jgi.p|Nanoce1779_2|533055, mRNA_8881 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533055
Unique Name	mRNA_8881
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1815
Alignment location	scaffold_29:83540..85383 -

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Properties


Property Name	Value
TranscriptId	533141
Track	FilteredModels2
ProteinId	533055

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:83540..85383 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533055	gene_8881	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533055	mRNA_8881-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8881	CDS_8881	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:83540..85383-
coding sequence from alignment at scaffold_29:83540..85383-

mRNA sequence

>mRNA_8881 ID=mRNA_8881|Name=jgi.p|Nanoce1779_2|533055|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ATGTCCTTGCCCTCCTCCTCCACGCGGGCACGTCCTACCACTACCGTCCT
TCGTCTTCTTCTTCTCTTCGTGGTCTCTCCTTCCCTTCCCAACACTCATG
CAAATAGCACCACCAGCATTCGCCTCGGCCGTCGCGCCCTCCAAACCTCT
TCTACCTCCCGCCGCTCCTCTTCCCTCTCCTACCCCTATCCATCCTCTCC
TTTCTTCCCTTCCCGCATCAATCCGAACCCCGGCACCGATCGCTGCACTA
CCATGATTGTCGGTCCAAAAGCTTCAATGGACGGGAGCACGATGACAACC
CACACTGCTGACTGCGCTGAATGCGACTTCCGCCTCGCCAAGGTCCCTGC
CCGTGACTGGCCTGCTGGCTCCCAGCGTCCAATCTACCTGTTTGCTTCCG
CCTATCCTCGGCGCGTACAGGAGGGGAGAAGCGCAACATGGGAACCGTCA
AATCTGGACGACTCGCTTCCCCAGGCCCCCGTGTGGAAAAAAAAAGGGTT
CAGTAAGATTATTGGGTACATTCCCCAGGTAAACCACACGTACGCCTTAA
TCGAGGGCCTGTATGCGATCGAAAATGAGCACCAGGTTGCCATCGGGGAA
AGTACGTGCAGTGGCCGGGGGGGGAAGGCCTTGATGGAGATTGGGGAGTT
GAGCTCGATTGCTCTGGAGAGATGCATGACAGCGAGATGCGCCATTGAGA
CCATGGGTGGCTTGGCGGAAGAGTACGGTTACTATGGTGCCGAATGGGAG
GGGCAGATGGACGACATCATTGCAGAAGCGGGGGAGGCTTTGGTGGTGGG
GGATCCGAAGGAGGCGTGGATTTTTCACATATTGCCCGATGACACGGGGA
CGAGTGCCGTGTGGGCCGCGCAGCGGGTGCCGGACGGCCATATCTCTATA
GTGGCCAATCAGTTTATCATTAGGGGGGTGAAAAAAGACAAGAAGGACGA
ATTTTTGTTTTCGTCCAATTTGTGGGAGGTGGCGGAGAGGAATAACTTGT
GGGAGGCGGAGGATGGGGAGCTGGATTTTTTGAAGGTATACGGGTACATG
CGTGTGCATGCTGCTTACGCCACACGGAGGGTGTGGCGGGTGTTCACATT
AGCTGCACCTTCGCTCCTTCCATCCCTGCCCTCCTCCGTGGATGATTTTG
GGGATGGTTACCCGTTCTCGGTTGAGCCGGACAAGAAGCTAAATCCGGCT
GATTTGATGCGGTTTCAGCGTGATCATTATGAGGGCACCGAGTTCGATTT
AACGCAAGGAATTGCCGCGGGTCCGTACGGGGATCCGAATCGTTATGACC
CAAGTGCGAATAAAGGAGAGAATGTGACGTTGCTACAGGCACAGGGAGGT
TTTTATGAGAGGAGCATCTCTTTGTTCCGCACCAGCTACTCGACTGTGAC
GCAGTCGAGGGGAGCATTGCCTAATCTCGTAGGTGGGAGGGTTTGGATTT
GTCAGTACATGCCAGCGATGAGTACCTACACGCCATTGTATGTGGGGGTA
TCTTCCCTTCCTCCCTCCTACACGCGCGGGAGTCTGTTTAAGTATGAAAG
AGGGAGCAATTACTGGTCTGCGGCCTCGGTAGGAAATTGGGCGACTCGAT
TTTATAGGTATATCAGACAGGATGTGGAGGAGTCCCAGAGGACGATTGAA
GGGCCTTTAATGCTCCAGGCGGACATGACGGATAAAGCAGCCATGGAAAA
TTTGGCGACGGGGGATATGAAGGGGGCAGAGGAGGTGCTGAAAGGCCAGG
CGGATTTAGCAGCGAAGGTTGCGTTGGACACGTGGAATGGTAAGCTTTAT
TATCCTAATTATTAA

protein sequence of jgi.p|Nanoce1779_2|533055

>mRNA_8881-protein ID=mRNA_8881-protein|Name=jgi.p|Nanoce1779_2|533055|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MSLPSSSTRARPTTTVLRLLLLFVVSPSLPNTHANSTTSIRLGRRALQTS
STSRRSSSLSYPYPSSPFFPSRINPNPGTDRCTTMIVGPKASMDGSTMTT
HTADCAECDFRLAKVPARDWPAGSQRPIYLFASAYPRRVQEGRSATWEPS
NLDDSLPQAPVWKKKGFSKIIGYIPQVNHTYALIEGLYAIENEHQVAIGE
STCSGRGGKALMEIGELSSIALERCMTARCAIETMGGLAEEYGYYGAEWE
GQMDDIIAEAGEALVVGDPKEAWIFHILPDDTGTSAVWAAQRVPDGHISI
VANQFIIRGVKKDKKDEFLFSSNLWEVAERNNLWEAEDGELDFLKVYGYM
RVHAAYATRRVWRVFTLAAPSLLPSLPSSVDDFGDGYPFSVEPDKKLNPA
DLMRFQRDHYEGTEFDLTQGIAAGPYGDPNRYDPSANKGENVTLLQAQGG
FYERSISLFRTSYSTVTQSRGALPNLVGGRVWICQYMPAMSTYTPLYVGV
SSLPPSYTRGSLFKYERGSNYWSAASVGNWATRFYRYIRQDVEESQRTIE
GPLMLQADMTDKAAMENLATGDMKGAEEVLKGQADLAAKVALDTWNGKLY
YPNY*

mRNA from alignment at scaffold_29:83540..85383-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8881 ID=mRNA_8881|Name=jgi.p|Nanoce1779_2|533055|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp|location=Sequence derived from alignment at scaffold_29:83540..85383- (Nannochloropsis oceanica)
ATGTCCTTGCCCTCCTCCTCCACGCGGGCACGTCCTACCACTACCGTCCT
TCGTCTTCTTCTTCTCTTCGTGGTCTCTCCTTCCCTTCCCAACACTCATG
CAAATAGCACCACCAGCATTCGCCTCGGCCGTCGCGCCCTCCAAACCTCT
TCTACCTCCCGCCGCTCCTCTTCCCTCTCCTACCCCTATCCATCCTCTCC
TTTCTTCCCTTCCCGCATCAATCCGAACCCCGGCACCGATCGCTGCACTA
CCATGATTGTCGGTCCAAAAGCTTCAATGGACGGGAGCACGATGACAACC
CACACTGCTGACTGCGCTGAATGCGACTTCCGCCTCGCCAAGGTCCCTGC
CCGTGACTGGCCTGCTGGCTCCCAGCGTCCAATCTACCTGTTTGCTTCCG
CCTATCCTCGGCGCGTACAGGAGGGGAGAAGCGCAACATGGGAACCGTCA
AATCTGGACGACTCGCTTCCCCAGGCCCCCGTGTGGAAAAAAAAAGGGTT
CAGTAAGATTATTGGGTACATTCCCCAGGTAAACCACACGTACGCCTTAA
TCGAGGGCCTGTATGCGATCGAAAATGAGCACCAGGTTGCCATCGGGGAA
AGTACGTGCAGTGGCCGTTTTTGGACGAAGCCTAGGGGAGTGGAGGGGGG
GGGAAGGCCTTGATGGAGATTGGGGAGTTGAGCTCGATTGCTCTGGAGAG
ATGCATGACAGCGAGATGCGCCATTGAGACCATGGGTGGCTTGGCGGAAG
AGTACGGTTACTATGGTGCCGAATGGGAGGGGCAGATGGACGACATCATT
GCAGAAGCGGGGGAGGCTTTGGTGGTGGGGGATCCGAAGGAGGCGTGGAT
TTTTCACATATTGCCCGATGACACGGGGACGAGTGCCGTGTGGGCCGCGC
AGCGGGTGCCGGACGGCCATATCTCTATAGTGGCCAATCAGTTTATCATT
AGGGGGGTGAAAAAAGACAAGAAGGACGAATTTTTGTTTTCGTCCAATTT
GTGGGAGGTGGCGGAGAGGAATAACTTGTGGGAGGCGGAGGATGGGGAGC
TGGATTTTTTGAAGGTATACGGGTACATGCGTGTGCATGCTGCTTACGCC
ACACGGAGGGTGTGGCGGGTGTTCACATTAGCTGCACCTTCGCTCCTTCC
ATCCCTGCCCTCCTCCGTGGATGATTTTGGGGATGGTTACCCGTTCTCGG
TTGAGCCGGACAAGAAGCTAAATCCGGCTGATTTGATGCGGTTTCAGCGT
GATCATTATGAGGGCACCGAGTTCGATTTAACGCAAGGAATTGCCGCGGG
TCCGTACGGGGATCCGAATCGTTATGACCCAAGTGCGAATAAAGGAGAGA
ATGTGACGTTGCTACAGGCACAGGGAGGTTTTTATGAGAGGAGCATCTCT
TTGTTCCGCACCAGCTACTCGACTGTGACGCAGTCGAGGGGAGCATTGCC
TAATCTCGTAGGTGGGAGGGTTTGGATTTGTCAGTACATGCCAGCGATGA
GTACCTACACGCCATTGTATGTGGGGGTATCTTCCCTTCCTCCCTCCTAC
ACGCGCGGGAGTCTGTTTAAGTATGAAAGAGGGAGCAATTACTGGTCTGC
GGCCTCGGTAGGAAATTGGGCGACTCGATTTTATAGGTATATCAGACAGG
ATGTGGAGGAGTCCCAGAGGACGATTGAAGGGCCTTTAATGCTCCAGGCG
GACATGACGGATAAAGCAGCCATGGAAAATTTGGCGACGGGGGATATGAA
GGGGGCAGAGGAGGTGCTGAAAGGCCAGGCGGATTTAGCAGCGAAGGTTG
CGTTGGACACGTGGAATGGTAAGCTTTATTATCCTAATTATTAA

Coding sequence (CDS) from alignment at scaffold_29:83540..85383-

>mRNA_8881 ID=mRNA_8881|Name=jgi.p|Nanoce1779_2|533055|organism=Nannochloropsis oceanica|type=CDS|length=3630bp|location=Sequence derived from alignment at scaffold_29:83540..85383- (Nannochloropsis oceanica)
GGGGGGGGAAGGCCTTGATGGAGATTGGGGAGTTGAGCTCGATTGCTCTG
GAGAGATGCATGACAGCGAGATGCGCCATTGAGACCATGGGTGGCTTGGC
GGAAGAGTACGGTTACTATGGTGCCGAATGGGAGGGGCAGATGGACGACA
TCATTGCAGAAGCGGGGGAGGCTTTGGTGGTGGGGGATCCGAAGGAGGCG
TGGATTTTTCACATATTGCCCGATGACACGGGGACGAGTGCCGTGTGGGC
CGCGCAGCGGGTGCCGGACGGCCATATCTCTATAGTGGCCAATCAGTTTA
TCATTAGGGGGGTGAAAAAAGACAAGAAGGACGAATTTTTGTTTTCGTCC
AATTTGTGGGAGGTGGCGGAGAGGAATAACTTGTGGGAGGCGGAGGATGG
GGAGCTGGATTTTTTGAAGGTATACGGGTACATGCGTGTGCATGCTGCTT
ACGCCACACGGAGGGTGTGGCGGGTGTTCACATTAGCTGCACCTTCGCTC
CTTCCATCCCTGCCCTCCTCCGTGGATGATTTTGGGGATGGTTACCCGTT
CTCGGTTGAGCCGGACAAGAAGCTAAATCCGGCTGATTTGATGCGGTTTC
AGCGTGATCATTATGAGGGCACCGAGTTCGATTTAACGCAAGGAATTGCC
GCGGGTCCGTACGGGGATCCGAATCGTTATGACCCAAGTGCGAATAAAGG
AGAGAATGTGACGTTGCTACAGGCACAGGGAGGTTTTTATGAGAGGAGCA
TCTCTTTGTTCCGCACCAGCTACTCGACTGTGACGCAGTCGAGGGGAGCA
TTGCCTAATCTCGTAGGTGGGAGGGTTTGGATTTGTCAGTACATGCCAGC
GATGAGTACCTACACGCCATTGTATGTGGGGGTATCTTCCCTTCCTCCCT
CCTACACGCGCGGGAGTCTGTTTAAGTATGAAAGAGGGAGCAATTACTGG
TCTGCGGCCTCGGTAGGAAATTGGGCGACTCGATTTTATAGGTATATCAG
ACAGGATGTGGAGGAGTCCCAGAGGACGATTGAAGGGCCTTTAATGCTCC
AGGCGGACATGACGGATAAAGCAGCCATGGAAAATTTGGCGACGGGGGAT
ATGAAGGGGGCAGAGGAGGTGCTGAAAGGCCAGGCGGATTTAGCAGCGAA
GGTTGCGTTGGACACGTGGAATGGTAAGCTTTATTATCCTAATTATTAAA
TGTCCTTGCCCTCCTCCTCCACGCGGGCACGTCCTACCACTACCGTCCTT
CGTCTTCTTCTTCTCTTCGTGGTCTCTCCTTCCCTTCCCAACACTCATGC
AAATAGCACCACCAGCATTCGCCTCGGCCGTCGCGCCCTCCAAACCTCTT
CTACCTCCCGCCGCTCCTCTTCCCTCTCCTACCCCTATCCATCCTCTCCT
TTCTTCCCTTCCCGCATCAATCCGAACCCCGGCACCGATCGCTGCACTAC
CATGATTGTCGGTCCAAAAGCTTCAATGGACGGGAGCACGATGACAACCC
ACACTGCTGACTGCGCTGAATGCGACTTCCGCCTCGCCAAGGTCCCTGCC
CGTGACTGGCCTGCTGGCTCCCAGCGTCCAATCTACCTGTTTGCTTCCGC
CTATCCTCGGCGCGTACAGGAGGGGAGAAGCGCAACATGGGAACCGTCAA
ATCTGGACGACTCGCTTCCCCAGGCCCCCGTGTGGAAAAAAAAAGGGTTC
AGTAAGATTATTGGGTACATTCCCCAGGTAAACCACACGTACGCCTTAAT
CGAGGGCCTGTATGCGATCGAAAATGAGCACCAGGTTGCCATCGGGGAAA
GTACGTGCAGTGGCCGGGGGGGGAAGGCCTTGATGGAGATTGGGGAGTTG
AGCTCGATTGCTCTGGAGAGATGCATGACAGCGAGATGCGCCATTGAGAC
CATGGGTGGCTTGGCGGAAGAGTACGGTTACTATGGTGCCGAATGGGAGG
GGCAGATGGACGACATCATTGCAGAAGCGGGGGAGGCTTTGGTGGTGGGG
GATCCGAAGGAGGCGTGGATTTTTCACATATTGCCCGATGACACGGGGAC
GAGTGCCGTGTGGGCCGCGCAGCGGGTGCCGGACGGCCATATCTCTATAG
TGGCCAATCAGTTTATCATTAGGGGGGTGAAAAAAGACAAGAAGGACGAA
TTTTTGTTTTCGTCCAATTTGTGGGAGGTGGCGGAGAGGAATAACTTGTG
GGAGGCGGAGGATGGGGAGCTGGATTTTTTGAAGGTATACGGGTACATGC
GTGTGCATGCTGCTTACGCCACACGGAGGGTGTGGCGGGTGTTCACATTA
GCTGCACCTTCGCTCCTTCCATCCCTGCCCTCCTCCGTGGATGATTTTGG
GGATGGTTACCCGTTCTCGGTTGAGCCGGACAAGAAGCTAAATCCGGCTG
ATTTGATGCGGTTTCAGCGTGATCATTATGAGGGCACCGAGTTCGATTTA
ACGCAAGGAATTGCCGCGGGTCCGTACGGGGATCCGAATCGTTATGACCC
AAGTGCGAATAAAGGAGAGAATGTGACGTTGCTACAGGCACAGGGAGGTT
TTTATGAGAGGAGCATCTCTTTGTTCCGCACCAGCTACTCGACTGTGACG
CAGTCGAGGGGAGCATTGCCTAATCTCGTAGGTGGGAGGGTTTGGATTTG
TCAGTACATGCCAGCGATGAGTACCTACACGCCATTGTATGTGGGGGTAT
CTTCCCTTCCTCCCTCCTACACGCGCGGGAGTCTGTTTAAGTATGAAAGA
GGGAGCAATTACTGGTCTGCGGCCTCGGTAGGAAATTGGGCGACTCGATT
TTATAGGTATATCAGACAGGATGTGGAGGAGTCCCAGAGGACGATTGAAG
GGCCTTTAATGCTCCAGGCGGACATGACGGATAAAGCAGCCATGGAAAAT
TTGGCGACGGGGGATATGAAGGGGGCAGAGGAGGTGCTGAAAGGCCAGGC
GGATTTAGCAGCGAAGGTTGCGTTGGACACGTGGAATGGTAAGCTTTATT
ATCCTAATTATTAAATGTCCTTGCCCTCCTCCTCCACGCGGGCACGTCCT
ACCACTACCGTCCTTCGTCTTCTTCTTCTCTTCGTGGTCTCTCCTTCCCT
TCCCAACACTCATGCAAATAGCACCACCAGCATTCGCCTCGGCCGTCGCG
CCCTCCAAACCTCTTCTACCTCCCGCCGCTCCTCTTCCCTCTCCTACCCC
TATCCATCCTCTCCTTTCTTCCCTTCCCGCATCAATCCGAACCCCGGCAC
CGATCGCTGCACTACCATGATTGTCGGTCCAAAAGCTTCAATGGACGGGA
GCACGATGACAACCCACACTGCTGACTGCGCTGAATGCGACTTCCGCCTC
GCCAAGGTCCCTGCCCGTGACTGGCCTGCTGGCTCCCAGCGTCCAATCTA
CCTGTTTGCTTCCGCCTATCCTCGGCGCGTACAGGAGGGGAGAAGCGCAA
CATGGGAACCGTCAAATCTGGACGACTCGCTTCCCCAGGCCCCCGTGTGG
AAAAAAAAAGGGTTCAGTAAGATTATTGGGTACATTCCCCAGGTAAACCA
CACGTACGCCTTAATCGAGGGCCTGTATGCGATCGAAAATGAGCACCAGG
TTGCCATCGGGGAAAGTACGTGCAGTGGCC

Synonyms

Publications