jgi.p|Nanoce1779_2|223523, mRNA_8868 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|223523
Unique NamemRNA_8868
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1102
Alignment locationscaffold_29:56122..57408 -

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Properties
Property NameValue
TranscriptId223609
TrackFilteredModels2
ProteinId223523
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:56122..57408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|223523gene_8868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|223523mRNA_8868-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8868CDS_8868Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8868 ID=mRNA_8868|Name=jgi.p|Nanoce1779_2|223523|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp
GGAAGGGGGGAAAGCTCAAAGCACCTTCTCGAGTGCAGTCCAGCCAAGCA
AAAGCACAAACAGAAACAAAGAAATGACGAGAAAATAATTGACCTCGATA
CTAGAGCTCTGGCACATACATCCCCGTTCTCGAACATACTTTCTTATTTT
ATTTACCATCTTTCCGACCCTCTCAACCTCCCCTCTCCCGAACTAAGTTT
CACTTCTTCCTTCAGAGAAACCATCAGGGGTTGACCAAGATTAGCCTTGA
AGAATGCTTTTTGTGATTTCCCCCCTTCTTGTTGTGTTTGATGCCGGCAT
TCCTAGAAGTTGTGATGCGGCAAGCTTCACTCCCCGGAGAATGTTCGTCA
ATCGTCATGGCGTCGATCGATCATCCCATTTTATGTATAACCCTTTTGCA
CCACAACCCGGGCGACAGGATACGCTTCAAAACCATAAAGGACTGCATCT
GCACCATCCTTCCAGTCATAAGACAAGACAAGCCACTGGTGCTTTGAACT
CGAGACCTTCATCCAACCACCATCAGCAGCAATGGACCCCGATTTCCTTT
TCCCCAAAAACAGCACCAAGACACTTCACGGCTCCTCCGCGCTACTGACT
ACCCTCGTGAGCTGTACGGCCCTTCTCTATTTTAAGCATGTCTGGACTCT
CACTGTGCAGGGTGGAGCCGCAATCCAATCCGGAAACCGCATCGACGAGG
ACTACAACAGGCTAGGCCTCACCCGCCCCTCGGCCGTGTCAGAAGCGGAC
CAACAAAATGACAAGCGTTGGCGTCGCATCGTTGCCAATGATTTGGAGAA
TATTCCGATTGGTTTAATCGTGCTGTGGTCGGCGGCAATGGCTACGAGTG
CCAAGGGTTCGGATGGAGGGGTCGGGGTGATAGTACTCACAATCCTATTT
ACCATCTCGAGGTTTGCGTACACATATTGTTTTGTAACGGCGTTGCAGCC
GTGGAGAACGGTGGCATGGACGGCGGGGGTGCTGTGTGTGGTGGTGGCGG
CCTGCTTGGGGGTGGTGGTTGCCTTTATTGCACAGTTTGACTGAGCGAGT
TAGGGCGAGGGAGGAAGGGAAGGAGGCTGCACCGGCGAGCATCCCAAGAA
AT
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protein sequence of jgi.p|Nanoce1779_2|223523

>mRNA_8868-protein ID=mRNA_8868-protein|Name=jgi.p|Nanoce1779_2|223523|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MDPDFLFPKNSTKTLHGSSALLTTLVSCTALLYFKHVWTLTVQGGAAIQS
GNRIDEDYNRLGLTRPSAVSEADQQNDKRWRRIVANDLENIPIGLIVLWS
AAMATSAKGSDGGVGVIVLTILFTISRFAYTYCFVTALQPWRTVAWTAGV
LCVVVAACLGVVVAFIAQFD*
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mRNA from alignment at scaffold_29:56122..57408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8868 ID=mRNA_8868|Name=jgi.p|Nanoce1779_2|223523|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at scaffold_29:56122..57408- (Nannochloropsis oceanica)
GGAAGGGGGGAAAGCTCAAAGCACCTTCTCGAGTGCAGTCCAGCCAAGCA
AAAGCACAAACAGAAACAAAGAAATGACGAGAAAATAATTGACCTCGATA
CTAGAGCTCTGGCACATACATCCCCGTTCTCGAACATACTTTCTTATTTT
ATTTACCATCTTTCCGACCCTCTCAACCTCCCCTCTCCCGAACTAAGTTT
CACTTCTTCCTTCAGAGAAACCATCAGGGGTTGACCAAGATTAGCCTTGA
AGAATGCTTTTTGTGATTTCCCCCCTTCTTGTTGTGTTTGATGCCGGCAT
TCCTAGAAGTTGTGATGCGGCAAGCTTCACTCCCCGGAGAATGTTCGTCA
ATCGTCATGGCGTCGATCGATCATCCCATTTTATGTATAACCCTTTTGCA
CCACAACCCGGGCGACAGGATACGCTTCAAAACCATAAAGGACTGCATCT
GCACCATCCTTCCAGTCATAAGACAAGACAAGCCACTGGTGCTTTGAACT
CGAGACCTTCATCCAACCACCATCAGCAGCAATGGACCCCGATTTCCTTT
TCCCCAAAAACAGCACCAAGACACTTCACGGCTCCTCCGCGCTACTGACT
ACCCTCGTGAGCTGTACGGCCCTTCTCTATTTTAAGCATGTCTGGACTCT
CACTGTGCAGGTATGGCTGAGTCACTGCTTGTTTGCCTTGGTCGAGGAGG
ATACGCATATGTCCCGATCGTCTTTTTCATGTTTCCCCCCAGTTCGAGAC
GTACCGTGTCGCTGAATGATATTCGAGTAATGCCTTACCTAGGGCAACTC
TTTCAACTTACCTACTCTCCCCTCTCTTTCCCCTTCAACCACTAGGGTGG
AGCCGCAATCCAATCCGGAAACCGCATCGACGAGGACTACAACAGGCTAG
GCCTCACCCGCCCCTCGGCCGTGTCAGAAGCGGACCAACAAAATGACAAG
CGTTGGCGTCGCATCGTTGCCAATGATTTGGAGAATATTCCGATTGGTTT
AATCGTGCTGTGGTCGGCGGCAATGGCTACGAGTGCCAAGGGTTCGGATG
GAGGGGTCGGGGTGATAGTACTCACAATCCTATTTACCATCTCGAGGTTT
GCGTACACATATTGTTTTGTAACGGCGTTGCAGCCGTGGAGAACGGTGGC
ATGGACGGCGGGGGTGCTGTGTGTGGTGGTGGCGGCCTGCTTGGGGGTGG
TGGTTGCCTTTATTGCACAGTTTGACTGAGCGAGTTAGGGCGAGGGAGGA
AGGGAAGGAGGCTGCACCGGCGAGCATCCCAAGAAAT
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Coding sequence (CDS) from alignment at scaffold_29:56122..57408-

>mRNA_8868 ID=mRNA_8868|Name=jgi.p|Nanoce1779_2|223523|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_29:56122..57408- (Nannochloropsis oceanica)
GGTGGAGCCGCAATCCAATCCGGAAACCGCATCGACGAGGACTACAACAG
GCTAGGCCTCACCCGCCCCTCGGCCGTGTCAGAAGCGGACCAACAAAATG
ACAAGCGTTGGCGTCGCATCGTTGCCAATGATTTGGAGAATATTCCGATT
GGTTTAATCGTGCTGTGGTCGGCGGCAATGGCTACGAGTGCCAAGGGTTC
GGATGGAGGGGTCGGGGTGATAGTACTCACAATCCTATTTACCATCTCGA
GGTTTGCGTACACATATTGTTTTGTAACGGCGTTGCAGCCGTGGAGAACG
GTGGCATGGACGGCGGGGGTGCTGTGTGTGGTGGTGGCGGCCTGCTTGGG
GGTGGTGGTTGCCTTTATTGCACAGTTTGACTGAATGGACCCCGATTTCC
TTTTCCCCAAAAACAGCACCAAGACACTTCACGGCTCCTCCGCGCTACTG
ACTACCCTCGTGAGCTGTACGGCCCTTCTCTATTTTAAGCATGTCTGGAC
TCTCACTGTGCAGGGTGGAGCCGCAATCCAATCCGGAAACCGCATCGACG
AGGACTACAACAGGCTAGGCCTCACCCGCCCCTCGGCCGTGTCAGAAGCG
GACCAACAAAATGACAAGCGTTGGCGTCGCATCGTTGCCAATGATTTGGA
GAATATTCCGATTGGTTTAATCGTGCTGTGGTCGGCGGCAATGGCTACGA
GTGCCAAGGGTTCGGATGGAGGGGTCGGGGTGATAGTACTCACAATCCTA
TTTACCATCTCGAGGTTTGCGTACACATATTGTTTTGTAACGGCGTTGCA
GCCGTGGAGAACGGTGGCATGGACGGCGGGGGTGCTGTGTGTGGTGGTGG
CGGCCTGCTTGGGGGTGGTGGTTGCCTTTATTGCACAGTTTGACTGAATG
GACCCCGATTTCCTTTTCCCCAAAAACAGCACCAAGACACTTCACGGCTC
CTCCGCGCTACTGACTACCCTCGTGAGCTGTACGGCCCTTCTCTATTTTA
AGCATGTCTGGACTCTCACTGTGCAG
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Synonyms
Publications