jgi.p|Nanoce1779_2|546701, mRNA_8875 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546701
Unique Name	mRNA_8875
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1509
Alignment location	scaffold_29:71038..72732 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546787
Track	FilteredModels2
ProteinId	546701

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:71038..72732 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546701	gene_8875	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546701	mRNA_8875-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8875	CDS_8875	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:71038..72732+
coding sequence from alignment at scaffold_29:71038..72732+

mRNA sequence

>mRNA_8875 ID=mRNA_8875|Name=jgi.p|Nanoce1779_2|546701|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
GCTGGAGACTGGCTTCTTTGACATTTCCCAAACCTTCCCGCACTCCCTCA
CACGCCCTGACACACTCAACAGAAATTGTGCCATGCACCAGCCATAGAAA
TTGAAGCAGCCATTGCCGTTCATTTAGGCGTGAAGGCCAACAGGACAAAA
TGGGATCGTCCGCCTCCCCTCTCCCCCCCTGTGCTCCCGTCGCCGCAACC
GATGCCGTTCCTACATCGCCTGCTCCCTCGACTACCCTCCTCCTCCGACA
GGCTCTCGTGGCTTTTTACGAGGTTCACAATCCATCGCAATTGGCTGAAA
CACTGCTCGATGAAATTGTGGGAAAATACCTGGGAAAAGAACACCAGTTG
ATCGCCAAGCTCCAACGCCGCTATGGAGAGGCGCCACTTGTACCCTACCT
TAATAACGACAATTTCTGCGCAAGCGGCAAAAACAGCACAATAAAAACCC
AGGAACCACGTACGGATGGTGGTATTGGCGTGGAGGGTGCACGCAAGATC
GACGCTGAAATAACGAATGAAGCTCGTGTCGACCTCCTCTCCCCCAACTT
CGATGCCACCTTCCTCCTCCTCCTCCCCCACGCACTTAAATCCCTTCCCC
TCCCTCTCCAAGTCAAAGTTCCCGTCCCTCGTGCTCCCGTTTTCGACAAT
CTTTCCCGCTGCAGACACCTTCTTCCGCCCAACCATCCAGAATACGTCCC
CCCCCTCGGGCCGAACGCACAAGCTGCGGCAGCCGCACGTCGTTCAGCAA
CTCTGGCAAGCAAAGCAGCAATATCTTCAGCGAAAGGTCCGCCGGTGCTG
GAAATTTTGGCAGAAAGTTTAAAAAGGGGACCGACGGCGTTGCTGTATCG
GTGCTGGAAGGAGGGGAGAAGGGTGGTGGTGGTAATGAGGAAGATAGATG
GGGTAAGAGGGACGGTTGAGGGGGAGTTAAGAGGATTTGACAGGCATTTG
AATATGATCCTGGGCGATGCACAGGAGCAACAGCAACAACAACAGCAGCT
GCAGCAACATCAGGCCACAAAAGCTGGCAATAGGAAGAGAGAGGCAGCCC
TCGAGATACCGAAACAACAAGGAACACAGCACCAGCAACGGCAAATCATC
CATCGGAGCTTACCCCAGGTGCTGATACGAGGGGACAATGTCGTCATGGT
TTTTGAGGCGAAATCTCAGCATGCCACTTGTACCTTCCTTCCTCCTCTTC
CGTCCAGTGAGCATGACGAGGAGACAGAGAAGAAAGAAGTGGTGAAAAAG
GAGGGTGAGCAGGAGGATGGGGAAGATTTGGCTAGGCCTACGGTACCATC
ACCGCCAGCACAGGAAGCAATACCACAGTCGTTATCGCGGGCTGGAGGGG
AAAAGATGAAGCGAGAGGAGGACGGCCAGGGGGAAGGGGTTAAAAGAAAG
AGGCCACGCTTAGGAAAATTAGTCGAGGTAGATAGATAGGTAGAATGATA
AGAAACAATTAAATAGTGTGTGCGTAGAGCTATCTAAGGGTGTTTAACTG
CCCACCCGT

protein sequence of jgi.p|Nanoce1779_2|546701

>mRNA_8875-protein ID=mRNA_8875-protein|Name=jgi.p|Nanoce1779_2|546701|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MGSSASPLPPCAPVAATDAVPTSPAPSTTLLLRQALVAFYEVHNPSQLAE
TLLDEIVGKYLGKEHQLIAKLQRRYGEAPLVPYLNNDNFCASGKNSTIKT
QEPRTDGGIGVEGARKIDAEITNEARVDLLSPNFDATFLLLLPHALKSLP
LPLQVKVPVPRAPVFDNLSRCRHLLPPNHPEYVPPLGPNAQAAAAARRSA
TLASKAAISSAKGPPVLEILAESLKRGPTALLYRCWKEGRRVVVVMRKID
GVRGTVEGELRGFDRHLNMILGDAQEQQQQQQQLQQHQATKAGNRKREAA
LEIPKQQGTQHQQRQIIHRSLPQVLIRGDNVVMVFEAKSQHATCTFLPPL
PSSEHDEETEKKEVVKKEGEQEDGEDLARPTVPSPPAQEAIPQSLSRAGG
EKMKREEDGQGEGVKRKRPRLGKLVEVDR*

mRNA from alignment at scaffold_29:71038..72732+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8875 ID=mRNA_8875|Name=jgi.p|Nanoce1779_2|546701|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp|location=Sequence derived from alignment at scaffold_29:71038..72732+ (Nannochloropsis oceanica)
GCTGGAGACTGGCTTCTTTGACATTTCCCAAACCTTCCCGCACTCCCTCA
CACGCCCTGACACACTCAACAGAAATTGTGCCATGCACCAGCCATAGAAA
TTGAAGCAGCCATTGCCGTTCATTTAGGCGTGAAGGCCAACAGGACAAAA
TGGGATCGTCCGCCTCCCCTCTCCCCCCCTGTGCTCCCGTCGCCGCAACC
GATGCCGTTCCTACATCGCCTGCTCCCTCGACTACCCTCCTCCTCCGACA
GGCTCTCGTGGCTTTTTACGAGGTTCACAATCCATCGCAATTGGCTGAAA
CACTGCTCGATGAAATTGTGGGAAAATACCTGGGAAAAGAACACCAGTTG
ATCGCCAAGCTCCAACGCCGCTATGGAGAGGCGCCACTTGTACCCTACCT
TAATAACGACAATTTCTGCGCAAGCGGCAAAAACAGCACAATAAAAACCC
AGGAACCACGTACGGATGGTGGTATTGGCGTGGAGGGTGCACGCAAGATC
GACGCTGAAATAACGAATGAAGCTCGTGTCGACCTCCTCTCCCCCAACTT
CGATGCCACCTTCCTCCTCCTCCTCCCCCACGCACTTAAATCCCTTCCCC
TCCCTCTCCAAGTCAAAGTTCCCGTCCCTCGTGCTCCCGTTTTCGACAAT
CTTTCCCGCTGCAGACACCTTCTTCCGCCCAACCATCCAGAATACGTCCC
CCCCCTCGGGCCGAACGCACAAGCTGCGGCAGCCGCACGTCGTTCAGCAA
CTCTGGCAAGCAAAGCAGCAATATCTTCAGCGAAAGGTCCGCCGGTGCTG
GAAATTTTGGCAGAAAGTTTAAAAAGGGGACCGACGGCGTTGCTGTATCG
GTGCTGGAAGGAGGGGAGAAGGGTGGTGGTGGTAATGAGGAAGATAGATG
GGGTAAGAGGGACGGTTGAGGGGGAGTTAAGAGGATTTGACAGGCATTTG
AATATGATCCTGGGCGATGCACAGGAGGTTTTTGTCCTGCCAAGTGCAAT
AATGGGGAAAAGGGATGAGCAAGGGGGGGGAGGGGAGGAGAAAGGAAAGG
AGGAGAAGAAGGGGGGGAAAAGATTGATGCAACGGAAGAGGGGGAGGCGG
GCTGGGAAGAAGCATAAGCTACCGCAGAAGCAGCAGATGCCGGTGCAGTC
GCAACAACAACAGCAACAGCAACAACAACAGCAGCTGCAGCAACATCAGG
CCACAAAAGCTGGCAATAGGAAGAGAGAGGCAGCCCTCGAGATACCGAAA
CAACAAGGAACACAGCACCAGCAACGGCAAATCATCCATCGGAGCTTACC
CCAGGTGCTGATACGAGGGGACAATGTCGTCATGGTTTTTGAGGCGAAAT
CTCAGCATGCCACTTGTACCTTCCTTCCTCCTCTTCCGTCCAGTGAGCAT
GACGAGGAGACAGAGAAGAAAGAAGTGGTGAAAAAGGAGGGTGAGCAGGA
GGATGGGGAAGATTTGGCTAGGCCTACGGTACCATCACCGCCAGCACAGG
AAGCAATACCACAGTCGTTATCGCGGGCTGGAGGGGAAAAGATGAAGCGA
GAGGAGGACGGCCAGGGGGAAGGGGTTAAAAGAAAGAGGCCACGCTTAGG
AAAATTAGTCGAGGTAGATAGATAGGTAGAATGATAAGAAACAATTAAAT
AGTGTGTGCGTAGAGCTATCTAAGGGTGTTTAACTGCCCACCCGT

Coding sequence (CDS) from alignment at scaffold_29:71038..72732+

>mRNA_8875 ID=mRNA_8875|Name=jgi.p|Nanoce1779_2|546701|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_29:71038..72732+ (Nannochloropsis oceanica)
ATGGGATCGTCCGCCTCCCCTCTCCCCCCCTGTGCTCCCGTCGCCGCAAC
CGATGCCGTTCCTACATCGCCTGCTCCCTCGACTACCCTCCTCCTCCGAC
AGGCTCTCGTGGCTTTTTACGAGGTTCACAATCCATCGCAATTGGCTGAA
ACACTGCTCGATGAAATTGTGGGAAAATACCTGGGAAAAGAACACCAGTT
GATCGCCAAGCTCCAACGCCGCTATGGAGAGGCGCCACTTGTACCCTACC
TTAATAACGACAATTTCTGCGCAAGCGGCAAAAACAGCACAATAAAAACC
CAGGAACCACGTACGGATGGTGGTATTGGCGTGGAGGGTGCACGCAAGAT
CGACGCTGAAATAACGAATGAAGCTCGTGTCGACCTCCTCTCCCCCAACT
TCGATGCCACCTTCCTCCTCCTCCTCCCCCACGCACTTAAATCCCTTCCC
CTCCCTCTCCAAGTCAAAGTTCCCGTCCCTCGTGCTCCCGTTTTCGACAA
TCTTTCCCGCTGCAGACACCTTCTTCCGCCCAACCATCCAGAATACGTCC
CCCCCCTCGGGCCGAACGCACAAGCTGCGGCAGCCGCACGTCGTTCAGCA
ACTCTGGCAAGCAAAGCAGCAATATCTTCAGCGAAAGGTCCGCCGGTGCT
GGAAATTTTGGCAGAAAGTTTAAAAAGGGGACCGACGGCGTTGCTGTATC
GGTGCTGGAAGGAGGGGAGAAGGGTGGTGGTGGTAATGAGGAAGATAGAT
GGGGTAAGAGGGACGGTTGAGGGGGAGTTAAGAGGATTTGACAGGCATTT
GAATATGATCCTGGGCGATGCACAGGAGCAACAGCAACAACAACAGCAGC
TGCAGCAACATCAGGCCACAAAAGCTGGCAATAGGAAGAGAGAGGCAGCC
CTCGAGATACCGAAACAACAAGGAACACAGCACCAGCAACGGCAAATCAT
CCATCGGAGCTTACCCCAGGTGCTGATACGAGGGGACAATGTCGTCATGG
TTTTTGAGGCGAAATCTCAGCATGCCACTTGTACCTTCCTTCCTCCTCTT
CCGTCCAGTGAGCATGACGAGGAGACAGAGAAGAAAGAAGTGGTGAAAAA
GGAGGGTGAGCAGGAGGATGGGGAAGATTTGGCTAGGCCTACGGTACCAT
CACCGCCAGCACAGGAAGCAATACCACAGTCGTTATCGCGGGCTGGAGGG
GAAAAGATGAAGCGAGAGGAGGACGGCCAGGGGGAAGGGGTTAAAAGAAA
GAGGCCACGCTTAGGAAAATTAGTCGAGGTAGATAGATAGATGGGATCGT
CCGCCTCCCCTCTCCCCCCCTGTGCTCCCGTCGCCGCAACCGATGCCGTT
CCTACATCGCCTGCTCCCTCGACTACCCTCCTCCTCCGACAGGCTCTCGT
GGCTTTTTACGAGGTTCACAATCCATCGCAATTGGCTGAAACACTGCTCG
ATGAAATTGTGGGAAAATACCTGGGAAAAGAACACCAGTTGATCGCCAAG
CTCCAACGCCGCTATGGAGAGGCGCCACTTGTACCCTACCTTAATAACGA
CAATTTCTGCGCAAGCGGCAAAAACAGCACAATAAAAACCCAGGAACCAC
GTACGGATGGTGGTATTGGCGTGGAGGGTGCACGCAAGATCGACGCTGAA
ATAACGAATGAAGCTCGTGTCGACCTCCTCTCCCCCAACTTCGATGCCAC
CTTCCTCCTCCTCCTCCCCCACGCACTTAAATCCCTTCCCCTCCCTCTCC
AAGTCAAAGTTCCCGTCCCTCGTGCTCCCGTTTTCGACAATCTTTCCCGC
TGCAGACACCTTCTTCCGCCCAACCATCCAGAATACGTCCCCCCCCTCGG
GCCGAACGCACAAGCTGCGGCAGCCGCACGTCGTTCAGCAACTCTGGCAA
GCAAAGCAGCAATATCTTCAGCGAAAGGTCCGCCGGTGCTGGAAATTTTG
GCAGAAAGTTTAAAAAGGGGACCGACGGCGTTGCTGTATCGGTGCTGGAA
GGAGGGGAGAAGGGTGGTGGTGGTAATGAGGAAGATAGATGGGGTAAGAG
GGACGGTTGAGGGGGAGTTAAGAGGATTTGACAGGCATTTGAATATGATC
CTGGGCGATGCACAGGAGCAACAGCAACAACAACAGCAGCTGCAGCAACA
TCAGGCCACAAAAGCTGGCAATAGGAAGAGAGAGGCAGCCCTCGAGATAC
CGAAACAACAAGGAACACAGCACCAGCAACGGCAAATCATCCATCGGAGC
TTACCCCAGGTGCTGATACGAGGGGACAATGTCGTCATGGTTTTTGAGGC
GAAATCTCAGCATGCCACTTGTACCTTCCTTCCTCCTCTTCCGTCCAGTG
AGCATGACGAGGAGACAGAGAAGAAAGAAGTGGTGAAAAAGGAGGGTGAG
CAGGAGGATGGGGAAGATTTGGCTAGGCCTACGGTACCATCACCGCCAGC
ACAGGAAGCAATACCACAGTCGTTATCGCGGGCTGGAGGGGAAAAGATGA
AGCGAGAGGAGGACGGCCAGGGGGAAGGGGTTAAAAGAAAGAGGCCACGC
TTAGGAAAATTAGTCGAGGTAGATAGATAG

Synonyms

Publications