29:103125..105743+

mRNA sequence

>mRNA_8891 ID=mRNA_8891|Name=jgi.p|Nanoce1779_2|604381|organism=Nannochloropsis oceanica|type=mRNA|length=2324bp
GTCAATTCTGCTTGTATGCACATCCGCCCCTGGCGTGGTGGTGTGAATCA
CCCTGAGCTGTTGGTGACGGTAGGTGCAAGTGGAAAGAAAAACAAAGGGG
GATGAGATTGATAAATGGGTTCCATCGAAACAGCGCTGTGATCTGAGGTC
TGTCTTAGGCAGATGGCATTCTAGCCTCAGGCAATATCATCGTTCTAATT
TCTAGGGATGCGAGGCCGCAGGATCGAAGCCGCTGCGTTGAGGGGTAAGT
ACTAAGTGCGGAGGGAACGTCGCGCAGAGAATGCGAAGGCGTCGGTCACC
AACGCAACATGCTCCCCGAGCTCGCTCTTCTCGCAAATGTCTCTCCTGCA
TATTTCAATTTCTTCCCGCTAGTGGGAGAGTGAGCGTGGCTATGTGTGTG
CTTGTGCCGGTCGAGGCAAGGGCGTTGCAGTAGCAGTCAGCGTGCCCCAG
AATGTTTAAATAGATCTGCATGTTGCACCAAGTTAAACGTGCCAATCGCC
CTGCCCGTTCAGCTTGCACCTCCAGAGGGACTGGGGATGCTGTCTGATGT
GATAATTTGCTTATGTGTGAGGAAATGGTTATGTAAGGTGTGTCGGGGCG
GAGGGAGGAGGCAAATGATGCTTCGCGATGAGAGAAGGTCACGGCGAGAA
TTCCTCATGATACGTCTGTCTATTTGTGAAAATATTTGTGGATTGAGCAA
TTGTACATCGTATATGTAGTGGTGGGTGAATTAATATCTTGTGGAGGCGA
GAAGATGTATCGGCAAAAGACAAGGCACTGGTCACGACGACGGTAACCAG
GTGTTATGCAACGACGTCATCGCGCAGGTTAGGAGCAGCGGCGGCTTTGA
GGTGGTAGACGACCCCTCCCCTCCCTCCCTCCCTCCCTACCACCGACGAG
ACGAGACCCGCTGCCGCTCAGCGCCTTGCACCCGCTGCACGCCAGCGATA
CTCCTTTGTACACTAGGCTTGGGCGCTGGATAAGATGATGGCCCTGTGCG
AGAGAGGAGTGGTGAATCGGTCGGACGTGCCTGCTGTAGTGAAACAGCAG
CACACGGTCGACAGCACGCGGTTGGCGACTTGCGAGACCAGATTTATTTG
TGTGTCTCCAAACTTAGCTGGAAGCCAGACTTTCTTCAACGTCTGTTTCA
AACATTCTGCTCTTACTCCTGCATGGCTCCTCATGCGATCACATGGATGA
AAAACGCATGCAGGCAGAGGGCGTGACGACTTTTTTCCCTCTCGCTCCTC
CCCCTGTTCATATTTATGGTCCTTCTCTTTCCGGCTAGTTGCCCCTCCAC
CTGGATGAGTAGACCATAAATGAATGAAACACATGCCATTATATCGTCCG
GCCAATGCGCACACTTCGTCGTCACCCATTGCACACACACACAGGATCTG
TCCCAAGAGTCGTAGCAGAGCCGCCGTCGCCAAGTCAAAAATCATAAAAA
CGAGTTTGACACGCATCTAGCCAGCAGGGCCCCCATAAAGAGCCCTCTTC
GTCGAGCCGCACTCCTCCACCTCTCCCTCTCCCACCCCAAACCACCGCAG
ACGCACCCACCCACCCACCCGCCATAACAATGGGTGACATCCCCCCCAAT
CAAACCTTGTACGTGCAAAACCTCCCGGACAAGCTTAAGAAAGAGGCGTT
GAAGAAACAACTCTACATGGCCTTTTCAGCCTACGGCCGCGTGATCGACG
TTGTGGCTTGTAAGGGTAATAATTTAAGAGGGCAAGCATGGGTTGTCTAT
GACAGTGTCGGTAGCGCTACCACTGCGTTGAGAAGTCTGCAGGGTTTTCA
GTTTTTTGGGAGGCCGCTGCGGATCTTCTTTGCCACCGGGAAGAGTGATG
CAGTGGCGTTAAGGCAGGGACAGTATGAGCCGAAGGCGAAGAGACAGAAG
AGGGAGAAGGCGGAGAGGGAGGGAGGGAAGGGGAAGGAGACGGAAGGACC
AAGAGGAGGAGGAGGAGAGAAGGTAAAGGGGAACCCAGTGGCGAGTGGGG
AGGTGAGCAGTATGCTGATGGCACAGGACTTGCCGGCGGAGATTAACGAT
GAGATGTTGGGTGTCCTGTTTGCACGCTTTGATGGCTTCCAAGAAATCCG
TCTAGCGGGGCAACGAGGCATTGCATTTATTGAGTTCAGGGATGAGCTCG
CAGCAAGCACGGCTCTTTCCGGTCTTAACGAATACAAGCTTTCCCCTACG
CATACGTTGAAACTGAGTTATGCGAAAAGGTGATGAGGCGACAGAGGGAA
AGAGGGGAGTGAGAGGTGCTGTAGGGGGTGGGAGGGCACGGAGAAAACCA
AAGAAAAATCCAGTGGGTATCTAA

protein sequence of jgi.p|Nanoce1779_2|604381

>mRNA_8891-protein ID=mRNA_8891-protein|Name=jgi.p|Nanoce1779_2|604381|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MGDIPPNQTLYVQNLPDKLKKEALKKQLYMAFSAYGRVIDVVACKGNNLR
GQAWVVYDSVGSATTALRSLQGFQFFGRPLRIFFATGKSDAVALRQGQYE
PKAKRQKREKAEREGGKGKETEGPRGGGGEKVKGNPVASGEVSSMLMAQD
LPAEINDEMLGVLFARFDGFQEIRLAGQRGIAFIEFRDELAASTALSGLN
EYKLSPTHTLKLSYAKR*

mRNA from alignment at scaffold_29:103125..105743+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8891 ID=mRNA_8891|Name=jgi.p|Nanoce1779_2|604381|organism=Nannochloropsis oceanica|type=mRNA|length=2619bp|location=Sequence derived from alignment at scaffold_29:103125..105743+ (Nannochloropsis oceanica)
GTCAATTCTGCTTGTATGCACATCCGCCCCTGGCGTGGTGGTGTGAATCA
CCCTGAGCTGTTGGTGACGGTAGGTGCAAGTGGAAAGAAAAACAAAGGGG
GATGAGATTGATAAATGGGTTCCATCGAAACAGCGCTGTGATCTGAGGTC
TGTCTTAGGCAGATGGCATTCTAGCCTCAGGCAATATCATCGTTCTAATT
TCTAGGGATGCGAGGCCGCAGGATCGAAGCCGCTGCGTTGAGGGGTAAGT
ACTAAGTGCGGAGGGAACGTCGCGCAGAGAATGCGAAGGCGTCGGTCACC
AACGCAACATGCTCCCCGAGCTCGCTCTTCTCGCAAATGTCTCTCCTGCA
TATTTCAATTTCTTCCCGCTAGTGGGAGAGTGAGCGTGGCTATGTGTGTG
CTTGTGCCGGTCGAGGCAAGGGCGTTGCAGTAGCAGTCAGCGTGCCCCAG
AATGTTTAAATAGATCTGCATGTTGCACCAAGTTAAACGTGCCAATCGCC
CTGCCCGTTCAGCTTGCACCTCCAGAGGGACTGGGGATGCTGTCTGATGT
GATAATTTGCTTATGTGTGAGGAAATGGTTATGTAAGGTGTGTCGGGGCG
GAGGGAGGAGGCAAATGATGCTTCGCGATGAGAGAAGGTCACGGCGAGAA
TTCCTCATGATACGTCTGTCTATTTGTGAAAATATTTGTGGATTGAGCAA
TTGTACATCGTATATGTAGTGGTGGGTGAATTAATATCTTGTGGAGGCGA
GAAGATGTATCGGCAAAAGACAAGGTACGCACAAGGGTCTTAAGTGAGGG
AGGGCGGGGAGGCTTGCACGCATCGTTGCTTTGTTCGATCATCATCATGA
CCCACTTGTCGCGTTTCTACTCTTATGCCACGCACACATCGTACAGGCAC
TGGTCACGACGACGGTAACCAGGTGTTATGCAACGACGTCATCGCGCAGG
TTAGGAGCAGCGGCGGCTTTGAGGTGGTAGACGACCCCTCCCCTCCCTCC
CTCCCTCCCTACCACCGACGAGACGAGACCCGCTGCCGCTCAGCGCCTTG
CACCCGCTGCACGCCAGCGATACTCCTTTGTACACTAGGCTTGGGCGCTG
GATAAGATGATGGCCCTGTGCGAGAGAGGAGTGGTGAATCGGTCGGACGT
GCCTGCTGTAGTGAAACAGCAGCACACGGTCGACAGCACGCGGTTGGCGA
CTTGCGAGACCAGATTTATTTGTGTGTCTCCAAACTTAGCTGGAAGCCAG
ACTTTCTTCAACGTCTGTTTCAAACATTCTGCTCTTACTCCTGCATGGCT
CCTCATGCGATCACATGGATGAAAAACGCATGCAGGCAGAGGGCGTGACG
ACTTTTTTCCCTCTCGCTCCTCCCCCTGTTCATATTTATGGTCCTTCTCT
TTCCGGCTAGTTGCCCCTCCACCTGGATGAGTAGACCATAAATGAATGAA
ACACATGCCATTATATCGTCCGGCCAATGCGCACACTTCGTCGTCACCCA
TTGCACACACACACAGGATCTGTCCCAAGAGTCGTAGCAGAGCCGCCGTC
GCCAAGTCAAAAATCATAAAAACGAGTTTGACACGCATCTAGCCAGCAGG
GCCCCCATAAAGAGCCCTCTTCGTCGAGCCGCACTCCTCCACCTCTCCCT
CTCCCACCCCAAACCACCGCAGACGCACCCACCCACCCACCCGCCATAAC
AATGGGTGACATCCCCCCCAATCAAACCTTGTACGTGCAAAACCTCCCGG
ACAAGCTTAAGAAAGAGGCGTTGAAGAAACAACTCTACATGGCCTTTTCA
GCCTACGGCCGCGTGATCGACGTTGTGGCTTGTAAGGGTAATAATTTAAG
AGGGCAAGCATGGGTTGTCTATGACAGTGTCGGTAGCGCTACCACTGCGT
TGAGAAGTCTGCAGGGTTTTCAGTTTTTTGGGAGGCCGCTGCGGATCTTC
TTTGCCACCGGGAAGAGTGATGCAGTGGCGTTAAGGCAGGGACAGTATGA
GCCGAAGGCGAAGAGACAGAAGAGGGAGAAGGCGGAGAGGGAGGGAGGGA
AGGGGAAGGAGACGGAAGGACCAAGAGGAGGAGGAGGAGAGAAGGTAAAG
GGGAACCCAGTGGCGAGTGGGGAGGTGAGCAGTATGCTGATGGCACAGGA
CTTGCCGGCGGAGATTAACGATGAGGTGAGAGTGGAGAGGATAGGGAGGA
GGGAGGAGGACGAAGAGGAGGGGCTATAGGGCCTTTACACCACTTCTACT
TTTGATCGTGCGAATCTCAAGATCTAATTAAATCTGTGCCTCGCATTTGT
TCCTCACCTCTTTCTCTCTCCTCTCCCTCCCGGTCCTCTCTCCTACAGAT
GTTGGGTGTCCTGTTTGCACGCTTTGATGGCTTCCAAGAAATCCGTCTAG
CGGGGCAACGAGGCATTGCATTTATTGAGTTCAGGGATGAGCTCGCAGCA
AGCACGGCTCTTTCCGGTCTTAACGAATACAAGCTTTCCCCTACGCATAC
GTTGAAACTGAGTTATGCGAAAAGGTGATGAGGCGACAGAGGGAAAGAGG
GGAGTGAGAGGTGCTGTAGGGGGTGGGAGGGCACGGAGAAAACCAAAGAA
AAATCCAGTGGGTATCTAA

Coding sequence (CDS) from alignment at scaffold_29:103125..105743+

>mRNA_8891 ID=mRNA_8891|Name=jgi.p|Nanoce1779_2|604381|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_29:103125..105743+ (Nannochloropsis oceanica)
ATGGGTGACATCCCCCCCAATCAAACCTTGTACGTGCAAAACCTCCCGGA
CAAGCTTAAGAAAGAGGCGTTGAAGAAACAACTCTACATGGCCTTTTCAG
CCTACGGCCGCGTGATCGACGTTGTGGCTTGTAAGGGTAATAATTTAAGA
GGGCAAGCATGGGTTGTCTATGACAGTGTCGGTAGCGCTACCACTGCGTT
GAGAAGTCTGCAGGGTTTTCAGTTTTTTGGGAGGCCGCTGCGGATCTTCT
TTGCCACCGGGAAGAGTGATGCAGTGGCGTTAAGGCAGGGACAGTATGAG
CCGAAGGCGAAGAGACAGAAGAGGGAGAAGGCGGAGAGGGAGGGAGGGAA
GGGGAAGGAGACGGAAGGACCAAGAGGAGGAGGAGGAGAGAAGGTAAAGG
GGAACCCAGTGGCGAGTGGGGAGGTGAGCAGTATGCTGATGGCACAGGAC
TTGCCGGCGGAGATTAACGATGAGATGTTGGGTGTCCTGTTTGCACGCTT
TGATGGCTTCCAAGAAATCCGTCTAGCGGGGCAACGAGGCATTGCATTTA
TTGAGTTCAGGGATGAGCTCGCAGCAAGCACGGCTCTTTCCGGTCTTAAC
GAATACAAGCTTTCCCCTACGCATACGTTGAAACTGAGTTATGCGAAAAG
GTGAATGGGTGACATCCCCCCCAATCAAACCTTGTACGTGCAAAACCTCC
CGGACAAGCTTAAGAAAGAGGCGTTGAAGAAACAACTCTACATGGCCTTT
TCAGCCTACGGCCGCGTGATCGACGTTGTGGCTTGTAAGGGTAATAATTT
AAGAGGGCAAGCATGGGTTGTCTATGACAGTGTCGGTAGCGCTACCACTG
CGTTGAGAAGTCTGCAGGGTTTTCAGTTTTTTGGGAGGCCGCTGCGGATC
TTCTTTGCCACCGGGAAGAGTGATGCAGTGGCGTTAAGGCAGGGACAGTA
TGAGCCGAAGGCGAAGAGACAGAAGAGGGAGAAGGCGGAGAGGGAGGGAG
GGAAGGGGAAGGAGACGGAAGGACCAAGAGGAGGAGGAGGAGAGAAGGTA
AAGGGGAACCCAGTGGCGAGTGGGGAGGTGAGCAGTATGCTGATGGCACA
GGACTTGCCGGCGGAGATTAACGATGAGATGTTGGGTGTCCTGTTTGCAC
GCTTTGATGGCTTCCAAGAAATCCGTCTAGCGGGGCAACGAGGCATTGCA
TTTATTGAGTTCAGGGATGAGCTCGCAGCAAGCACGGCTCTTTCCGGTCT
TAACGAATACAAGCTTTCCCCTACGCATACGTTGAAACTGAGTTATGCGA
AAAGGTGA

Synonyms

Publications