jgi.p|Nanoce1779_2|223679, mRNA_8873 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|223679
Unique NamemRNA_8873
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length368
Alignment locationscaffold_29:67141..67508 -

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Properties
Property NameValue
TranscriptId223765
TrackFilteredModels2
ProteinId223679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:67141..67508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|223679gene_8873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|223679mRNA_8873-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8873CDS_8873Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8873 ID=mRNA_8873|Name=jgi.p|Nanoce1779_2|223679|organism=Nannochloropsis oceanica|type=mRNA|length=368bp
AATTGCGGCAGGTGTGGCGGGGGGCTTTCACAGGGTGTCCCGCAGACGCA
GTGTTGACGCGTTTGAACGCTCAGGAGAAGGAAACGGATTGGAGGGGCGA
TGGTGGAAAGATGATGCTGGCGGAGCCGGGGGGGTGGAAAAATCTGTTTG
CAGGAGTGGACATTCGGGTCGTCTTCTTTGCATTGCTGATCGGGATTCAA
TTTTTCCTGTACGACTGGTTCAAGGAGCTCTTTGGTGTTGCGGCGGATGA
TTTGACGCTGGTGTTGGATGTGTTTGGGAGGATGGGGGGTGAGATTGTGG
AAGGGATAGAGGGGATCGAATTCTAGGCCGATTTCTTTGGATGCCTTCCG
CCCTCTTTTCTTCCCACC
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protein sequence of jgi.p|Nanoce1779_2|223679

>mRNA_8873-protein ID=mRNA_8873-protein|Name=jgi.p|Nanoce1779_2|223679|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MMLAEPGGWKNLFAGVDIRVVFFALLIGIQFFLYDWFKELFGVAADDLTL
VLDVFGRMGGEIVEGIEGIEF*
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mRNA from alignment at scaffold_29:67141..67508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8873 ID=mRNA_8873|Name=jgi.p|Nanoce1779_2|223679|organism=Nannochloropsis oceanica|type=mRNA|length=368bp|location=Sequence derived from alignment at scaffold_29:67141..67508- (Nannochloropsis oceanica)
AATTGCGGCAGGTGTGGCGGGGGGCTTTCACAGGGTGTCCCGCAGACGCA
GTGTTGACGCGTTTGAACGCTCAGGAGAAGGAAACGGATTGGAGGGGCGA
TGGTGGAAAGATGATGCTGGCGGAGCCGGGGGGGTGGAAAAATCTGTTTG
CAGGAGTGGACATTCGGGTCGTCTTCTTTGCATTGCTGATCGGGATTCAA
TTTTTCCTGTACGACTGGTTCAAGGAGCTCTTTGGTGTTGCGGCGGATGA
TTTGACGCTGGTGTTGGATGTGTTTGGGAGGATGGGGGGTGAGATTGTGG
AAGGGATAGAGGGGATCGAATTCTAGGCCGATTTCTTTGGATGCCTTCCG
CCCTCTTTTCTTCCCACC
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Coding sequence (CDS) from alignment at scaffold_29:67141..67508-

>mRNA_8873 ID=mRNA_8873|Name=jgi.p|Nanoce1779_2|223679|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_29:67141..67508- (Nannochloropsis oceanica)
ATGATGCTGGCGGAGCCGGGGGGGTGGAAAAATCTGTTTGCAGGAGTGGA
CATTCGGGTCGTCTTCTTTGCATTGCTGATCGGGATTCAATTTTTCCTGT
ACGACTGGTTCAAGGAGCTCTTTGGTGTTGCGGCGGATGATTTGACGCTG
GTGTTGGATGTGTTTGGGAGGATGGGGGGTGAGATTGTGGAAGGGATAGA
GGGGATCGAATTCTAG
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Synonyms
Publications