jgi.p|Nanoce1779_2|604364, mRNA_8883 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604364
Unique Name	mRNA_8883
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1218
Alignment location	scaffold_29:87525..88742 +

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Properties


Property Name	Value
TranscriptId	604450
Track	FilteredModels2
ProteinId	604364

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:87525..88742 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604364	gene_8883	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604364	mRNA_8883-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8883	CDS_8883	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:87525..88742+
coding sequence from alignment at scaffold_29:87525..88742+

mRNA sequence

>mRNA_8883 ID=mRNA_8883|Name=jgi.p|Nanoce1779_2|604364|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
ACTTTCACAGCTCGATGCTCCTCCTCCTCCTCCTCCTACTCCCTACTCCT
CCTGCTCCCCCCCCTCCCAACACAAGCACGGTGGAGGGAAACGGACTACA
AGTGTACGTACCTCCTCCTACTAGTTCTTCTAACCCTCCTCCTCTTCTCT
CCCCTCCATCTCTTTTTTCTCCCCCTTCCTCTCCTCTTCCTCCTCTTCCA
TCTCCTCTGCTATGCTGCTTCTGTTGTTCCTGCTGCTGCGACTGCTGCCG
TTCTACTCAAAAATTAGGCGCTCCCGCCTCCTCAACTTGCATCCCTCCCT
CAATCCGATCCTCTGATCTCGCACTACGCTCCTTCCTCCCCCTTCCCTCT
TATCCTTCCCTTCGACTCTACCTCTCCCACTCTCTTCCCTTCCATTTCTT
GGTCTGCACTCTACCTCTTTCCCTCCTTCATTCCCTCTCCCTCGGCCCTC
TTCCTCTCAATCTTCCCCTCCCCTCCTCCTCTTCCACCTTCCCCCATTCC
CCCTCCATCTTACCCTTCCCCGGCCGGCCGCATCATCGGCCGCCTTCCTC
CCTTCCTCGTCCTCTCCTTCTGCTCCATTTACCATTCTGAAATCAAAAAC
ACAGGTATCCACCTTCATCCCCCTTGCTGCGCAATAATCAGCAAAGTGGT
GCCATATTTCCATTCTCCATCGACCAGCCTTCCATCCTTCCCTCGTCCGG
GACGAACATTACTTTCCCCCTTCCTTCTCTACTTCCTCCTCCCTCGGTCT
CCACCCGTCGCCAAAACCCTTGTTCGACAGCCGCTTGGACGGCAGGGAGG
GACAGACCTGCCCCTGCTCCTCCTGCAGCGTGGCGTGCTGAGAGGACGTT
AAATAGATTCTCGGCATCTGCGGCCATGATGCCTGCCATGTCGAGAGTGG
CAAGGCGAGGAAGGGAAGGAGGGAGGGGGGGGGGAAGGGAGAGGTAAGGT
GGGATCTCCTCTTTTCTTTTACCTCGGTTAAAGAACTTGTCGCCCTTGCT
GCTGCTCCTACTGCTTCTCCTGGTTCTTCTCTTCCTTCCCTTGCTGCTCT
ATATTGTCTTTGTCTCCATTCGTTTCTCCTTCCTCCCCTCCGTCTTCTCC
TCCTCCTCCTCTTATCTGAGTAGTGGTACTCGCACCACCATCACCACCAC
CACCAGCCGCAGCAGCAACGACAACACTAGTAAGTGGGTTCAGGGGTTGC
TTCTCCTTCGCCAAATTC

protein sequence of jgi.p|Nanoce1779_2|604364

>mRNA_8883-protein ID=mRNA_8883-protein|Name=jgi.p|Nanoce1779_2|604364|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLLLLLLLLPTPPAPPPPNTSTVEGNGLQVYVPPPTSSSNPPPLLSPPSL
FSPPSSPLPPLPSPLLCCFCCSCCCDCCRSTQKL

mRNA from alignment at scaffold_29:87525..88742+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8883 ID=mRNA_8883|Name=jgi.p|Nanoce1779_2|604364|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at scaffold_29:87525..88742+ (Nannochloropsis oceanica)
ACTTTCACAGCTCGATGCTCCTCCTCCTCCTCCTCCTACTCCCTACTCCT
CCTGCTCCCCCCCCTCCCAACACAAGCACGGTGGAGGGAAACGGACTACA
AGTGTACGTACCTCCTCCTACTAGTTCTTCTAACCCTCCTCCTCTTCTCT
CCCCTCCATCTCTTTTTTCTCCCCCTTCCTCTCCTCTTCCTCCTCTTCCA
TCTCCTCTGCTATGCTGCTTCTGTTGTTCCTGCTGCTGCGACTGCTGCCG
TTCTACTCAAAAATTAGGCGCTCCCGCCTCCTCAACTTGCATCCCTCCCT
CAATCCGATCCTCTGATCTCGCACTACGCTCCTTCCTCCCCCTTCCCTCT
TATCCTTCCCTTCGACTCTACCTCTCCCACTCTCTTCCCTTCCATTTCTT
GGTCTGCACTCTACCTCTTTCCCTCCTTCATTCCCTCTCCCTCGGCCCTC
TTCCTCTCAATCTTCCCCTCCCCTCCTCCTCTTCCACCTTCCCCCATTCC
CCCTCCATCTTACCCTTCCCCGGCCGGCCGCATCATCGGCCGCCTTCCTC
CCTTCCTCGTCCTCTCCTTCTGCTCCATTTACCATTCTGAAATCAAAAAC
ACAGGTATCCACCTTCATCCCCCTTGCTGCGCAATAATCAGCAAAGTGGT
GCCATATTTCCATTCTCCATCGACCAGCCTTCCATCCTTCCCTCGTCCGG
GACGAACATTACTTTCCCCCTTCCTTCTCTACTTCCTCCTCCCTCGGTCT
CCACCCGTCGCCAAAACCCTTGTTCGACAGCCGCTTGGACGGCAGGGAGG
GACAGACCTGCCCCTGCTCCTCCTGCAGCGTGGCGTGCTGAGAGGACGTT
AAATAGATTCTCGGCATCTGCGGCCATGATGCCTGCCATGTCGAGAGTGG
CAAGGCGAGGAAGGGAAGGAGGGAGGGGGGGGGGAAGGGAGAGGTAAGGT
GGGATCTCCTCTTTTCTTTTACCTCGGTTAAAGAACTTGTCGCCCTTGCT
GCTGCTCCTACTGCTTCTCCTGGTTCTTCTCTTCCTTCCCTTGCTGCTCT
ATATTGTCTTTGTCTCCATTCGTTTCTCCTTCCTCCCCTCCGTCTTCTCC
TCCTCCTCCTCTTATCTGAGTAGTGGTACTCGCACCACCATCACCACCAC
CACCAGCCGCAGCAGCAACGACAACACTAGTAAGTGGGTTCAGGGGTTGC
TTCTCCTTCGCCAAATTC

Coding sequence (CDS) from alignment at scaffold_29:87525..88742+

>mRNA_8883 ID=mRNA_8883|Name=jgi.p|Nanoce1779_2|604364|organism=Nannochloropsis oceanica|type=CDS|length=253bp|location=Sequence derived from alignment at scaffold_29:87525..88742+ (Nannochloropsis oceanica)
ATGCTCCTCCTCCTCCTCCTCCTACTCCCTACTCCTCCTGCTCCCCCCCC
TCCCAACACAAGCACGGTGGAGGGAAACGGACTACAAGTGTACGTACCTC
CTCCTACTAGTTCTTCTAACCCTCCTCCTCTTCTCTCCCCTCCATCTCTT
TTTTCTCCCCCTTCCTCTCCTCTTCCTCCTCTTCCATCTCCTCTGCTATG
CTGCTTCTGTTGTTCCTGCTGCTGCGACTGCTGCCGTTCTACTCAAAAAT
TAG

Synonyms

Publications