jgi.p|Nanoce1779_2|604361, mRNA_8882 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604361
Unique NamemRNA_8882
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1283
Alignment locationscaffold_29:85799..87424 -

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Properties
Property NameValue
TranscriptId604447
TrackFilteredModels2
ProteinId604361
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:85799..87424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604361gene_8882Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604361mRNA_8882-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8882CDS_8882Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8882 ID=mRNA_8882|Name=jgi.p|Nanoce1779_2|604361|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp
CGGTTGCTCCAGCGCGTGTGCACCCTCCTCTCCTTCTCCTCCTCCTCCTT
CAACGCCCCCTCCTCCCTCTCTCCCTCCCTCCCTCGCTTTCTCTCCCAGC
CGAATGACAGTGCGTGCGAAAGAGGGAGGTAAAGAGGTGGAGGTACGACC
GTTGCGCTTACTATCACTGGAGCCTCCGCTGATTTTATTTCCGGCGTCTG
TGCAGCTGGGATCGACGAAGGGGGGAAGACCGCATGGGAAGAAGGATGTG
GAGGCGACGATGACTCTGGGTGTATATAAGCAGACAGAGAAGGAGAAAGG
AGGAGAGGAATGGAAATGGAGGAATCAATGCTCTCATGTTGATGATGCCA
GCAACATCAGGAGAACCATTACCCGCCTCTTCTTCTTTTCTTCTGGCCTC
TCGTCTGCTCGACTCCCTACGTCGTCTCCTTCTCTCCCAGGCCATGCTCC
CGTCTTCCTTGATGATACCGCCGTCATTCAAGCAAAAAATGCCTCCTTTC
TTCCCTCTTCTTCATTCTTGTCCTCTTCTTTCATCCAAAAAGAAGATCTT
GGTGTTCTACGCTTTTGGGGGCAGACGAAGGAGCAGCAAGCTCAGCAGGA
GCAGCAAGTGCAGCAGAAGCAGCAACAGCAGCAGGAGGTGGCATCGCTGA
ATCTAAAGACATTAGGTGATGTGCTGCAACAGTCCTTAGTCATGCCATTG
GGGGAATTTGTGGCCATGACGGGAGGAAGGGGAGAGGGGGAAGGGGGAAA
GGAAGAGCATCGGCACCAGCACCAGGAGGAGCACGATGTTGGGCTGCTGA
CAGTGGAGGAAATCTAGACGAAGTGAGACTAAAGCTGAAGACAAATAAAG
GATGGACGATAACATACATAAGAAGAGGAAAGAAAAGGTTGGGCGAGAAT
GAGAAAAGGACACACGGTATATGCAACAACTACACAGTCAGCCAAGGTAA
GGTATCAGCGCGCCAACCTCACCCATTGTTATAAAAAATACTGACATTGC
CATTCAAGATGAAACTAAGTAAACCATGCGAAATCATCAATTTCGAGATT
TCCGATGTGGTACCCTGTCGTACTTGCGCATTCGCTCTCCATTCGTGGAC
TTGGCAGTAATCCATCTCCTGACCCATCGCCGCCGACGGAGATGTGTGAC
ATGCTGTGGATGCAGAGGAACTTGCCTAGAAAAAAAAGGAGGTCGTTCTG
GAGCTTCAAATTTTAGTGCGCTGTATATATAAGTACAATATCATGTAAAT
CGGACATTACCGCATCCACGGTACACCGAGAAA
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protein sequence of jgi.p|Nanoce1779_2|604361

>mRNA_8882-protein ID=mRNA_8882-protein|Name=jgi.p|Nanoce1779_2|604361|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MTVRAKEGGKEVEVRPLRLLSLEPPLILFPASVQLGSTKGGRPHGKKDVE
ATMTLGVYKQTEKEKGGEEWKWRNQCSHVDDASNIRRTITRLFFFSSGLS
SARLPTSSPSLPGHAPVFLDDTAVIQAKNASFLPSSSFLSSSFIQKEDLG
VLRFWGQTKEQQAQQEQQVQQKQQQQQEVASLNLKTLGDVLQQSLVMPLG
EFVAMTGGRGEGEGGKEEHRHQHQEEHDVGLLTVEEI*
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mRNA from alignment at scaffold_29:85799..87424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8882 ID=mRNA_8882|Name=jgi.p|Nanoce1779_2|604361|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_29:85799..87424- (Nannochloropsis oceanica)
CGGTTGCTCCAGCGCGTGTGCACCCTCCTCTCCTTCTCCTCCTCCTCCTT
CAACGCCCCCTCCTCCCTCTCTCCCTCCCTCCCTCGCTTTCTCTCCCAGC
CGAATGACAGTGCGTGCGGTGTGTGGTTAAAGAGAAAGAGGGAGGTAAAG
AGGTGGAGGTACGACCGTTGCGCTTACTATCACTGGAGCCTCCGCTGATT
TTATTTCCGGCGTCTGTGCAGCTGGGATCGACGAAGGGGGGAAGACCGCA
TGGGAAGAAGGATGTGGAGGCGACGATGACTCTGGGTGTATATAAGCAGA
CAGAGAAGGAGAAAGGAGGAGAGGAATGGAAATGGAGGAATCAATGGTAG
TGGGACGAGCGGGAGCCGCCCTCTGCAGGGGGCTTTTTACTTCCTCTCCC
AACGTTGCGTCCGCCCCCCCTTTTGGCATTGTGGCATGTGGATGCGGGGA
GGAGCGAGAGGGAGGGAATGAGGAAGGGGCGTGTAATAGGGAAGGGTTGT
GCGGTGGAGGAAGTGGCTGTGTCAGTGTTTTGAGTCGGGCCCGGTCGTCT
TCTTGACACTCTCCTCTTTTTTTGTGGAAAGACGAGCACGAGGAAGGGGA
GGGAGTTTCGAGGAGGAGGGATGAGAAGGAGTTAGATGCGGATGCGCGGT
TTGTGGCCACATACCTGTTGGAGCTCTCATGTTGATGATGCCAGCAACAT
CAGGAGAACCATTACCCGCCTCTTCTTCTTTTCTTCTGGCCTCTCGTCTG
CTCGACTCCCTACGTCGTCTCCTTCTCTCCCAGGCCATGCTCCCGTCTTC
CTTGATGATACCGCCGTCATTCAAGCAAAAAATGCCTCCTTTCTTCCCTC
TTCTTCATTCTTGTCCTCTTCTTTCATCCAAAAAGAAGATCTTGGTGTTC
TACGCTTTTGGGGGCAGACGAAGGAGCAGCAAGCTCAGCAGGAGCAGCAA
GTGCAGCAGAAGCAGCAACAGCAGCAGGAGGTGGCATCGCTGAATCTAAA
GACATTAGGTGATGTGCTGCAACAGTCCTTAGTCATGCCATTGGGGGAAT
TTGTGGCCATGACGGGAGGAAGGGGAGAGGGGGAAGGGGGAAAGGAAGAG
CATCGGCACCAGCACCAGGAGGAGCACGATGTTGGGCTGCTGACAGTGGA
GGAAATCTAGACGAAGTGAGACTAAAGCTGAAGACAAATAAAGGATGGAC
GATAACATACATAAGAAGAGGAAAGAAAAGGTTGGGCGAGAATGAGAAAA
GGACACACGGTATATGCAACAACTACACAGTCAGCCAAGGTAAGGTATCA
GCGCGCCAACCTCACCCATTGTTATAAAAAATACTGACATTGCCATTCAA
GATGAAACTAAGTAAACCATGCGAAATCATCAATTTCGAGATTTCCGATG
TGGTACCCTGTCGTACTTGCGCATTCGCTCTCCATTCGTGGACTTGGCAG
TAATCCATCTCCTGACCCATCGCCGCCGACGGAGATGTGTGACATGCTGT
GGATGCAGAGGAACTTGCCTAGAAAAAAAAGGAGGTCGTTCTGGAGCTTC
AAATTTTAGTGCGCTGTATATATAAGTACAATATCATGTAAATCGGACAT
TACCGCATCCACGGTACACCGAGAAA
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Coding sequence (CDS) from alignment at scaffold_29:85799..87424-

>mRNA_8882 ID=mRNA_8882|Name=jgi.p|Nanoce1779_2|604361|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_29:85799..87424- (Nannochloropsis oceanica)
CTCTCATGTTGATGATGCCAGCAACATCAGGAGAACCATTACCCGCCTCT
TCTTCTTTTCTTCTGGCCTCTCGTCTGCTCGACTCCCTACGTCGTCTCCT
TCTCTCCCAGGCCATGCTCCCGTCTTCCTTGATGATACCGCCGTCATTCA
AGCAAAAAATGCCTCCTTTCTTCCCTCTTCTTCATTCTTGTCCTCTTCTT
TCATCCAAAAAGAAGATCTTGGTGTTCTACGCTTTTGGGGGCAGACGAAG
GAGCAGCAAGCTCAGCAGGAGCAGCAAGTGCAGCAGAAGCAGCAACAGCA
GCAGGAGGTGGCATCGCTGAATCTAAAGACATTAGGTGATGTGCTGCAAC
AGTCCTTAGTCATGCCATTGGGGGAATTTGTGGCCATGACGGGAGGAAGG
GGAGAGGGGGAAGGGGGAAAGGAAGAGCATCGGCACCAGCACCAGGAGGA
GCACGATGTTGGGCTGCTGACAGTGGAGGAAATCTAGAAAGAGGGAGGTA
AAGAGGTGGAGGTACGACCGTTGCGCTTACTATCACTGGAGCCTCCGCTG
ATTTTATTTCCGGCGTCTGTGCAGCTGGGATCGACGAAGGGGGGAAGACC
GCATGGGAAGAAGGATGTGGAGGCGACGATGACTCTGGGTGTATATAAGC
AGACAGAGAAGGAGAAAGGAGGAGAGGAATGGAAATGGAGGAATCAATGA
TGACAGTGCGTGCGCTCTCATGTTGATGATGCCAGCAACATCAGGAGAAC
CATTACCCGCCTCTTCTTCTTTTCTTCTGGCCTCTCGTCTGCTCGACTCC
CTACGTCGTCTCCTTCTCTCCCAGGCCATGCTCCCGTCTTCCTTGATGAT
ACCGCCGTCATTCAAGCAAAAAATGCCTCCTTTCTTCCCTCTTCTTCATT
CTTGTCCTCTTCTTTCATCCAAAAAGAAGATCTTGGTGTTCTACGCTTTT
GGGGGCAGACGAAGGAGCAGCAAGCTCAGCAGGAGCAGCAAGTGCAGCAG
AAGCAGCAACAGCAGCAGGAGGTGGCATCGCTGAATCTAAAGACATTAGG
TGATGTGCTGCAACAGTCCTTAGTCATGCCATTGGGGGAATTTGTGGCCA
TGACGGGAGGAAGGGGAGAGGGGGAAGGGGGAAAGGAAGAGCATCGGCAC
CAGCACCAGGAGGAGCACGATGTTGGGCTGCTGACAGTGGAGGAAATCTA
GAAAGAGGGAGGTAAAGAGGTGGAGGTACGACCGTTGCGCTTACTATCAC
TGGAGCCTCCGCTGATTTTATTTCCGGCGTCTGTGCAGCTGGGATCGACG
AAGGGGGGAAGACCGCATGGGAAGAAGGATGTGGAGGCGACGATGACTCT
GGGTGTATATAAGCAGACAGAGAAGGAGAAAGGAGGAGAGGAATGGAAAT
GGAGGAATCAATGATGACAGTGCGTGCGCTCTCATGTTGATGATGCCAGC
AACATCAGGAGAACCATTACCCGCCTCTTCTTCTTTTCTTCTGGCCTCTC
GTCTGCTCGACTCCCTACGTCGTCTCCTTCTCTCCCAGGCCATGCTCCCG
TCTTCCTTGATGATACCGCCGTCATTCAAGCAAAAAATGCCTCCTTTCTT
CCCTCTTCTTCATTCTTGTCCTCTTCTTTCATCCAAAAAGAAGATCTTGG
TGTTCTACGCTTTTGGGGGCAGACGAAGGAGCAGCAAGCTCAGCAGGAGC
AGCAAGTGCAGCAGAAGCAGCAACAGCAGCAGGAGGTGGCATCGCTGAAT
CTAAAGACATTAGGTGATGTGCTGCAACAGTCCTTAGTCATGCCATTGGG
GGAATTTGTGGCCATGACGGGAGGAAGGGGAGAGGGGGAAGGGGGAAAGG
AAGAGCATCGGCACCAGCACCAGGAGGAGCACGATGTTGGGCTGCTGACA
GTGGAGGAAATCTAGAAAGAGGGAGGTAAAGAGGTGGAGGTACGACCGTT
GCGCTTACTATCACTGGAGCCTCCGCTGATTTTATTTCCGGCGTCTGTGC
AGCTGGGATCGACGAAGGGGGGAAGACCGCATGGGAAGAAGGATGTGGAG
GCGACGATGACTCTGGGTGTATATAAGCAGACAGAGAAGGAGAAAGGAGG
AGAGGAATGGAAATGGAGGAATCAATGATGACAGTGCGTGCG
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Synonyms
Publications