jgi.p|Nanoce1779_2|224079, mRNA_8884 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|224079
Unique NamemRNA_8884
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1380
Alignment locationscaffold_29:88539..90428 -

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Properties
Property NameValue
TranscriptId224165
TrackFilteredModels2
ProteinId224079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:88539..90428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|224079gene_8884Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|224079mRNA_8884-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8884CDS_8884Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8884 ID=mRNA_8884|Name=jgi.p|Nanoce1779_2|224079|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
AAACGGAATCAGAATGAATTTTTATTTTAATTTACAGGCTCTTTCGTCTT
GCGGATTGGCTCTGACTTCCCAGCTCTGAGAAAAACAAAGAAGAAGAAAC
CAGGAAACCACACCCGGATCATTCACGTACTTGCCTACCCACTTGGGCCG
GTCCCCAACGTGCTTTAACGTCCCCATTCACTCACTCTCACGCACTCCTA
CCCCCACCCACTTGTAATACAGGCCATGGAGGATTCAACGCTTGATGGCG
GCAGCAATCGTGTGCAAGGCGGTGGCGGGGCCATGGTTGCCCAAGAGCAA
GACACATTGCTGCTCATGCCCTTGCCCGCCGCAGCACCCGCCGAAACCCA
CCACCGTGATCACGATAGCCGTGGCCACGAGGACCAGCAACACCAGCTGA
CCACCAACGTGGATATGGGTGCCCTCATACTGCCCTGCGAGCCCCATGTG
GCTGCTCCTCGATCACTCTTGATTGGCCCACCACCGTCAAGCAGCAGTAG
CCTCCCTCCAGCCCCCACCGCCATCACACCCCCACTCACCTCGGCACAAG
GCGGTCCTTGGGCATGCTTCGAGTCTGCCGGCGCATTTCCTCGTGTCGCT
CATCGACATCTCTACCTTTGGTTGGACCAAATATTGACCAGTCTGCCGGA
AGACGAGCAACGGCGTGCGAAAGAGGTGGGGCCGCTCGAGTCGTTTTACC
AGGAGGTTGCCAATGCAAACGCAGCTAATTCCCTGTACGACCACAGTAAG
GTCACAGAATTTGTCAACAAACCTTCTCCGCACTCCCTCCTCCTCTTCCG
AAAGCTCGACCGAGATGACACCCCACCTATCATGCGCAAAAAGAGGAAGA
CGCTCAACCAGCAGCCGCAGCAGAGCGACGACGACGACAACTTTGAAACC
ACCTCTACATCCCCCACCAGAGTCACAGCACTCAAACGCAGCAGAACCTA
CCAAAAAAATGATCAAACAATCACCTCCACTGCCACGGCCCTCAACAGCA
GCACTGGCACCATCAACCTCTCTACTAATGTCCTAAAGCGGTGGAATCGA
AGCAACGGGATGATTAACTGGTTCCTCTGGAAAGTCGGAGCGAAGCCCCC
AGCCACCGAAGAGGTCCTACAGCTCTCCCGCGTGCATGCTGCTAAGACGT
TGTTGAAGAAAACAGATAATAAACGAGAATTTGGCGAAGGAGAAGCAACC
CCTGAACCCACTTACTAGTGTTGTCGTTGCTGCTGCGGCTGGTGGTGGTG
GTGATGGTGGTGCGAGTACCACTACTCAGATAAGAGGAGGAGGAGGAGAA
GACGGAGGGGAGGAAGGAGAAACGAATGGAGACAAAGACAATATAGAGCA
GCAAGGGAAGGAAGAGAAGAACCAGGAGAA
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protein sequence of jgi.p|Nanoce1779_2|224079

>mRNA_8884-protein ID=mRNA_8884-protein|Name=jgi.p|Nanoce1779_2|224079|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MEDSTLDGGSNRVQGGGGAMVAQEQDTLLLMPLPAAAPAETHHRDHDSRG
HEDQQHQLTTNVDMGALILPCEPHVAAPRSLLIGPPPSSSSSLPPAPTAI
TPPLTSAQGGPWACFESAGAFPRVAHRHLYLWLDQILTSLPEDEQRRAKE
VGPLESFYQEVANANAANSLYDHSKVTEFVNKPSPHSLLLFRKLDRDDTP
PIMRKKRKTLNQQPQQSDDDDNFETTSTSPTRVTALKRSRTYQKNDQTIT
STATALNSSTGTINLSTNVLKRWNRSNGMINWFLWKVGAKPPATEEVLQL
SRVHAAKTLLKKTDNKREFGEGEATPEPTY*
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mRNA from alignment at scaffold_29:88539..90428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8884 ID=mRNA_8884|Name=jgi.p|Nanoce1779_2|224079|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at scaffold_29:88539..90428- (Nannochloropsis oceanica)
AAACGGAATCAGAATGAATTTTTATTTTAATTTACAGGCTCTTTCGTCTT
GCGGATTGGCTCTGACTTCCCAGCTCTGAGAAAAACAAAGAAGAAGAAAC
CAGGAAACCACACCCGGATCATTCACGTACTTGCCTACCCACTTGGGCCG
GTCCCCAACGTGCTTTAACGTCCCCATTCACTCACTCTCACGCACTCCTA
CCCCCACCCACTTGTAATACAGGCCATGGAGGATTCAACGCTTGATGGCG
GCAGCAATCGTGTGCAAGGCGGTGGCGGGGCCATGGTTGCCCAAGAGCAA
GACACATTGCTGCTCATGCCCTTGCCCGCCGCAGCACCCGCCGAAACCCA
CCACCGTGATCACGATAGCCGTGGCCACGAGGACCAGCAACACCAGCTGA
CCACCAACGTGGATATGGGTGCCCTCATACTGCCCTGCGAGCCCCATGTG
GCTGCTCCTCGATCACTCTTGATTGGCCCACCACCGTCAAGCAGCAGTAG
CCTCCCTCCAGCCCCCACCGCCATCACACCCCCACTCACCTCGGCACAAG
GCGGTCCTTGGGCATGCTTCGAGTCTGCCGGCGCATTTCCTCGTGTCGCT
CATCGACATCTCTACCTTTGGTTGGACCAAATATTGACCAGTCTGCCGGA
AGACGAGCAACGGCGTGCGAAAGAGGTGGGGCCGCTCGAGTCGTTTTACC
AGGAGGTTGCCAATGCAAACGCAGCTAATTCCCTGTACGACCACAGTAAG
GTCACAGAATTTGTCAACAAACCTTCTCCGCACTCCCTCCTCCTCTTCCG
AAAGCTCGACCGAGATGACACCCCACCTATCATGCGCAAAAAGAGGAAGA
CGCTCAACCAGCAGCCGCAGCAGAGCGACGACGACGACAACTTTGAAACC
ACCTCTACATCCCCCACCAGAGTCACAGCACTCAAACGCAGCAGAACCTA
CCAAAAAAATGATCAAACAATCACCTCCACTGCCACGGCCCTCAACAGCA
GCACTGGCACCATCAACCTCTCTACTAATGTCCTAAAGCGGTGGAATCGA
AGCAACGGGATGATTAACTGGTTCCTCTGGAAAGTCGGAGCGAAGCCCCC
AGCCACCGAAGAGGTCCTACAGCTCTCCCGCGTGCATGCTGCTAAGACGT
TGTTGAAGAAAAGTAGTTCTGCCGCCGCTGCGGCTGCTGCTGCTGTTTCA
GCTGCTGCTGCTGCTGTGGTGACAGGGGCAGGTGGTATGCCTGCTGATGC
GCAGACACGGAGACGAAGGATGGGAGGGCTAAGGGAAGGAAGCCTGGTGA
AGATAAGGGGGACGATGTGAAGGAGGAGGGCGAGGAAGGGGCTGAAGGGT
TGGGAAAGTTGGCAGGAGCAGTTTGAAGAGAGAAAAGGAGGCGAAGTAGG
AGGAGAGGGAGGAGGAGGAGGAGGAGAGGGAGGAGGAAGAGGAGGAGGAG
AGGGGGAGGGTGCGAGCACCAGCAGTCGCGGTAGCTGCAACAGCAACATT
TCTAATCATATCCTATTCAAGCCCAACAGTACCGAGAAAGGAGAGGGCGA
GAGCACCAGCGACCACCACGTCAGCCGCAGGCAGTAGCCACCACAACCAC
ATCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAGCAGATAATAAACGAGAATTTGGCGAAGG
AGAAGCAACCCCTGAACCCACTTACTAGTGTTGTCGTTGCTGCTGCGGCT
GGTGGTGGTGGTGATGGTGGTGCGAGTACCACTACTCAGATAAGAGGAGG
AGGAGGAGAAGACGGAGGGGAGGAAGGAGAAACGAATGGAGACAAAGACA
ATATAGAGCAGCAAGGGAAGGAAGAGAAGAACCAGGAGAA
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Coding sequence (CDS) from alignment at scaffold_29:88539..90428-

>mRNA_8884 ID=mRNA_8884|Name=jgi.p|Nanoce1779_2|224079|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_29:88539..90428- (Nannochloropsis oceanica)
CAGATAATAAACGAGAATTTGGCGAAGGAGAAGCAACCCCTGAACCCACT
TACTAGATGGAGGATTCAACGCTTGATGGCGGCAGCAATCGTGTGCAAGG
CGGTGGCGGGGCCATGGTTGCCCAAGAGCAAGACACATTGCTGCTCATGC
CCTTGCCCGCCGCAGCACCCGCCGAAACCCACCACCGTGATCACGATAGC
CGTGGCCACGAGGACCAGCAACACCAGCTGACCACCAACGTGGATATGGG
TGCCCTCATACTGCCCTGCGAGCCCCATGTGGCTGCTCCTCGATCACTCT
TGATTGGCCCACCACCGTCAAGCAGCAGTAGCCTCCCTCCAGCCCCCACC
GCCATCACACCCCCACTCACCTCGGCACAAGGCGGTCCTTGGGCATGCTT
CGAGTCTGCCGGCGCATTTCCTCGTGTCGCTCATCGACATCTCTACCTTT
GGTTGGACCAAATATTGACCAGTCTGCCGGAAGACGAGCAACGGCGTGCG
AAAGAGGTGGGGCCGCTCGAGTCGTTTTACCAGGAGGTTGCCAATGCAAA
CGCAGCTAATTCCCTGTACGACCACAGTAAGGTCACAGAATTTGTCAACA
AACCTTCTCCGCACTCCCTCCTCCTCTTCCGAAAGCTCGACCGAGATGAC
ACCCCACCTATCATGCGCAAAAAGAGGAAGACGCTCAACCAGCAGCCGCA
GCAGAGCGACGACGACGACAACTTTGAAACCACCTCTACATCCCCCACCA
GAGTCACAGCACTCAAACGCAGCAGAACCTACCAAAAAAATGATCAAACA
ATCACCTCCACTGCCACGGCCCTCAACAGCAGCACTGGCACCATCAACCT
CTCTACTAATGTCCTAAAGCGGTGGAATCGAAGCAACGGGATGATTAACT
GGTTCCTCTGGAAAGTCGGAGCGAAGCCCCCAGCCACCGAAGAGGTCCTA
CAGCTCTCCCGCGTGCATGCTGCTAAGACGTTGTTGAAGAAAACAGATAA
TAAACGAGAATTTGGCGAAGGAGAAGCAACCCCTGAACCCACTTACTAGA
TGGAGGATTCAACGCTTGATGGCGGCAGCAATCGTGTGCAAGGCGGTGGC
GGGGCCATGGTTGCCCAAGAGCAAGACACATTGCTGCTCATGCCCTTGCC
CGCCGCAGCACCCGCCGAAACCCACCACCGTGATCACGATAGCCGTGGCC
ACGAGGACCAGCAACACCAGCTGACCACCAACGTGGATATGGGTGCCCTC
ATACTGCCCTGCGAGCCCCATGTGGCTGCTCCTCGATCACTCTTGATTGG
CCCACCACCGTCAAGCAGCAGTAGCCTCCCTCCAGCCCCCACCGCCATCA
CACCCCCACTCACCTCGGCACAAGGCGGTCCTTGGGCATGCTTCGAGTCT
GCCGGCGCATTTCCTCGTGTCGCTCATCGACATCTCTACCTTTGGTTGGA
CCAAATATTGACCAGTCTGCCGGAAGACGAGCAACGGCGTGCGAAAGAGG
TGGGGCCGCTCGAGTCGTTTTACCAGGAGGTTGCCAATGCAAACGCAGCT
AATTCCCTGTACGACCACAGTAAGGTCACAGAATTTGTCAACAAACCTTC
TCCGCACTCCCTCCTCCTCTTCCGAAAGCTCGACCGAGATGACACCCCAC
CTATCATGCGCAAAAAGAGGAAGACGCTCAACCAGCAGCCGCAGCAGAGC
GACGACGACGACAACTTTGAAACCACCTCTACATCCCCCACCAGAGTCAC
AGCACTCAAACGCAGCAGAACCTACCAAAAAAATGATCAAACAATCACCT
CCACTGCCACGGCCCTCAACAGCAGCACTGGCACCATCAACCTCTCTACT
AATGTCCTAAAGCGGTGGAATCGAAGCAACGGGATGATTAACTGGTTCCT
CTGGAAAGTCGGAGCGAAGCCCCCAGCCACCGAAGAGGTCCTACAGCTCT
CCCGCGTGCATGCTGCTAAGACGTTGTTGAAGAAAA
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Synonyms
Publications