jgi.p|Nanoce1779_2|604372, mRNA_8887 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604372
Unique NamemRNA_8887
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length961
Alignment locationscaffold_29:95529..96850 +

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Properties
Property NameValue
TranscriptId604458
TrackFilteredModels2
ProteinId604372
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:95529..96850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604372gene_8887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604372mRNA_8887-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8887CDS_8887Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8887 ID=mRNA_8887|Name=jgi.p|Nanoce1779_2|604372|organism=Nannochloropsis oceanica|type=mRNA|length=961bp
ACAGGCACAGTTTTCGTTCTCACGAAACCAAGCAACCATGATTGTGTACA
AGGATGTTATCAGCGGCGACGAAGTGGTCTCGGACGCTCTCAAGATCACG
CCCGTGATGGAAGGCGGTGAGGAGGTGCCCGGCTTGTTCGAAGTAGACTC
TGCCATGGTGGCTGTCGGCGGTGGCGATATCGATATTGGATGTGGCAATG
CCTTCGGTGGTGCCGGTGATGACGAAGGCGCTGACGACGCAACCCAGAAG
GAGAATAACGTGTCGGGCCCCAGCAGCTTTGCCTATACCGCCATGCCCTT
TTCCAGTAAGGGAGAGTTCAAAAGTTGGGTGAAGGATTATGTGCGCAATG
TGCGCCAGGCGTTGAAGGGCAGTGGGGTGGCGGTTGAGGACATCAAGAAA
TTCATGGAGGAGGCCCCTACTTTTGTGAAGTGGCTAGTAGACAAGTATGA
CGACTTGGAGTTCTTTATGAGCAAGTCTATGAATCCGGATGCGGGGCTGA
TTTTCTCCTATTACAAGGAAGGGGCGCATTGCCCGACGTTCGTATACGTG
AAGAGTGGGTACAAGGTGGTCAAGTTTTAAATTAAAGCAAGGATGGTAGA
AAGGGGAGTGTTGAAGGGGTGGGGGATGACTTTTTTGTTGAAGATAGGAG
AGAAGCAGCAAGGGTAGGAGAAAGAGGTGAAGACCAGCAACAAAATAAGG
AGCGTGAGTGACAGGGCACGGGCGGGTGGAAAGAAGCATTGAAGCACAGC
ACCAACAACCACCAAAGAAGAACGGGCAGTGAGAGTTGGCCATTATAAGC
GCTAATCTTCAAGAGAAAATGGTGTCTTTGTGTTGTGTGCTTGTGGTGCC
AACTTCACCGCCGTGGTGCTGCTGGACTCGCTCTTTGTGAAAACAAGAGA
GGAGAAGGAGTGAAGCGGGTGGGGCGACTGCAAACAAGTAAGAAAGCTTG
AGTCTCTAAAA
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protein sequence of jgi.p|Nanoce1779_2|604372

>mRNA_8887-protein ID=mRNA_8887-protein|Name=jgi.p|Nanoce1779_2|604372|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MIVYKDVISGDEVVSDALKITPVMEGGEEVPGLFEVDSAMVAVGGGDIDI
GCGNAFGGAGDDEGADDATQKENNVSGPSSFAYTAMPFSSKGEFKSWVKD
YVRNVRQALKGSGVAVEDIKKFMEEAPTFVKWLVDKYDDLEFFMSKSMNP
DAGLIFSYYKEGAHCPTFVYVKSGYKVVKF*
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mRNA from alignment at scaffold_29:95529..96850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8887 ID=mRNA_8887|Name=jgi.p|Nanoce1779_2|604372|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at scaffold_29:95529..96850+ (Nannochloropsis oceanica)
ACAGGCACAGTTTTCGTTCTCACGAAACCAAGCAACCATGATTGTGTACA
AGGATGTTATCAGCGGCGACGAAGTGGTGAGTGCGTGCCTCTCCTCACTC
CCATTCATATGCCTCAATTGCATATCTGTCTGTTTGAGTCCCTCGTTTAC
TCGCTTTGCGATTATTGCTTTATGGTGGAAAGGTTTGGTGTGTGGTTGGT
GGGTGGGACAGAAGGGGTAGGAGACAGGCACATATCTGGGGGGAATGTAA
TTATGGTGGGAGCGACGCCTCGTATAATCCAGTCCATCCTCGCTGTCCTT
CGCCAAGCGTCCGTGGGTAAAGCATTCATCCTTTCTTCCTCTGACTTGTG
CATTTTTCTTACTCTCTTTCAAACCATGCGCTCCCGTTTATTTCATCCCT
ACCCTTCTTCTCTCCCTCCCCTCGCCCTCCCCTCCAGGTCTCGGACGCTC
TCAAGATCACGCCCGTGATGGAAGGCGGTGAGGAGGTGCCCGGCTTGTTC
GAAGTAGACTCTGCCATGGTGGCTGTCGGCGGTGGCGATATCGATATTGG
ATGTGGCAATGCCTTCGGTGGTGCCGGTGATGACGAAGGCGCTGACGACG
CAACCCAGAAGGAGAATAACGTGTCGGGCCCCAGCAGCTTTGCCTATACC
GCCATGCCCTTTTCCAGTAAGGGAGAGTTCAAAAGTTGGGTGAAGGATTA
TGTGCGCAATGTGCGCCAGGCGTTGAAGGGCAGTGGGGTGGCGGTTGAGG
ACATCAAGAAATTCATGGAGGAGGCCCCTACTTTTGTGAAGTGGCTAGTA
GACAAGTATGACGACTTGGAGTTCTTTATGAGCAAGTCTATGAATCCGGA
TGCGGGGCTGATTTTCTCCTATTACAAGGAAGGGGCGCATTGCCCGACGT
TCGTATACGTGAAGAGTGGGTACAAGGTGGTCAAGTTTTAAATTAAAGCA
AGGATGGTAGAAAGGGGAGTGTTGAAGGGGTGGGGGATGACTTTTTTGTT
GAAGATAGGAGAGAAGCAGCAAGGGTAGGAGAAAGAGGTGAAGACCAGCA
ACAAAATAAGGAGCGTGAGTGACAGGGCACGGGCGGGTGGAAAGAAGCAT
TGAAGCACAGCACCAACAACCACCAAAGAAGAACGGGCAGTGAGAGTTGG
CCATTATAAGCGCTAATCTTCAAGAGAAAATGGTGTCTTTGTGTTGTGTG
CTTGTGGTGCCAACTTCACCGCCGTGGTGCTGCTGGACTCGCTCTTTGTG
AAAACAAGAGAGGAGAAGGAGTGAAGCGGGTGGGGCGACTGCAAACAAGT
AAGAAAGCTTGAGTCTCTAAAA
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Coding sequence (CDS) from alignment at scaffold_29:95529..96850+

>mRNA_8887 ID=mRNA_8887|Name=jgi.p|Nanoce1779_2|604372|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_29:95529..96850+ (Nannochloropsis oceanica)
ATGATTGTGTACAAGGATGTTATCAGCGGCGACGAAGTGGTCTCGGACGC
TCTCAAGATCACGCCCGTGATGGAAGGCGGTGAGGAGGTGCCCGGCTTGT
TCGAAGTAGACTCTGCCATGGTGGCTGTCGGCGGTGGCGATATCGATATT
GGATGTGGCAATGCCTTCGGTGGTGCCGGTGATGACGAAGGCGCTGACGA
CGCAACCCAGAAGGAGAATAACGTGTCGGGCCCCAGCAGCTTTGCCTATA
CCGCCATGCCCTTTTCCAGTAAGGGAGAGTTCAAAAGTTGGGTGAAGGAT
TATGTGCGCAATGTGCGCCAGGCGTTGAAGGGCAGTGGGGTGGCGGTTGA
GGACATCAAGAAATTCATGGAGGAGGCCCCTACTTTTGTGAAGTGGCTAG
TAGACAAGTATGACGACTTGGAGTTCTTTATGAGCAAGTCTATGAATCCG
GATGCGGGGCTGATTTTCTCCTATTACAAGGAAGGGGCGCATTGCCCGAC
GTTCGTATACGTGAAGAGTGGGTACAAGGTGGTCAAGTTTTAAATGATTG
TGTACAAGGATGTTATCAGCGGCGACGAAGTGGTCTCGGACGCTCTCAAG
ATCACGCCCGTGATGGAAGGCGGTGAGGAGGTGCCCGGCTTGTTCGAAGT
AGACTCTGCCATGGTGGCTGTCGGCGGTGGCGATATCGATATTGGATGTG
GCAATGCCTTCGGTGGTGCCGGTGATGACGAAGGCGCTGACGACGCAACC
CAGAAGGAGAATAACGTGTCGGGCCCCAGCAGCTTTGCCTATACCGCCAT
GCCCTTTTCCAGTAAGGGAGAGTTCAAAAGTTGGGTGAAGGATTATGTGC
GCAATGTGCGCCAGGCGTTGAAGGGCAGTGGGGTGGCGGTTGAGGACATC
AAGAAATTCATGGAGGAGGCCCCTACTTTTGTGAAGTGGCTAGTAGACAA
GTATGACGACTTGGAGTTCTTTATGAGCAAGTCTATGAATCCGGATGCGG
GGCTGATTTTCTCCTATTACAAGGAAGGGGCGCATTGCCCGACGTTCGTA
TACGTGAAGAGTGGGTACAAGGTGGTCAAGTTTTAA
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Synonyms
Publications