jgi.p|Nanoce1779_2|604351, mRNA_8879 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604351
Unique NamemRNA_8879
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length711
Alignment locationscaffold_29:77728..78743 -

Link to JBrowse

Properties
Property NameValue
TranscriptId604437
TrackFilteredModels2
ProteinId604351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:77728..78743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604351gene_8879Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604351mRNA_8879-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8879CDS_8879Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8879 ID=mRNA_8879|Name=jgi.p|Nanoce1779_2|604351|organism=Nannochloropsis oceanica|type=mRNA|length=711bp
CAGCAGCAGCAGCAGCAGCAGACCAGCAGCAGCAAGCAGCAGCAGGAGCA
GCAGCAGCAGCAGCAGCAGGAGCAGTAGCAACAGCAGCGACAGCTTGGTT
AAGGGGGGACTTGGGCATCACTTGGGCTCTGCTTCAGGAGCAGTAGGAGT
GGGGGGGATTGCTATCCATGCCTCTCCATCTATCTCTCCCTCTCCTGCCG
ACTACCTCCTGGGCAATACCACCCCTACGGGCAGCCGCACCCGTGGGGCG
GAAGGGAGTAGTCCTGTCCTTGAGGGGCCTTTTGGCGCAAGCTTATTTGG
GGGCTTTCACCCAACTTCATCTCCGGAGCAGCAGCGCCAGAAGCAGGAGC
AGATTAATAACAAAGGCAATGAGAGGAGATCGGCGTCTTTGTCCCCTCCT
CCTCCTCTGTCGGTGCATGATGCTGTGAGCGTGTTTGGTTCCACGGGAAA
GTAGCAGCAGCAGGCTCTCACTCAACGGCGGCGCGAACCACAACAGCGGC
AGCAGCACCAGTAAAGGAGGGACCGGGGGAGGGATGGATGAGCGTGGACT
GTTCAATTTCCAAAACATGGAATATGAGCTTGTGGACTTGGCTGAAGCGA
CGGGATATGGTTCCAACAACAACAATAGCAGCAGCAACAGCAGCAACAAC
AACAGCGGCAGTAGCAACAACAATAGCAACACCAGCACCAGCACAACCAG
CACCACCAGCA
back to top

protein sequence of jgi.p|Nanoce1779_2|604351

>mRNA_8879-protein ID=mRNA_8879-protein|Name=jgi.p|Nanoce1779_2|604351|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MPLHLSLPLLPTTSWAIPPLRAAAPVGRKGVVLSLRGLLAQAYLGAFTQL
HLRSSSARSRSRLITKAMRGDRRLCPLLLLCRCMML*
back to top

mRNA from alignment at scaffold_29:77728..78743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8879 ID=mRNA_8879|Name=jgi.p|Nanoce1779_2|604351|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp|location=Sequence derived from alignment at scaffold_29:77728..78743- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCCGCAACGGGAGGAGGAGGAGGGGGA
AGAGGAGGAGGAACAGCAGCAAGGTGGTAGCATTAGCGGTGACCGTGATC
ACTCCCTATCCCCTGAACACCGCCCGCAGCCCAGCAGTAGCAGCAGCAAC
AGCAATAGCCCCACCCTCTCCTCCCTCCTCTCCAAGCCCGCTAGCGCGGC
GCCAGGCGGACCACTAGCAGGGAGCACCTCTCCCGCAGGCACCTCTCCGC
AGACCACCACCTCGGCCGCTTCCTCCCTTTACGGATCCAACTCTGGCTCC
GGGTCTGATTCTGACCGGGAGGGGAACAGCAACAGCAGGAGCAGCAGCAG
GAGCAGCAGCAGCAGCAGCAGCAGGAGCAGTAGCAACAGCAGCGACAGCT
TGGTTAAGGGGGGACTTGGGCATCACTTGGGCTCTGCTTCAGGAGCAGTA
GGAGTGGGGGGGATTGCTATCCATGCCTCTCCATCTATCTCTCCCTCTCC
TGCCGACTACCTCCTGGGCAATACCACCCCTACGGGCAGCCGCACCCGTG
GGGCGGAAGGGAGTAGTCCTGTCCTTGAGGGGCCTTTTGGCGCAAGCTTA
TTTGGGGGCTTTCACCCAACTTCATCTCCGGAGCAGCAGCGCCAGAAGCA
GGAGCAGATTAATAACAAAGGCAATGAGAGGAGATCGGCGTCTTTGTCCC
CTCCTCCTCCTCTGTCGGTGCATGATGCTGTGAGCGTGTTTGGTTCCACG
GGAAAGTAGCAGCAGCAGGCTCTCACTCAACGGCGGCGCGAACCACAACA
GCGGCAGCAGCACCAGTAAAGGAGGGACCGGGGGAGGGATGGATGAGCGT
GGACTGTTCAATTTCCAAAACATGGAATATGAGCTTGTGGACTTGGCTGA
AGCGACGGGATATGGTTCCAACAACAACAATAGCAGCAGCAACAGCAGCA
ACAACAACAGCGGCAGTAGCAACAACAATAGCAACACCAGCACCAGCACA
ACCAGCACCACCAGCA
back to top

Coding sequence (CDS) from alignment at scaffold_29:77728..78743-

>mRNA_8879 ID=mRNA_8879|Name=jgi.p|Nanoce1779_2|604351|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_29:77728..78743- (Nannochloropsis oceanica)
ATGCCTCTCCATCTATCTCTCCCTCTCCTGCCGACTACCTCCTGGGCAAT
ACCACCCCTACGGGCAGCCGCACCCGTGGGGCGGAAGGGAGTAGTCCTGT
CCTTGAGGGGCCTTTTGGCGCAAGCTTATTTGGGGGCTTTCACCCAACTT
CATCTCCGGAGCAGCAGCGCCAGAAGCAGGAGCAGATTAATAACAAAGGC
AATGAGAGGAGATCGGCGTCTTTGTCCCCTCCTCCTCCTCTGTCGGTGCA
TGATGCTGTGA
back to top
Synonyms
Publications