jgi.p|Nanoce1779_2|604347, mRNA_8876 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604347
Unique Name	mRNA_8876
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2219
Alignment location	scaffold_29:72882..75100 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604433
Track	FilteredModels2
ProteinId	604347

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:72882..75100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604347	gene_8876	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604347	mRNA_8876-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8876	CDS_8876	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:72882..75100+
coding sequence from alignment at scaffold_29:72882..75100+

mRNA sequence

>mRNA_8876 ID=mRNA_8876|Name=jgi.p|Nanoce1779_2|604347|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp
GAACATCTATCACCACATACTCCATCATCATGTTATTAGACCATTTGGTG
ATTTGTGTGCGGTAACGCTCATACAACTTTTCCATCGAGCCTTTGACAGA
GTCCCGGTCAAACACACACCTGGGCCAGCACTTGAATTGGAACCTTGAAC
AAATATTTAAGAATGACTGCCATTTACGGGTGGGCAGTTAAACACCCCCC
TGATGCAAATTAGAAAGAGAGGAAAATATCTGACATAAGAAAGCTATGTT
GTTGAGATAGGCAGTCGTCATGATGGTCTTCGTCTTTATTATCGTCATGT
CGTTCTCATCCGCACGCAAGGCTACTAGAATACCTCGCTTTCCAACCAGG
GAAAATAAATAAACAAGACGAAGACACTAGCCCGCTTCGTTCTCTACTGC
TGCTACTGCTACTAATGCCTCTTTTGAACGGTGGGCGGTCATGGTCGTCT
CCATTGCCGTTATACCTTTCCTCATTCTATCACAAGTCTATGATTAAAAC
AAGTAAGGGGGGTTGTTCGCTTGCCGAAACTCATATTCTTGTGCTCTCTG
ACTCTCTTAGTTGCATCATATCTCGCTCTCTTTTGTTTCTCATTCTTTTC
TCTTTTATTAATATGACAGCTCTCTTTGGGTGTGTATGGTAATGGTGGTG
AAGATGGTAATGAATGATGGCAAATGGGTGGAGGAGGGGGGTCTCCCTCC
CTCCCTTCCTCCCTCCTTCCTTCCTTCATTCCCACCCTCACCCCTCTTCC
CAATCCTCAACTCGTGCACATATACAATACTACTATTTATTATCATTGTT
GCGAATCTCTCTTCTTCTATGTCTCCCATTCGATTCCTTCATGCTCTTTC
TCCCCCTCGTTTATCGCCATGTAACGCACATCCCACATACGCACGCGAAT
GCTCACACACCATGCAGTCTTCATCAATTTCCTTTCATTACCCTGTGCTT
CTCAGCGCCAAGGGACAGGGGGGAGGGAAGAAAAAATGCAATTTATTTTT
CGCTACTGCTACTGATATAATACGGAATTTGTGTGGATACGAGATTTTTT
TCAAAACAATCACGGAAAGGGGTCAGACAAACGCGTGTGAGGCCGGCAAC
AGCGCCTCACACATTCTTGACCCTCTTCTTCTTCCTCCTTGACCGACAGA
CCGCTGTTTTTACTGACTGGTTGCTTGGTGGTGCCCCTCTTTCCATACGC
AAGAAAGTCCCCCTCACAGATATCATATCCCCTCCACAGGTGTTGGTTTA
CACATACTAGGAGACAGGCAAGGGCAATCAGGAGGCAGATAGCAAAGAGG
GGAATGAGATGAGGTGGCCCCTCCCATCTTAATTTCACTATTCCCCCAGT
CCTTCGTCGTCCTCCTTTCTGCTACCGCTCTCTCCTCCCCTTTCCGTAGC
TTTTCTACTATATAAATTTCCTGTGTCTGGGCCCCATTAATCCCTCTTGA
TTCAGTCGTACTTATTTATTTGAATGGTGGCTATGTGGACTTGTCTTCCT
AAAAATAAATCTCTCTTTCATCTTTCACATATACCGTGCACCCTTTGGCT
TTTTGTTCCTGCCTATCTCATTGACTCTCTCCCATTCCTTTTTTTTCTCT
CACATGCTCGGACAATTCTCTCATACACTCTCTCTTTGTTCCTTTTGATC
CTGCGCAATCTTCCCTTTACGAAACAAAAATCACGCAGGACACCATCACA
AGAAGAGTAAGAAGAAATCTCATTTCCTCTCCCTTGTTCATATTCCGTCT
TGCTACTATTTGTTGCTGTTGACTGCTGCTGCTGACTGCTGCTGCTGCTG
CTGCTCGTCATCACGGCAACTGTCCCTCTCATTTCCTCCTTTCTTTCCGC
ACTTCCTAAAGTAAATACAAAGCTTTCCCAAAAAGTTGTCCTTCCCTCTT
TCCCTCTTCCCTCCATACCTTCATACCCTTAACGAAGCCCACAGTACTGC
CCTCCAAACTGCTGCTGCTGCTGCTGCTGCTGGTGATGGGGGTGGAAACC
AAAGGGTTGATGCAGGGGGTGATGCTGCTGCTGCTGCTGCTGGTGGTGGT
GGTGGAGCGACGACAGCGGTTGCTGCAGCTGCTGCTGATGATGGTGCTGT
TGTTGGTGCTGCAAGTGCTGACGCTGTCCACCATATCCCCCCCCTCCATC
CATCTGATGCCCAAAGTGAGGATTTTGCCCTCCCCCTCCTCCATACCCTC
CCCCGCCCATCATCATCCC

protein sequence of jgi.p|Nanoce1779_2|604347

>mRNA_8876-protein ID=mRNA_8876-protein|Name=jgi.p|Nanoce1779_2|604347|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MVMVVKMVMNDGKWVEEGGLPPSLPPSFLPSFPPSPLFPILNSCTYTILL
FIIIVANLSSSMSPIRFLHALSPPRLSPCNAHPTYARECSHTMQSSSISF
HYPVLLSAKGQGGGKKKCNLFFATATDIIRNLCGYEIFFKTITERGQTNA
CEAGNSASHILDPLLLPP*

mRNA from alignment at scaffold_29:72882..75100+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8876 ID=mRNA_8876|Name=jgi.p|Nanoce1779_2|604347|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp|location=Sequence derived from alignment at scaffold_29:72882..75100+ (Nannochloropsis oceanica)
GAACATCTATCACCACATACTCCATCATCATGTTATTAGACCATTTGGTG
ATTTGTGTGCGGTAACGCTCATACAACTTTTCCATCGAGCCTTTGACAGA
GTCCCGGTCAAACACACACCTGGGCCAGCACTTGAATTGGAACCTTGAAC
AAATATTTAAGAATGACTGCCATTTACGGGTGGGCAGTTAAACACCCCCC
TGATGCAAATTAGAAAGAGAGGAAAATATCTGACATAAGAAAGCTATGTT
GTTGAGATAGGCAGTCGTCATGATGGTCTTCGTCTTTATTATCGTCATGT
CGTTCTCATCCGCACGCAAGGCTACTAGAATACCTCGCTTTCCAACCAGG
GAAAATAAATAAACAAGACGAAGACACTAGCCCGCTTCGTTCTCTACTGC
TGCTACTGCTACTAATGCCTCTTTTGAACGGTGGGCGGTCATGGTCGTCT
CCATTGCCGTTATACCTTTCCTCATTCTATCACAAGTCTATGATTAAAAC
AAGTAAGGGGGGTTGTTCGCTTGCCGAAACTCATATTCTTGTGCTCTCTG
ACTCTCTTAGTTGCATCATATCTCGCTCTCTTTTGTTTCTCATTCTTTTC
TCTTTTATTAATATGACAGCTCTCTTTGGGTGTGTATGGTAATGGTGGTG
AAGATGGTAATGAATGATGGCAAATGGGTGGAGGAGGGGGGTCTCCCTCC
CTCCCTTCCTCCCTCCTTCCTTCCTTCATTCCCACCCTCACCCCTCTTCC
CAATCCTCAACTCGTGCACATATACAATACTACTATTTATTATCATTGTT
GCGAATCTCTCTTCTTCTATGTCTCCCATTCGATTCCTTCATGCTCTTTC
TCCCCCTCGTTTATCGCCATGTAACGCACATCCCACATACGCACGCGAAT
GCTCACACACCATGCAGTCTTCATCAATTTCCTTTCATTACCCTGTGCTT
CTCAGCGCCAAGGGACAGGGGGGAGGGAAGAAAAAATGCAATTTATTTTT
CGCTACTGCTACTGATATAATACGGAATTTGTGTGGATACGAGATTTTTT
TCAAAACAATCACGGAAAGGGGTCAGACAAACGCGTGTGAGGCCGGCAAC
AGCGCCTCACACATTCTTGACCCTCTTCTTCTTCCTCCTTGACCGACAGA
CCGCTGTTTTTACTGACTGGTTGCTTGGTGGTGCCCCTCTTTCCATACGC
AAGAAAGTCCCCCTCACAGATATCATATCCCCTCCACAGGTGTTGGTTTA
CACATACTAGGAGACAGGCAAGGGCAATCAGGAGGCAGATAGCAAAGAGG
GGAATGAGATGAGGTGGCCCCTCCCATCTTAATTTCACTATTCCCCCAGT
CCTTCGTCGTCCTCCTTTCTGCTACCGCTCTCTCCTCCCCTTTCCGTAGC
TTTTCTACTATATAAATTTCCTGTGTCTGGGCCCCATTAATCCCTCTTGA
TTCAGTCGTACTTATTTATTTGAATGGTGGCTATGTGGACTTGTCTTCCT
AAAAATAAATCTCTCTTTCATCTTTCACATATACCGTGCACCCTTTGGCT
TTTTGTTCCTGCCTATCTCATTGACTCTCTCCCATTCCTTTTTTTTCTCT
CACATGCTCGGACAATTCTCTCATACACTCTCTCTTTGTTCCTTTTGATC
CTGCGCAATCTTCCCTTTACGAAACAAAAATCACGCAGGACACCATCACA
AGAAGAGTAAGAAGAAATCTCATTTCCTCTCCCTTGTTCATATTCCGTCT
TGCTACTATTTGTTGCTGTTGACTGCTGCTGCTGACTGCTGCTGCTGCTG
CTGCTCGTCATCACGGCAACTGTCCCTCTCATTTCCTCCTTTCTTTCCGC
ACTTCCTAAAGTAAATACAAAGCTTTCCCAAAAAGTTGTCCTTCCCTCTT
TCCCTCTTCCCTCCATACCTTCATACCCTTAACGAAGCCCACAGTACTGC
CCTCCAAACTGCTGCTGCTGCTGCTGCTGCTGGTGATGGGGGTGGAAACC
AAAGGGTTGATGCAGGGGGTGATGCTGCTGCTGCTGCTGCTGGTGGTGGT
GGTGGAGCGACGACAGCGGTTGCTGCAGCTGCTGCTGATGATGGTGCTGT
TGTTGGTGCTGCAAGTGCTGACGCTGTCCACCATATCCCCCCCCTCCATC
CATCTGATGCCCAAAGTGAGGATTTTGCCCTCCCCCTCCTCCATACCCTC
CCCCGCCCATCATCATCCC

Coding sequence (CDS) from alignment at scaffold_29:72882..75100+

>mRNA_8876 ID=mRNA_8876|Name=jgi.p|Nanoce1779_2|604347|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_29:72882..75100+ (Nannochloropsis oceanica)
ATGGTAATGGTGGTGAAGATGGTAATGAATGATGGCAAATGGGTGGAGGA
GGGGGGTCTCCCTCCCTCCCTTCCTCCCTCCTTCCTTCCTTCATTCCCAC
CCTCACCCCTCTTCCCAATCCTCAACTCGTGCACATATACAATACTACTA
TTTATTATCATTGTTGCGAATCTCTCTTCTTCTATGTCTCCCATTCGATT
CCTTCATGCTCTTTCTCCCCCTCGTTTATCGCCATGTAACGCACATCCCA
CATACGCACGCGAATGCTCACACACCATGCAGTCTTCATCAATTTCCTTT
CATTACCCTGTGCTTCTCAGCGCCAAGGGACAGGGGGGAGGGAAGAAAAA
ATGCAATTTATTTTTCGCTACTGCTACTGATATAATACGGAATTTGTGTG
GATACGAGATTTTTTTCAAAACAATCACGGAAAGGGGTCAGACAAACGCG
TGTGAGGCCGGCAACAGCGCCTCACACATTCTTGACCCTCTTCTTCTTCC
TCCTTGA

Synonyms

Publications