jgi.p|Nanoce1779_2|604369, mRNA_8886 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604369
Unique Name	mRNA_8886
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2207
Alignment location	scaffold_29:92509..94715 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604455
Track	FilteredModels2
ProteinId	604369

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:92509..94715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604369	gene_8886	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604369	mRNA_8886-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8886	CDS_8886	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:92509..94715+
coding sequence from alignment at scaffold_29:92509..94715+

mRNA sequence

>mRNA_8886 ID=mRNA_8886|Name=jgi.p|Nanoce1779_2|604369|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp
GCAGCAGCAGCAGCAGCAGCAGCAACCGCACCTGCCCTTGGCTGCGCGGA
CGGCTGGCTGCAAGGAGACACACAGCAACAAGCGCGAACAGTCTCCGGCC
GAGCAGCTGGAGGACATGCGGACCACGCCTATCAAATGCCGCGACGGCAC
CTTGGTCTACCCCTACTCCCTACCCACGCGTGACGACCAGCTGGGCCGTC
TGAAGAAGGAGAGCTACGACGTTCTGGTGATTGGCGGAGGATGCGTCGGG
TCCGGCGTAGCCTTGGACGCGCAAGTTCGCGGCTTGAAGACGGCCATGGT
GGAAGCGGACGATTTTTCGGCGGGTACGTCGGGGAGATCGACTAAACTGA
TTCACGGAGGCATTCGGTACTTGGAGACGGCCTTTTGGAAGTTGGACTAC
GGGTCTTTCACCCTCGTGCAAGAAGCGTTGGAGGAACGGGCACATATGTT
GAATGCGGCGCCGTATATGAATTCGCCGTTGCCGATCATGATTCCTATCT
ATAAGTGGTGGGAGGTGCCTTATTTTTGGGCAGGAGCCAAAGCTTACGAC
CTGGTGGCAAGCCGACAGAAGAGTGTGCCGTCCTCTCATTTTATGGACGC
GGATGAGGCGCTGTTCCAGTTCCCGATGCTCAGGGGGAATGGATTGAAGG
GGGCAATTATTTATTATGACGGGCAGATGAACGACACGAGGATGGGGTTG
ACTATTGCTCTGACAGCAGCGCAGGAGGGCGCCACGATCGCGAACCGTGT
GGAGGTCGTCTCTCTCCTCAAAGATCCTCAAACTGGCGTCGTCTCCGGGG
CCCGGGTCCGGGACAAGATAAAGGGGGATGAATGGGAAATCCATGCCAAA
GTCGTCGTGAACGCCACGGGGGTGTTCGCTGACAAAATTCGCAAGATGGA
CAACCCGGAAGCGATCGAGCTCATCGAGCCCGCAGCAGGTGTCCACGTCA
TGTTTCCCGCCCACTTTTCGCCCGCCAAAATGGGGCTAATTGTTCCAAAG
ACCACCGATGGTCGTGTCCTCTTTTTCCTGCCTTGGGAAGGCTGCACTCT
TGCCGGGACGACGGACTCACATTCGACCATAACTATGACGCCCCAGCCGA
CCGCCCAAGAAGTCAATTTCATCATGCAAGAGACCAATCGCTACCTCACC
ACGAACGTCTCTGCTAACGACCTCATCGCTGCCTGGTCTGGCCTCCGTCC
CCTGGTCAAGGATCCTGAAAAGATCAGAGAGGGAACCGCGGCCTTGTCGC
GCAACCATGTAATCGAAGTGTCTGACAGCGGGAAATTAATAACCATTACA
GGGGGGAAATGGACCACCTACAGGAGGATGGCTGAAGACACAGTCGATCG
CCTTCTTGCTGAGAGACCGGAGTTGTTGGTCGATGGCGCCGTGGCCCTCA
ATTCCAGTACCTGGAACATGAAGCTCCTGGGGGCGGACAGGGCGAGGATT
GTGTGCGATCAGAAGTTCAATAAAATTGGGATTACTCTTAGGAATGACTA
TGAGCTGCCTGAGGACGTGGCAGCGCACCTCGTCAAGAGCTATGGCACTC
GGGCGTTGCAAGTGGCGGAGCTGGTGCGTACGGGGTATACAGATGTGAAG
GCCGGGACGAGAATGAAGAGGTTGCACATGCGCTACCCTTTCTTGGAGGC
CGAAGTCGTGTTTGCTGTGGAGCAGGAATACGCCTTGAAGCCCATGGATA
TTTTGGCACGACGTACTCGGCTAGCTTTCCTTGATACGGAAGCAACGGCG
ACAGCAATCCCGCGGGTGGTGAAGCTGATGGGGGATCTACTAGGATGGTC
TTGGAGGCAGAGGGCGGCGGAGACGGCGGAGGCGGTGGCCTTTTTGGAGA
CGATGAATGTGAACAAGGTGGCGTTGTTGAAGAGCAATAAGAAGAAATAA
TGGATGTGACAGAAGTAGGGAAGGGCAGAAGTTTATAGGTATGTGCTAGA
TCAGCTTTGGAGAACGGGTGTAGATAAAAATGAGCAGAGGAGAGTGTGTT
TTGTTTGCTGGTGCGGGAACATGTTGCCGGCATTACTTCTAGAAAAGAAG
TAACATAAATTAGTTATTAAATAATTGAGTCGTGGTTCCTTTTTCGAGAT
AAAGAAGACATCTTCGCCCGGGGACGAGGCCATGTCAACGCCCACTGCAC
GCTACGATGAAAGTAGAGTAAACACCAAAGCAGAAGGAAGTGCACGTAAG
ATGCATA

protein sequence of jgi.p|Nanoce1779_2|604369

>mRNA_8886-protein ID=mRNA_8886-protein|Name=jgi.p|Nanoce1779_2|604369|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MRTTPIKCRDGTLVYPYSLPTRDDQLGRLKKESYDVLVIGGGCVGSGVAL
DAQVRGLKTAMVEADDFSAGTSGRSTKLIHGGIRYLETAFWKLDYGSFTL
VQEALEERAHMLNAAPYMNSPLPIMIPIYKWWEVPYFWAGAKAYDLVASR
QKSVPSSHFMDADEALFQFPMLRGNGLKGAIIYYDGQMNDTRMGLTIALT
AAQEGATIANRVEVVSLLKDPQTGVVSGARVRDKIKGDEWEIHAKVVVNA
TGVFADKIRKMDNPEAIELIEPAAGVHVMFPAHFSPAKMGLIVPKTTDGR
VLFFLPWEGCTLAGTTDSHSTITMTPQPTAQEVNFIMQETNRYLTTNVSA
NDLIAAWSGLRPLVKDPEKIREGTAALSRNHVIEVSDSGKLITITGGKWT
TYRRMAEDTVDRLLAERPELLVDGAVALNSSTWNMKLLGADRARIVCDQK
FNKIGITLRNDYELPEDVAAHLVKSYGTRALQVAELVRTGYTDVKAGTRM
KRLHMRYPFLEAEVVFAVEQEYALKPMDILARRTRLAFLDTEATATAIPR
VVKLMGDLLGWSWRQRAAETAEAVAFLETMNVNKVALLKSNKKK*

mRNA from alignment at scaffold_29:92509..94715+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8886 ID=mRNA_8886|Name=jgi.p|Nanoce1779_2|604369|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp|location=Sequence derived from alignment at scaffold_29:92509..94715+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAACCGCACCTGCCCTTGGCTGCGCGGA
CGGCTGGCTGCAAGGAGACACACAGCAACAAGCGCGAACAGTCTCCGGCC
GAGCAGCTGGAGGACATGCGGACCACGCCTATCAAATGCCGCGACGGCAC
CTTGGTCTACCCCTACTCCCTACCCACGCGTGACGACCAGCTGGGCCGTC
TGAAGAAGGAGAGCTACGACGTTCTGGTGATTGGCGGAGGATGCGTCGGG
TCCGGCGTAGCCTTGGACGCGCAAGTTCGCGGCTTGAAGACGGCCATGGT
GGAAGCGGACGATTTTTCGGCGGGTACGTCGGGGAGATCGACTAAACTGA
TTCACGGAGGCATTCGGTACTTGGAGACGGCCTTTTGGAAGTTGGACTAC
GGGTCTTTCACCCTCGTGCAAGAAGCGTTGGAGGAACGGGCACATATGTT
GAATGCGGCGCCGTATATGAATTCGCCGTTGCCGATCATGATTCCTATCT
ATAAGTGGTGGGAGGTGCCTTATTTTTGGGCAGGAGCCAAAGCTTACGAC
CTGGTGGCAAGCCGACAGAAGAGTGTGCCGTCCTCTCATTTTATGGACGC
GGATGAGGCGCTGTTCCAGTTCCCGATGCTCAGGGGGAATGGATTGAAGG
GGGCAATTATTTATTATGACGGGCAGATGAACGACACGAGGATGGGGTTG
ACTATTGCTCTGACAGCAGCGCAGGAGGGCGCCACGATCGCGAACCGTGT
GGAGGTCGTCTCTCTCCTCAAAGATCCTCAAACTGGCGTCGTCTCCGGGG
CCCGGGTCCGGGACAAGATAAAGGGGGATGAATGGGAAATCCATGCCAAA
GTCGTCGTGAACGCCACGGGGGTGTTCGCTGACAAAATTCGCAAGATGGA
CAACCCGGAAGCGATCGAGCTCATCGAGCCCGCAGCAGGTGTCCACGTCA
TGTTTCCCGCCCACTTTTCGCCCGCCAAAATGGGGCTAATTGTTCCAAAG
ACCACCGATGGTCGTGTCCTCTTTTTCCTGCCTTGGGAAGGCTGCACTCT
TGCCGGGACGACGGACTCACATTCGACCATAACTATGACGCCCCAGCCGA
CCGCCCAAGAAGTCAATTTCATCATGCAAGAGACCAATCGCTACCTCACC
ACGAACGTCTCTGCTAACGACCTCATCGCTGCCTGGTCTGGCCTCCGTCC
CCTGGTCAAGGATCCTGAAAAGATCAGAGAGGGAACCGCGGCCTTGTCGC
GCAACCATGTAATCGAAGTGTCTGACAGCGGGAAATTAATAACCATTACA
GGGGGGAAATGGACCACCTACAGGAGGATGGCTGAAGACACAGTCGATCG
CCTTCTTGCTGAGAGACCGGAGTTGTTGGTCGATGGCGCCGTGGCCCTCA
ATTCCAGTACCTGGAACATGAAGCTCCTGGGGGCGGACAGGGCGAGGATT
GTGTGCGATCAGAAGTTCAATAAAATTGGGATTACTCTTAGGAATGACTA
TGAGCTGCCTGAGGACGTGGCAGCGCACCTCGTCAAGAGCTATGGCACTC
GGGCGTTGCAAGTGGCGGAGCTGGTGCGTACGGGGTATACAGATGTGAAG
GCCGGGACGAGAATGAAGAGGTTGCACATGCGCTACCCTTTCTTGGAGGC
CGAAGTCGTGTTTGCTGTGGAGCAGGAATACGCCTTGAAGCCCATGGATA
TTTTGGCACGACGTACTCGGCTAGCTTTCCTTGATACGGAAGCAACGGCG
ACAGCAATCCCGCGGGTGGTGAAGCTGATGGGGGATCTACTAGGATGGTC
TTGGAGGCAGAGGGCGGCGGAGACGGCGGAGGCGGTGGCCTTTTTGGAGA
CGATGAATGTGAACAAGGTGGCGTTGTTGAAGAGCAATAAGAAGAAATAA
TGGATGTGACAGAAGTAGGGAAGGGCAGAAGTTTATAGGTATGTGCTAGA
TCAGCTTTGGAGAACGGGTGTAGATAAAAATGAGCAGAGGAGAGTGTGTT
TTGTTTGCTGGTGCGGGAACATGTTGCCGGCATTACTTCTAGAAAAGAAG
TAACATAAATTAGTTATTAAATAATTGAGTCGTGGTTCCTTTTTCGAGAT
AAAGAAGACATCTTCGCCCGGGGACGAGGCCATGTCAACGCCCACTGCAC
GCTACGATGAAAGTAGAGTAAACACCAAAGCAGAAGGAAGTGCACGTAAG
ATGCATA

Coding sequence (CDS) from alignment at scaffold_29:92509..94715+

>mRNA_8886 ID=mRNA_8886|Name=jgi.p|Nanoce1779_2|604369|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at scaffold_29:92509..94715+ (Nannochloropsis oceanica)
ATGCGGACCACGCCTATCAAATGCCGCGACGGCACCTTGGTCTACCCCTA
CTCCCTACCCACGCGTGACGACCAGCTGGGCCGTCTGAAGAAGGAGAGCT
ACGACGTTCTGGTGATTGGCGGAGGATGCGTCGGGTCCGGCGTAGCCTTG
GACGCGCAAGTTCGCGGCTTGAAGACGGCCATGGTGGAAGCGGACGATTT
TTCGGCGGGTACGTCGGGGAGATCGACTAAACTGATTCACGGAGGCATTC
GGTACTTGGAGACGGCCTTTTGGAAGTTGGACTACGGGTCTTTCACCCTC
GTGCAAGAAGCGTTGGAGGAACGGGCACATATGTTGAATGCGGCGCCGTA
TATGAATTCGCCGTTGCCGATCATGATTCCTATCTATAAGTGGTGGGAGG
TGCCTTATTTTTGGGCAGGAGCCAAAGCTTACGACCTGGTGGCAAGCCGA
CAGAAGAGTGTGCCGTCCTCTCATTTTATGGACGCGGATGAGGCGCTGTT
CCAGTTCCCGATGCTCAGGGGGAATGGATTGAAGGGGGCAATTATTTATT
ATGACGGGCAGATGAACGACACGAGGATGGGGTTGACTATTGCTCTGACA
GCAGCGCAGGAGGGCGCCACGATCGCGAACCGTGTGGAGGTCGTCTCTCT
CCTCAAAGATCCTCAAACTGGCGTCGTCTCCGGGGCCCGGGTCCGGGACA
AGATAAAGGGGGATGAATGGGAAATCCATGCCAAAGTCGTCGTGAACGCC
ACGGGGGTGTTCGCTGACAAAATTCGCAAGATGGACAACCCGGAAGCGAT
CGAGCTCATCGAGCCCGCAGCAGGTGTCCACGTCATGTTTCCCGCCCACT
TTTCGCCCGCCAAAATGGGGCTAATTGTTCCAAAGACCACCGATGGTCGT
GTCCTCTTTTTCCTGCCTTGGGAAGGCTGCACTCTTGCCGGGACGACGGA
CTCACATTCGACCATAACTATGACGCCCCAGCCGACCGCCCAAGAAGTCA
ATTTCATCATGCAAGAGACCAATCGCTACCTCACCACGAACGTCTCTGCT
AACGACCTCATCGCTGCCTGGTCTGGCCTCCGTCCCCTGGTCAAGGATCC
TGAAAAGATCAGAGAGGGAACCGCGGCCTTGTCGCGCAACCATGTAATCG
AAGTGTCTGACAGCGGGAAATTAATAACCATTACAGGGGGGAAATGGACC
ACCTACAGGAGGATGGCTGAAGACACAGTCGATCGCCTTCTTGCTGAGAG
ACCGGAGTTGTTGGTCGATGGCGCCGTGGCCCTCAATTCCAGTACCTGGA
ACATGAAGCTCCTGGGGGCGGACAGGGCGAGGATTGTGTGCGATCAGAAG
TTCAATAAAATTGGGATTACTCTTAGGAATGACTATGAGCTGCCTGAGGA
CGTGGCAGCGCACCTCGTCAAGAGCTATGGCACTCGGGCGTTGCAAGTGG
CGGAGCTGGTGCGTACGGGGTATACAGATGTGAAGGCCGGGACGAGAATG
AAGAGGTTGCACATGCGCTACCCTTTCTTGGAGGCCGAAGTCGTGTTTGC
TGTGGAGCAGGAATACGCCTTGAAGCCCATGGATATTTTGGCACGACGTA
CTCGGCTAGCTTTCCTTGATACGGAAGCAACGGCGACAGCAATCCCGCGG
GTGGTGAAGCTGATGGGGGATCTACTAGGATGGTCTTGGAGGCAGAGGGC
GGCGGAGACGGCGGAGGCGGTGGCCTTTTTGGAGACGATGAATGTGAACA
AGGTGGCGTTGTTGAAGAGCAATAAGAAGAAATAA

Synonyms

Publications