jgi.p|Nanoce1779_2|223522, mRNA_8869 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|223522
Unique Name	mRNA_8869
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1421
Alignment location	scaffold_29:57410..59187 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	223608
Track	FilteredModels2
ProteinId	223522

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:57410..59187 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|223522	gene_8869	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|223522	mRNA_8869-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8869	CDS_8869	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:57410..59187-
coding sequence from alignment at scaffold_29:57410..59187-

mRNA sequence

>mRNA_8869 ID=mRNA_8869|Name=jgi.p|Nanoce1779_2|223522|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp
CCCCACCCTGCTCGCGCAACAGACTTCGCTCCGGCAGCATGGACTCCAGC
TGCGGCAGCCTCACGATGAGGAGAAGAAGACGCCTGACCACCCCCTCTTC
CGCCTCCGCCTCCTCCCTCGTCCTCCTCCTTGTCCTGCTCTCGTCCTCCT
TCTTTCCTGCACCTACCACCCACGCGTTTTTGCTTCACTCCTTCACGCCT
TCCGTGCACTTGTACGGTGGCAGCAGTAGTAGTAGTACCATCAGCAGTAG
TAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGCCTACACA
GGGCCTTGCGGATGAGTGATGAAGCATACTATGGCGAGGGAGGAGACACA
AAGGGAGGGGCCAATGCACGGCAACAGAAAAGAAACCGCCGCCCTACTCG
CCCCCCACCCCCGCCTGTTCGCCGCACCGACGGGGAGGGAGGTAAAGGAG
GAGGAGGACCTCCAAGGCGAGGTAGCGGCCAGGGTGTACCGCAGAGGGAT
ATTGCACAGTTGATTGAACGGACGGGGCAGAACGAGCCAGCCTGGAAACG
AGCTGTGAATTTGGACGAGGTGGGGCTGGTGGGAGGCCGGGATCCACGGC
CCCCTCGCTCGCGACCGCAGGGAGGGGGGGGTGGAGGGCAGAGGCATCAG
GGAGGAGGGCGGGGACCGGGGGAAGCTGCGAGTGGATATCGAGGGAAGGG
GGGAGGAGGGGGGAGGAGGCCGGTGCAGCAGAAGAAGAGTTGGTGGACAA
GTGAGTTTAACAAGATGGATGGAGAGCTTGAGGTGCCCTTGCCCTGGTGG
GCGGAGGGAGCGAGGGAAGGAGGGATGGAGGGGGATTGGAAGTATGGGGA
CAGGAAGGTGGTGGAGCTGAAGGAGGAGCTGGCAAGGAGGGGGGCGAAAG
TGAGTGGCACCAAGGCGGAGCTAATTGAGCGGTTGGAGAGGTGAGAAGGG
GAGGGAAGGATGGATCGAGGGAGAGAGGAAAGGAAGGACGTTTCTCTTGT
CAGCGGGGAATAGAGGGAAAGGGGGGAGGGAAAGAGAGAGGGACATGGAG
GCCACTCGATGGTGCGACGGACATGCTACGAATTACTCGTTTATACCTGA
ATTTAATTTCTTTCTCCCAAGCTTCATATTTTCGTCCTCTGACTTCCACT
TATATACTTCTTCTTCCCTTTTTCCCTGTCTTCCTGTTCCTCTTTCCCCC
CCTTAGTCTCGACAAGCTCTACACCCTGACCGACGACGGCTTCCGGGAAG
TGACGATTTTGCATGACGAGGAGGAGGATTCAAACCTCCCTCCGTGTTTC
CCTAACACCTACGGCGATGAGTTCGAGCAGCGCCTCCTGGAAGAGCAGGA
GGCGGGTGTAGATGTCAAGAATTATGCTCCCTAGCTCTAGAGTAGTGAGG
ATGGGGGGGGGGAGGGAGGGA

protein sequence of jgi.p|Nanoce1779_2|223522

>mRNA_8869-protein ID=mRNA_8869-protein|Name=jgi.p|Nanoce1779_2|223522|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MDSSCGSLTMRRRRRLTTPSSASASSLVLLLVLLSSSFFPAPTTHAFLLH
SFTPSVHLYGGSSSSSTISSSSSSSSSSSSSSSRSLHRALRMSDEAYYGE
GGDTKGGANARQQKRNRRPTRPPPPPVRRTDGEGGKGGGGPPRRGSGQGV
PQRDIAQLIERTGQNEPAWKRAVNLDEVGLVGGRDPRPPRSRPQGGGGGG
QRHQGGGRGPGEAASGYRGKGGGGGRRPVQQKKSWWTSEFNKMDGELEVP
LPWWAEGAREGGMEGDWKYGDRKVVELKEELARRGAKVSGTKAELIERLE
R*

mRNA from alignment at scaffold_29:57410..59187-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8869 ID=mRNA_8869|Name=jgi.p|Nanoce1779_2|223522|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_29:57410..59187- (Nannochloropsis oceanica)
CCCCACCCTGCTCGCGCAACAGACTTCGCTCCGGCAGCATGGACTCCAGC
TGCGGCAGCCTCACGATGAGGAGAAGAAGACGCCTGACCACCCCCTCTTC
CGCCTCCGCCTCCTCCCTCGTCCTCCTCCTTGTCCTGCTCTCGTCCTCCT
TCTTTCCTGCACCTACCACCCACGCGTTTTTGCTTCACTCCTTCACGCCT
TCCGTGCACTTGTACGGTGGCAGCAGTAGTAGTAGTACCATCAGCAGTAG
TAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGCCTACACA
GGGCCTTGCGGATGAGTGATGAAGCATACTATGGCGAGGGAGGAGACACA
AAGGGAGGGGCCAATGCACGGGTACGAGTTTTGTATGGGTACCGTGAGAT
GTCCATTCCCCCTTTCTGTCTGTGAAGTCAGTGGCGACAGCAGTACGAAA
ATGAGAAGGATAAGATTCGCATGCCATTTCTCTTACTACCGCTTCTGTGG
GAGGCAGCAGGCAGCCTTTTATCCCATTCCCCTTTCAATCTCCTTCTTTA
AATTATTTATTTAACAACAGCAACAGAAAAGAAACCGCCGCCCTACTCGC
CCCCCACCCCCGCCTGTTCGCCGCACCGACGGGGAGGGAGGTAAAGGAGG
AGGAGGACCTCCAAGGCGAGGTAGCGGCCAGGGTGTACCGCAGAGGGATA
TTGCACAGTTGATTGAACGGTACGTGTGACGGAAGGGAGGGAGAGAGGGA
GGGAGGGCCGGAGGGAGAGAGAGAGAGAGAGGAAGGTGAAGGTGGCTGCT
CTTGGAGGAATGACAAGCCCATCTCCACACCTCACACGCCCTCTTTCCCT
CCCTCCCTCCCTTCCTCCTTCATGTAGGACGGGGCAGAACGAGCCAGCCT
GGAAACGAGCTGTGAATTTGGACGAGGTGGGGCTGGTGGGAGGCCGGGAT
CCACGGCCCCCTCGCTCGCGACCGCAGGGAGGGGGGGGTGGAGGGCAGAG
GCATCAGGGAGGAGGGCGGGGACCGGGGGAAGCTGCGAGTGGATATCGAG
GGAAGGGGGGAGGAGGGGGGAGGAGGCCGGTGCAGCAGAAGAAGAGTTGG
TGGACAAGTGAGTTTAACAAGATGGATGGAGAGCTTGAGGTGCCCTTGCC
CTGGTGGGCGGAGGGAGCGAGGGAAGGAGGGATGGAGGGGGATTGGAAGT
ATGGGGACAGGAAGGTGGTGGAGCTGAAGGAGGAGCTGGCAAGGAGGGGG
GCGAAAGTGAGTGGCACCAAGGCGGAGCTAATTGAGCGGTTGGAGAGGTG
AGAAGGGGAGGGAAGGATGGATCGAGGGAGAGAGGAAAGGAAGGACGTTT
CTCTTGTCAGCGGGGAATAGAGGGAAAGGGGGGAGGGAAAGAGAGAGGGA
CATGGAGGCCACTCGATGGTGCGACGGACATGCTACGAATTACTCGTTTA
TACCTGAATTTAATTTCTTTCTCCCAAGCTTCATATTTTCGTCCTCTGAC
TTCCACTTATATACTTCTTCTTCCCTTTTTCCCTGTCTTCCTGTTCCTCT
TTCCCCCCCTTAGTCTCGACAAGCTCTACACCCTGACCGACGACGGCTTC
CGGGAAGTGACGATTTTGCATGACGAGGAGGAGGATTCAAACCTCCCTCC
GTGTTTCCCTAACACCTACGGCGATGAGTTCGAGCAGCGCCTCCTGGAAG
AGCAGGAGGCGGGTGTAGATGTCAAGAATTATGCTCCCTAGCTCTAGAGT
AGTGAGGATGGGGGGGGGGAGGGAGGGA

Coding sequence (CDS) from alignment at scaffold_29:57410..59187-

>mRNA_8869 ID=mRNA_8869|Name=jgi.p|Nanoce1779_2|223522|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_29:57410..59187- (Nannochloropsis oceanica)
GACGGGGCAGAACGAGCCAGCCTGGAAACGAGCTGTGAATTTGGACGAGG
TGGGGCTGGTGGGAGGCCGGGATCCACGGCCCCCTCGCTCGCGACCGCAG
GGAGGGGGGGGTGGAGGGCAGAGGCATCAGGGAGGAGGGCGGGGACCGGG
GGAAGCTGCGAGTGGATATCGAGGGAAGGGGGGAGGAGGGGGGAGGAGGC
CGGTGCAGCAGAAGAAGAGTTGGTGGACAAGTGAGTTTAACAAGATGGAT
GGAGAGCTTGAGGTGCCCTTGCCCTGGTGGGCGGAGGGAGCGAGGGAAGG
AGGGATGGAGGGGGATTGGAAGTATGGGGACAGGAAGGTGGTGGAGCTGA
AGGAGGAGCTGGCAAGGAGGGGGGCGAAAGTGAGTGGCACCAAGGCGGAG
CTAATTGAGCGGTTGGAGAGGTGACAACAGAAAAGAAACCGCCGCCCTAC
TCGCCCCCCACCCCCGCCTGTTCGCCGCACCGACGGGGAGGGAGGTAAAG
GAGGAGGAGGACCTCCAAGGCGAGGTAGCGGCCAGGGTGTACCGCAGAGG
GATATTGCACAGTTGATTGAACGATGGACTCCAGCTGCGGCAGCCTCACG
ATGAGGAGAAGAAGACGCCTGACCACCCCCTCTTCCGCCTCCGCCTCCTC
CCTCGTCCTCCTCCTTGTCCTGCTCTCGTCCTCCTTCTTTCCTGCACCTA
CCACCCACGCGTTTTTGCTTCACTCCTTCACGCCTTCCGTGCACTTGTAC
GGTGGCAGCAGTAGTAGTAGTACCATCAGCAGTAGTAGTAGTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCGAAGCCTACACAGGGCCTTGCGGATGA
GTGATGAAGCATACTATGGCGAGGGAGGAGACACAAAGGGAGGGGCCAAT
GCACGGGACGGGGCAGAACGAGCCAGCCTGGAAACGAGCTGTGAATTTGG
ACGAGGTGGGGCTGGTGGGAGGCCGGGATCCACGGCCCCCTCGCTCGCGA
CCGCAGGGAGGGGGGGGTGGAGGGCAGAGGCATCAGGGAGGAGGGCGGGG
ACCGGGGGAAGCTGCGAGTGGATATCGAGGGAAGGGGGGAGGAGGGGGGA
GGAGGCCGGTGCAGCAGAAGAAGAGTTGGTGGACAAGTGAGTTTAACAAG
ATGGATGGAGAGCTTGAGGTGCCCTTGCCCTGGTGGGCGGAGGGAGCGAG
GGAAGGAGGGATGGAGGGGGATTGGAAGTATGGGGACAGGAAGGTGGTGG
AGCTGAAGGAGGAGCTGGCAAGGAGGGGGGCGAAAGTGAGTGGCACCAAG
GCGGAGCTAATTGAGCGGTTGGAGAGGTGACAACAGAAAAGAAACCGCCG
CCCTACTCGCCCCCCACCCCCGCCTGTTCGCCGCACCGACGGGGAGGGAG
GTAAAGGAGGAGGAGGACCTCCAAGGCGAGGTAGCGGCCAGGGTGTACCG
CAGAGGGATATTGCACAGTTGATTGAACGATGGACTCCAGCTGCGGCAGC
CTCACGATGAGGAGAAGAAGACGCCTGACCACCCCCTCTTCCGCCTCCGC
CTCCTCCCTCGTCCTCCTCCTTGTCCTGCTCTCGTCCTCCTTCTTTCCTG
CACCTACCACCCACGCGTTTTTGCTTCACTCCTTCACGCCTTCCGTGCAC
TTGTACGGTGGCAGCAGTAGTAGTAGTACCATCAGCAGTAGTAGTAGTAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGCCTACACAGGGCCTTGC
GGATGAGTGATGAAGCATACTATGGCGAGGGAGGAGACACAAAGGGAGGG
GCCAATGCACGGGACGGGGCAGAACGAGCCAGCCTGGAAACGAGCTGTGA
ATTTGGACGAGGTGGGGCTGGTGGGAGGCCGGGATCCACGGCCCCCTCGC
TCGCGACCGCAGGGAGGGGGGGGTGGAGGGCAGAGGCATCAGGGAGGAGG
GCGGGGACCGGGGGAAGCTGCGAGTGGATATCGAGGGAAGGGGGGAGGAG
GGGGGAGGAGGCCGGTGCAGCAGAAGAAGAGTTGGTGGACAAGTGAGTTT
AACAAGATGGATGGAGAGCTTGAGGTGCCCTTGCCCTGGTGGGCGGAGGG
AGCGAGGGAAGGAGGGATGGAGGGGGATTGGAAGTATGGGGACAGGAAGG
TGGTGGAGCTGAAGGAGGAGCTGGCAAGGAGGGGGGCGAAAGTGAGTGGC
ACCAAGGCGGAGCTAATTGAGCGGTTGGAGAGGTGACAACAGAAAAGAAA
CCGCCGCCCTACTCGCCCCCCACCCCCGCCTGTTCGCCGCACCGACGGGG
AGGGAGGTAAAGGAGGAGGAGGACCTCCAAGGCGAGGTAGCGGCCAGGGT
GTACCGCAGAGGGATATTGCACAGTTGATTGAACGATGGACTCCAGCTGC
GGCAGCCTCACGATGAGGAGAAGAAGACGCCTGACCACCCCCTCTTCCGC
CTCCGCCTCCTCCCTCGTCCTCCTCCTTGTCCTGCTCTCGTCCTCCTTCT
TTCCTGCACCTACCACCCACGCGTTTTTGCTTCACTCCTTCACGCCTTCC
GTGCACTTGTACGGTGGCAGCAGTAGTAGTAGTACCATCAGCAGTAGTAG
TAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGAAGCCTACACAGGG
CCTTGCGGATGAGTGATGAAGCATACTATGGCGAGGGAGGAGACACAAAG
GGAGGGGCCAATGCACGG

Synonyms

Publications