jgi.p|Nanoce1779_2|574519, mRNA_887 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574519
Unique NamemRNA_887
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1076
Alignment locationscaffold_2:663857..664932 +

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Properties
Property NameValue
TranscriptId574605
TrackFilteredModels2
ProteinId574519
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:663857..664932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574519gene_887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574519mRNA_887-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_887CDS_887Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_887 ID=mRNA_887|Name=jgi.p|Nanoce1779_2|574519|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
ACAGGTATACAAGCATGCCGTACGAAGCTGTCATTGACCCAAATGAGGAC
GCTGCCATCGTGCGCATGAAGGAATGCCTTTCAAAATTTGAGACGGAGCA
AGGACGACTGGCGGGCTTCGCATTCAAGCCTCGTCCCTCTGACGTCTTCA
TCGTCACCTCGCCTAAGTCAGGCACAACCTGGCTGCAGCATATATGCCAC
CAATTGCGGACTAAGGGCGATATGGAATTTGACGACATCTCGGAAGTGGT
CCCATGGATAGAGCTAGCGCATGATTTGGGGCAAGATTTACAAGCAGACC
AACCCGGAGAGCCGCCGCGGCTGTACAAGACACATGCCTGGAGGCCTGAT
GTTCCTAAAGGTGGGCGTTACATTGTCTGCTTTCGAAACCCAGCGGATGT
GGTATTTAGTTTTTATCGGTTTTTTGATGGGTGGTTTATTCAGCCTCGGG
GGGCTGTGTCGTTTGAGACGTTTGCTCAGGAGTTTTTTCTCCAGAGGGGA
AAGCCAGAGAACTCAATGCAGAATGCTTCGTATTGGCATCATTTGGTCAG
CTGGCTGGGGAAAAAGGGAGAGGAGGAGGTGCTTTTCGTTGCATTTGAGG
ACATGAAGGAGGATTTGGACCGGCAAGTGAGGCGGATTGCGACGTTTTTG
GGGTATGTGCCGGGGTCAGCTGATTATGAGGAACGTGTAAAGGTGGCGAC
GGCACATTCGACCCTTGCGTTTATGCAGGAGCACAGAGAGAAATTTGACG
AGCATTTGACCCAAGATGCCCGAAACGAGGTGATGGGCTTGCCACCGGAG
GCGGGGCGTCAGAATAGCAAGGTAACGCAAAGAGTGGTGGGTGCCACGGG
AGCTATCATGACGCCGGATCTCCTGAAGGCAATGCGGGCGAAGTGGGAGG
AGGTGGTCACCCCGTATTTAGGATGTGTAGACTACGTGGATCTGCTTGCC
CGGCATCGGCGGCAGCAAGAATAATAGTGTGTGCGTATGCAATATGTGAA
ATCTGAAGGTATGAACGGGATACATCACAATGTCACACAAAAAAGCCAGT
TTTATAAAATTACCCATGAGGTGCAC
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protein sequence of jgi.p|Nanoce1779_2|574519

>mRNA_887-protein ID=mRNA_887-protein|Name=jgi.p|Nanoce1779_2|574519|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MPYEAVIDPNEDAAIVRMKECLSKFETEQGRLAGFAFKPRPSDVFIVTSP
KSGTTWLQHICHQLRTKGDMEFDDISEVVPWIELAHDLGQDLQADQPGEP
PRLYKTHAWRPDVPKGGRYIVCFRNPADVVFSFYRFFDGWFIQPRGAVSF
ETFAQEFFLQRGKPENSMQNASYWHHLVSWLGKKGEEEVLFVAFEDMKED
LDRQVRRIATFLGYVPGSADYEERVKVATAHSTLAFMQEHREKFDEHLTQ
DARNEVMGLPPEAGRQNSKVTQRVVGATGAIMTPDLLKAMRAKWEEVVTP
YLGCVDYVDLLARHRRQQE*
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mRNA from alignment at scaffold_2:663857..664932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_887 ID=mRNA_887|Name=jgi.p|Nanoce1779_2|574519|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp|location=Sequence derived from alignment at scaffold_2:663857..664932+ (Nannochloropsis oceanica)
ACAGGTATACAAGCATGCCGTACGAAGCTGTCATTGACCCAAATGAGGAC
GCTGCCATCGTGCGCATGAAGGAATGCCTTTCAAAATTTGAGACGGAGCA
AGGACGACTGGCGGGCTTCGCATTCAAGCCTCGTCCCTCTGACGTCTTCA
TCGTCACCTCGCCTAAGTCAGGCACAACCTGGCTGCAGCATATATGCCAC
CAATTGCGGACTAAGGGCGATATGGAATTTGACGACATCTCGGAAGTGGT
CCCATGGATAGAGCTAGCGCATGATTTGGGGCAAGATTTACAAGCAGACC
AACCCGGAGAGCCGCCGCGGCTGTACAAGACACATGCCTGGAGGCCTGAT
GTTCCTAAAGGTGGGCGTTACATTGTCTGCTTTCGAAACCCAGCGGATGT
GGTATTTAGTTTTTATCGGTTTTTTGATGGGTGGTTTATTCAGCCTCGGG
GGGCTGTGTCGTTTGAGACGTTTGCTCAGGAGTTTTTTCTCCAGAGGGGA
AAGCCAGAGAACTCAATGCAGAATGCTTCGTATTGGCATCATTTGGTCAG
CTGGCTGGGGAAAAAGGGAGAGGAGGAGGTGCTTTTCGTTGCATTTGAGG
ACATGAAGGAGGATTTGGACCGGCAAGTGAGGCGGATTGCGACGTTTTTG
GGGTATGTGCCGGGGTCAGCTGATTATGAGGAACGTGTAAAGGTGGCGAC
GGCACATTCGACCCTTGCGTTTATGCAGGAGCACAGAGAGAAATTTGACG
AGCATTTGACCCAAGATGCCCGAAACGAGGTGATGGGCTTGCCACCGGAG
GCGGGGCGTCAGAATAGCAAGGTAACGCAAAGAGTGGTGGGTGCCACGGG
AGCTATCATGACGCCGGATCTCCTGAAGGCAATGCGGGCGAAGTGGGAGG
AGGTGGTCACCCCGTATTTAGGATGTGTAGACTACGTGGATCTGCTTGCC
CGGCATCGGCGGCAGCAAGAATAATAGTGTGTGCGTATGCAATATGTGAA
ATCTGAAGGTATGAACGGGATACATCACAATGTCACACAAAAAAGCCAGT
TTTATAAAATTACCCATGAGGTGCAC
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Coding sequence (CDS) from alignment at scaffold_2:663857..664932+

>mRNA_887 ID=mRNA_887|Name=jgi.p|Nanoce1779_2|574519|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_2:663857..664932+ (Nannochloropsis oceanica)
ATGCCGTACGAAGCTGTCATTGACCCAAATGAGGACGCTGCCATCGTGCG
CATGAAGGAATGCCTTTCAAAATTTGAGACGGAGCAAGGACGACTGGCGG
GCTTCGCATTCAAGCCTCGTCCCTCTGACGTCTTCATCGTCACCTCGCCT
AAGTCAGGCACAACCTGGCTGCAGCATATATGCCACCAATTGCGGACTAA
GGGCGATATGGAATTTGACGACATCTCGGAAGTGGTCCCATGGATAGAGC
TAGCGCATGATTTGGGGCAAGATTTACAAGCAGACCAACCCGGAGAGCCG
CCGCGGCTGTACAAGACACATGCCTGGAGGCCTGATGTTCCTAAAGGTGG
GCGTTACATTGTCTGCTTTCGAAACCCAGCGGATGTGGTATTTAGTTTTT
ATCGGTTTTTTGATGGGTGGTTTATTCAGCCTCGGGGGGCTGTGTCGTTT
GAGACGTTTGCTCAGGAGTTTTTTCTCCAGAGGGGAAAGCCAGAGAACTC
AATGCAGAATGCTTCGTATTGGCATCATTTGGTCAGCTGGCTGGGGAAAA
AGGGAGAGGAGGAGGTGCTTTTCGTTGCATTTGAGGACATGAAGGAGGAT
TTGGACCGGCAAGTGAGGCGGATTGCGACGTTTTTGGGGTATGTGCCGGG
GTCAGCTGATTATGAGGAACGTGTAAAGGTGGCGACGGCACATTCGACCC
TTGCGTTTATGCAGGAGCACAGAGAGAAATTTGACGAGCATTTGACCCAA
GATGCCCGAAACGAGGTGATGGGCTTGCCACCGGAGGCGGGGCGTCAGAA
TAGCAAGGTAACGCAAAGAGTGGTGGGTGCCACGGGAGCTATCATGACGC
CGGATCTCCTGAAGGCAATGCGGGCGAAGTGGGAGGAGGTGGTCACCCCG
TATTTAGGATGTGTAGACTACGTGGATCTGCTTGCCCGGCATCGGCGGCA
GCAAGAATAA
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Synonyms
Publications