jgi.p|Nanoce1779_2|224209, mRNA_8890 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|224209
Unique NamemRNA_8890
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length775
Alignment locationscaffold_29:104088..104862 -

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Properties
Property NameValue
TranscriptId224295
TrackFilteredModels2
ProteinId224209
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:104088..104862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|224209gene_8890Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|224209mRNA_8890-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8890CDS_8890Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8890 ID=mRNA_8890|Name=jgi.p|Nanoce1779_2|224209|organism=Nannochloropsis oceanica|type=mRNA|length=775bp
GCACGTACAAGGTTTGATTGGGGGGGATGTCACCCATTGTTATGGCGGGT
GGGTGGGTGGGTGCGTCTGCGGTGGTTTGGGGTGGGAGAGGGAGAGGTGG
AGGAGTGCGGCTCGACGAAGAGGGCTCTTTATGGGGGCCCTGCTGGCTAG
ATGCGTGTCAAACTCGTTTTTATGATTTTTGACTTGGCGACGGCGGCTCT
GCTACGACTCTTGGGACAGATCCTGTGTGTGTGTGCAATGGGTGACGACG
AAGTGTGCGCATTGGCCGGACGATATAATGGCATGTGTTTCATTCATTTA
TGGTCTACTCATCCAGGTGGAGGGGCAACTAGCCGGAAAGAGAAGGACCA
TAAATATGAACAGGGGGAGGAGCGAGAGGGAAAAAAGTCGTCACGCCCTC
TGCCTGCATGCGTTTTTCATCCATGTGATCGCATGAGGAGCCATGCAGGA
GTAAGAGCAGAATGTTTGAAACAGACGTTGAAGAAAGTCTGGCTTCCAGC
TAAGTTTGGAGACACACAAATAAATCTGGTCTCGCAAGTCGCCAACCGCG
TGCTGTCGACCGTGTGCTGCTGTTTCACTACAGCAGGCACGTCCGACCGA
TTCACCACTCCTCTCTCGCACAGGGCCATCATCTTATCCAGCGCCCAAGC
CTAGTGTACAAAGGAGTATCGCTGGCGTGCAGCGGGTGCAAGGCGCTGAG
CGGCAGCGGGTCTCGTCTCGTCGGTGGTAGGGAGGGAGGGAGGGAGGGGA
GGGGTCGTCTACCACCTCAAAGCCG
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protein sequence of jgi.p|Nanoce1779_2|224209

>mRNA_8890-protein ID=mRNA_8890-protein|Name=jgi.p|Nanoce1779_2|224209|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MRVKLVFMIFDLATAALLRLLGQILCVCAMGDDEVCALAGRYNGMCFIHL
WSTHPGGGATSRKEKDHKYEQGEEREGKKSSRPLPACVFHPCDRMRSHAG
VRAECLKQTLKKVWLPAKFGDTQINLVSQVANRVLSTVCCCFTTAGTSDR
FTTPLSHRAIILSSAQA*
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mRNA from alignment at scaffold_29:104088..104862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8890 ID=mRNA_8890|Name=jgi.p|Nanoce1779_2|224209|organism=Nannochloropsis oceanica|type=mRNA|length=775bp|location=Sequence derived from alignment at scaffold_29:104088..104862- (Nannochloropsis oceanica)
GCACGTACAAGGTTTGATTGGGGGGGATGTCACCCATTGTTATGGCGGGT
GGGTGGGTGGGTGCGTCTGCGGTGGTTTGGGGTGGGAGAGGGAGAGGTGG
AGGAGTGCGGCTCGACGAAGAGGGCTCTTTATGGGGGCCCTGCTGGCTAG
ATGCGTGTCAAACTCGTTTTTATGATTTTTGACTTGGCGACGGCGGCTCT
GCTACGACTCTTGGGACAGATCCTGTGTGTGTGTGCAATGGGTGACGACG
AAGTGTGCGCATTGGCCGGACGATATAATGGCATGTGTTTCATTCATTTA
TGGTCTACTCATCCAGGTGGAGGGGCAACTAGCCGGAAAGAGAAGGACCA
TAAATATGAACAGGGGGAGGAGCGAGAGGGAAAAAAGTCGTCACGCCCTC
TGCCTGCATGCGTTTTTCATCCATGTGATCGCATGAGGAGCCATGCAGGA
GTAAGAGCAGAATGTTTGAAACAGACGTTGAAGAAAGTCTGGCTTCCAGC
TAAGTTTGGAGACACACAAATAAATCTGGTCTCGCAAGTCGCCAACCGCG
TGCTGTCGACCGTGTGCTGCTGTTTCACTACAGCAGGCACGTCCGACCGA
TTCACCACTCCTCTCTCGCACAGGGCCATCATCTTATCCAGCGCCCAAGC
CTAGTGTACAAAGGAGTATCGCTGGCGTGCAGCGGGTGCAAGGCGCTGAG
CGGCAGCGGGTCTCGTCTCGTCGGTGGTAGGGAGGGAGGGAGGGAGGGGA
GGGGTCGTCTACCACCTCAAAGCCG
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Coding sequence (CDS) from alignment at scaffold_29:104088..104862-

>mRNA_8890 ID=mRNA_8890|Name=jgi.p|Nanoce1779_2|224209|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_29:104088..104862- (Nannochloropsis oceanica)
ATGCGTGTCAAACTCGTTTTTATGATTTTTGACTTGGCGACGGCGGCTCT
GCTACGACTCTTGGGACAGATCCTGTGTGTGTGTGCAATGGGTGACGACG
AAGTGTGCGCATTGGCCGGACGATATAATGGCATGTGTTTCATTCATTTA
TGGTCTACTCATCCAGGTGGAGGGGCAACTAGCCGGAAAGAGAAGGACCA
TAAATATGAACAGGGGGAGGAGCGAGAGGGAAAAAAGTCGTCACGCCCTC
TGCCTGCATGCGTTTTTCATCCATGTGATCGCATGAGGAGCCATGCAGGA
GTAAGAGCAGAATGTTTGAAACAGACGTTGAAGAAAGTCTGGCTTCCAGC
TAAGTTTGGAGACACACAAATAAATCTGGTCTCGCAAGTCGCCAACCGCG
TGCTGTCGACCGTGTGCTGCTGTTTCACTACAGCAGGCACGTCCGACCGA
TTCACCACTCCTCTCTCGCACAGGGCCATCATCTTATCCAGCGCCCAAGC
CTAG
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Synonyms
Publications