jgi.p|Nanoce1779_2|574529, mRNA_889 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574529
Unique Name	mRNA_889
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2183
Alignment location	scaffold_2:667507..669689 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574615
Track	FilteredModels2
ProteinId	574529

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:667507..669689 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574529	gene_889	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574529	mRNA_889-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_889	CDS_889	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:667507..669689-
coding sequence from alignment at scaffold_2:667507..669689-

mRNA sequence

>mRNA_889 ID=mRNA_889|Name=jgi.p|Nanoce1779_2|574529|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp
ACAAAAGTAACAGTCCGGGAAACGCGGCGCGACCAGAGGTGCTCGTTGTC
CATCATCTCGTCTAGACAACAACCCCCCCCCGGCACACGGCCCACACGAC
ATTCGTCCGCTCCCGTCATCTTCCGTCTTCGTCTTGAGTCAAAGAAACCA
TGACCACCAAACCCTTCATGCTGCACCTCTTTGACGACCGGGTGGCCCTG
GAGCGTACGGACTCGGGGGCGGCTCTGGTCATCTCGCGCAGCATCCCCGA
GGCGCCCTTGGAAGCCTACGTCGATGAGCGGGGCAAGGTCTTAAAAGAAG
TCTCAGGTGGCCAACTTATTCCTGTGGACGCCCTCTTTGGCATCTACCAT
CTACTCTCGGGGCCATATTTGGTGCTGGTGACAGATTCGGAGGTGGCAGT
GGGCTTGGGTGGGGGAGTGGACTTTCGCAAAGTAACAAAGGCGGCGATCA
TCCCCCTGATCAAGTCTGGCGTGCCTCTGTCGGACGAGAAGCAAGCGGAC
GAAGACCGGTACCTGGAGCTGTTGCACCTGGCCATATCCAGCCATCATTT
TTACTTTAGCTACACGTATGACGTGACGCACACCTTACAGCGGATAGCAT
GCATGACAGCCGAGGACAGGGCCAAAAGGCCACTGTGGCAACGGGCAGAC
GACCGCTTCTTTTGGAATCGCGATGTCGTGGGCGAGCTGGTTGCGGTAAA
GGCACACGACTGGATCGTACCCATGATGAATGCCTACGTGGACCTTCGGC
AGAATTGCAACGCTGGCATGCATCGTTTTCAGATGTTGTTTGTCTCGAGA
CGGTCGCGGTTTCGTCAGGGGTGCCGGTTCACCATGCGGGGGGCGGATGA
TGAGGGGCATGTGGCCAATTTTGTGGAGACGGAGCAGGCATTGTTGCACG
AAGATGGGCGACAGACAGCATTAGTCCAGGTTAGAGGGTCGATTCCGCTG
CAATGGCATTCACCGGTGTGCTTGAAGTACACGCCGCGAGTTTATTTTGG
GGATGCGGCCAAGGGACAGGCGGCCGCGAAGAAGCACGTGGAGGAGTTGG
TGGAGAACTATGGACCGGAGGGGGTCGTGTTTGTGAATTTGGTGAATATG
AAAAAGGATGAACAGGCGTTGGGGATTCGGTTTAAACAGGCGATTGATGA
GTTGACGGATAAGGCGTTGAGGTATGTTTGGTTTGATTTTCACCATGAGT
GCAAGAAGATGAAGTACGGGAATCTGGCAAAGCTGTTGAAGGAGATCGAG
GTAGAGTTTGGAAAGCATGCCTTCTTTTCACGAGCGGCGGATGGCACGAT
CACTCAGGTGCAGCAGGGGGTGGTGAGGACGAATTGTTTGGATAATCTGG
ATCGGACGAATGTAGTGCAAAGCATTATAGGCCGGCGTTCGCTGTTAATG
CAGTTGGGGGAGACCAAAGCCTTGGCACTGGACGGGGCGCATGTATTGGA
GTCTCCTTTCCCGTCGTTTGAGAAGGTGTTCAAGGACATGTGGGGGAATA
ACGCGGATGCTATTTCTGTCCTCTATTCTGGCACAGGGGCGCTCAAGACC
GATTTTACCCGTACAGGGAAGCGGACCATTCGTGGGGCCCTACAAGATGG
CGTAAACTCGGTCATGCGGTATTATAAGAACAATTTCGTCGACGCCACTC
GTCAGGATGCGTTGGATTTGATGCTGGGTCGTTTCCGTCCTGACCCTGCC
AACCCGTCCCCCTTCCTGTATCCGCCTGCGGAGCAAGAGGCATTCTCTTC
CTTTATGACCAAGGTCTTTGTCATTTTGGTAACAACTTTCTCGCTGTCTA
TGCTTATTAAGCCTCAGGAGAAGGCTTTGCCGCAGCTGTTCCTCCTTTCT
CTTCTCGTAACCTTTCTCATTCTTGCTCTCGTGGCACGGCACGTCTTGAC
CAAGGGGGGAAAGATTGGCCAGGGACTCGTTGCCAAGCCTCGGCTGGTGC
CGGAGCCGTATGTCTACACATTCTACTCCGCGACATGGTGATATTGAGAG
AAGGAAATGGGAAATGGACAGGGTGGGGGAATTGTTGTAGCACTAAAAGG
AAAAGAGGGGGTGGGGGTGGGGAGGTTGGCGAGTAGGGAGCTGGGGAGTT
TGCTTGCAGCTGCAGCTGTCGGAAGTGTAGGCACTCAGTAGTTATTTTGG
AACCGGCACAGGGTTGTTATTTTGATATCGGAA

protein sequence of jgi.p|Nanoce1779_2|574529

>mRNA_889-protein ID=mRNA_889-protein|Name=jgi.p|Nanoce1779_2|574529|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MTTKPFMLHLFDDRVALERTDSGAALVISRSIPEAPLEAYVDERGKVLKE
VSGGQLIPVDALFGIYHLLSGPYLVLVTDSEVAVGLGGGVDFRKVTKAAI
IPLIKSGVPLSDEKQADEDRYLELLHLAISSHHFYFSYTYDVTHTLQRIA
CMTAEDRAKRPLWQRADDRFFWNRDVVGELVAVKAHDWIVPMMNAYVDLR
QNCNAGMHRFQMLFVSRRSRFRQGCRFTMRGADDEGHVANFVETEQALLH
EDGRQTALVQVRGSIPLQWHSPVCLKYTPRVYFGDAAKGQAAAKKHVEEL
VENYGPEGVVFVNLVNMKKDEQALGIRFKQAIDELTDKALRYVWFDFHHE
CKKMKYGNLAKLLKEIEVEFGKHAFFSRAADGTITQVQQGVVRTNCLDNL
DRTNVVQSIIGRRSLLMQLGETKALALDGAHVLESPFPSFEKVFKDMWGN
NADAISVLYSGTGALKTDFTRTGKRTIRGALQDGVNSVMRYYKNNFVDAT
RQDALDLMLGRFRPDPANPSPFLYPPAEQEAFSSFMTKVFVILVTTFSLS
MLIKPQEKALPQLFLLSLLVTFLILALVARHVLTKGGKIGQGLVAKPRLV
PEPYVYTFYSATW*

mRNA from alignment at scaffold_2:667507..669689-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_889 ID=mRNA_889|Name=jgi.p|Nanoce1779_2|574529|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp|location=Sequence derived from alignment at scaffold_2:667507..669689- (Nannochloropsis oceanica)
ACAAAAGTAACAGTCCGGGAAACGCGGCGCGACCAGAGGTGCTCGTTGTC
CATCATCTCGTCTAGACAACAACCCCCCCCCGGCACACGGCCCACACGAC
ATTCGTCCGCTCCCGTCATCTTCCGTCTTCGTCTTGAGTCAAAGAAACCA
TGACCACCAAACCCTTCATGCTGCACCTCTTTGACGACCGGGTGGCCCTG
GAGCGTACGGACTCGGGGGCGGCTCTGGTCATCTCGCGCAGCATCCCCGA
GGCGCCCTTGGAAGCCTACGTCGATGAGCGGGGCAAGGTCTTAAAAGAAG
TCTCAGGTGGCCAACTTATTCCTGTGGACGCCCTCTTTGGCATCTACCAT
CTACTCTCGGGGCCATATTTGGTGCTGGTGACAGATTCGGAGGTGGCAGT
GGGCTTGGGTGGGGGAGTGGACTTTCGCAAAGTAACAAAGGCGGCGATCA
TCCCCCTGATCAAGTCTGGCGTGCCTCTGTCGGACGAGAAGCAAGCGGAC
GAAGACCGGTACCTGGAGCTGTTGCACCTGGCCATATCCAGCCATCATTT
TTACTTTAGCTACACGTATGACGTGACGCACACCTTACAGCGGATAGCAT
GCATGACAGCCGAGGACAGGGCCAAAAGGCCACTGTGGCAACGGGCAGAC
GACCGCTTCTTTTGGAATCGCGATGTCGTGGGCGAGCTGGTTGCGGTAAA
GGCACACGACTGGATCGTACCCATGATGAATGCCTACGTGGACCTTCGGC
AGAATTGCAACGCTGGCATGCATCGTTTTCAGATGTTGTTTGTCTCGAGA
CGGTCGCGGTTTCGTCAGGGGTGCCGGTTCACCATGCGGGGGGCGGATGA
TGAGGGGCATGTGGCCAATTTTGTGGAGACGGAGCAGGCATTGTTGCACG
AAGATGGGCGACAGACAGCATTAGTCCAGGTTAGAGGGTCGATTCCGCTG
CAATGGCATTCACCGGTGTGCTTGAAGTACACGCCGCGAGTTTATTTTGG
GGATGCGGCCAAGGGACAGGCGGCCGCGAAGAAGCACGTGGAGGAGTTGG
TGGAGAACTATGGACCGGAGGGGGTCGTGTTTGTGAATTTGGTGAATATG
AAAAAGGATGAACAGGCGTTGGGGATTCGGTTTAAACAGGCGATTGATGA
GTTGACGGATAAGGCGTTGAGGTATGTTTGGTTTGATTTTCACCATGAGT
GCAAGAAGATGAAGTACGGGAATCTGGCAAAGCTGTTGAAGGAGATCGAG
GTAGAGTTTGGAAAGCATGCCTTCTTTTCACGAGCGGCGGATGGCACGAT
CACTCAGGTGCAGCAGGGGGTGGTGAGGACGAATTGTTTGGATAATCTGG
ATCGGACGAATGTAGTGCAAAGCATTATAGGCCGGCGTTCGCTGTTAATG
CAGTTGGGGGAGACCAAAGCCTTGGCACTGGACGGGGCGCATGTATTGGA
GTCTCCTTTCCCGTCGTTTGAGAAGGTGTTCAAGGACATGTGGGGGAATA
ACGCGGATGCTATTTCTGTCCTCTATTCTGGCACAGGGGCGCTCAAGACC
GATTTTACCCGTACAGGGAAGCGGACCATTCGTGGGGCCCTACAAGATGG
CGTAAACTCGGTCATGCGGTATTATAAGAACAATTTCGTCGACGCCACTC
GTCAGGATGCGTTGGATTTGATGCTGGGTCGTTTCCGTCCTGACCCTGCC
AACCCGTCCCCCTTCCTGTATCCGCCTGCGGAGCAAGAGGCATTCTCTTC
CTTTATGACCAAGGTCTTTGTCATTTTGGTAACAACTTTCTCGCTGTCTA
TGCTTATTAAGCCTCAGGAGAAGGCTTTGCCGCAGCTGTTCCTCCTTTCT
CTTCTCGTAACCTTTCTCATTCTTGCTCTCGTGGCACGGCACGTCTTGAC
CAAGGGGGGAAAGATTGGCCAGGGACTCGTTGCCAAGCCTCGGCTGGTGC
CGGAGCCGTATGTCTACACATTCTACTCCGCGACATGGTGATATTGAGAG
AAGGAAATGGGAAATGGACAGGGTGGGGGAATTGTTGTAGCACTAAAAGG
AAAAGAGGGGGTGGGGGTGGGGAGGTTGGCGAGTAGGGAGCTGGGGAGTT
TGCTTGCAGCTGCAGCTGTCGGAAGTGTAGGCACTCAGTAGTTATTTTGG
AACCGGCACAGGGTTGTTATTTTGATATCGGAA

Coding sequence (CDS) from alignment at scaffold_2:667507..669689-

>mRNA_889 ID=mRNA_889|Name=jgi.p|Nanoce1779_2|574529|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at scaffold_2:667507..669689- (Nannochloropsis oceanica)
ATGACCACCAAACCCTTCATGCTGCACCTCTTTGACGACCGGGTGGCCCT
GGAGCGTACGGACTCGGGGGCGGCTCTGGTCATCTCGCGCAGCATCCCCG
AGGCGCCCTTGGAAGCCTACGTCGATGAGCGGGGCAAGGTCTTAAAAGAA
GTCTCAGGTGGCCAACTTATTCCTGTGGACGCCCTCTTTGGCATCTACCA
TCTACTCTCGGGGCCATATTTGGTGCTGGTGACAGATTCGGAGGTGGCAG
TGGGCTTGGGTGGGGGAGTGGACTTTCGCAAAGTAACAAAGGCGGCGATC
ATCCCCCTGATCAAGTCTGGCGTGCCTCTGTCGGACGAGAAGCAAGCGGA
CGAAGACCGGTACCTGGAGCTGTTGCACCTGGCCATATCCAGCCATCATT
TTTACTTTAGCTACACGTATGACGTGACGCACACCTTACAGCGGATAGCA
TGCATGACAGCCGAGGACAGGGCCAAAAGGCCACTGTGGCAACGGGCAGA
CGACCGCTTCTTTTGGAATCGCGATGTCGTGGGCGAGCTGGTTGCGGTAA
AGGCACACGACTGGATCGTACCCATGATGAATGCCTACGTGGACCTTCGG
CAGAATTGCAACGCTGGCATGCATCGTTTTCAGATGTTGTTTGTCTCGAG
ACGGTCGCGGTTTCGTCAGGGGTGCCGGTTCACCATGCGGGGGGCGGATG
ATGAGGGGCATGTGGCCAATTTTGTGGAGACGGAGCAGGCATTGTTGCAC
GAAGATGGGCGACAGACAGCATTAGTCCAGGTTAGAGGGTCGATTCCGCT
GCAATGGCATTCACCGGTGTGCTTGAAGTACACGCCGCGAGTTTATTTTG
GGGATGCGGCCAAGGGACAGGCGGCCGCGAAGAAGCACGTGGAGGAGTTG
GTGGAGAACTATGGACCGGAGGGGGTCGTGTTTGTGAATTTGGTGAATAT
GAAAAAGGATGAACAGGCGTTGGGGATTCGGTTTAAACAGGCGATTGATG
AGTTGACGGATAAGGCGTTGAGGTATGTTTGGTTTGATTTTCACCATGAG
TGCAAGAAGATGAAGTACGGGAATCTGGCAAAGCTGTTGAAGGAGATCGA
GGTAGAGTTTGGAAAGCATGCCTTCTTTTCACGAGCGGCGGATGGCACGA
TCACTCAGGTGCAGCAGGGGGTGGTGAGGACGAATTGTTTGGATAATCTG
GATCGGACGAATGTAGTGCAAAGCATTATAGGCCGGCGTTCGCTGTTAAT
GCAGTTGGGGGAGACCAAAGCCTTGGCACTGGACGGGGCGCATGTATTGG
AGTCTCCTTTCCCGTCGTTTGAGAAGGTGTTCAAGGACATGTGGGGGAAT
AACGCGGATGCTATTTCTGTCCTCTATTCTGGCACAGGGGCGCTCAAGAC
CGATTTTACCCGTACAGGGAAGCGGACCATTCGTGGGGCCCTACAAGATG
GCGTAAACTCGGTCATGCGGTATTATAAGAACAATTTCGTCGACGCCACT
CGTCAGGATGCGTTGGATTTGATGCTGGGTCGTTTCCGTCCTGACCCTGC
CAACCCGTCCCCCTTCCTGTATCCGCCTGCGGAGCAAGAGGCATTCTCTT
CCTTTATGACCAAGGTCTTTGTCATTTTGGTAACAACTTTCTCGCTGTCT
ATGCTTATTAAGCCTCAGGAGAAGGCTTTGCCGCAGCTGTTCCTCCTTTC
TCTTCTCGTAACCTTTCTCATTCTTGCTCTCGTGGCACGGCACGTCTTGA
CCAAGGGGGGAAAGATTGGCCAGGGACTCGTTGCCAAGCCTCGGCTGGTG
CCGGAGCCGTATGTCTACACATTCTACTCCGCGACATGGTGA

Synonyms

Publications