jgi.p|Nanoce1779_2|604316, mRNA_8867 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604316
Unique NamemRNA_8867
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length738
Alignment locationscaffold_29:55255..55992 +

Link to JBrowse

Properties
Property NameValue
TranscriptId604402
TrackFilteredModels2
ProteinId604316
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:55255..55992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604316gene_8867Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604316mRNA_8867-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8867CDS_8867Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8867 ID=mRNA_8867|Name=jgi.p|Nanoce1779_2|604316|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGAGGAGGATGA
AGACGAAGAAGAGAAAGAGGCAGCTGCTGCCCTCCAAGGCGACGACCCTC
CCAGTCCCACCGCCTCGCTCGCCGAAGCCGAGAGCCAGGCCATGAGGGAG
GGCAATAAATGATGCTTCTTATGGGGGTTGGGGTCCAGACACAGGAACCT
TGGGAGGGGGTCTCGAGGGAGGAAAGGGGGGAGGGAGAGTGTTCGATGGA
GGAGGGGGAGAGGGAGGAGGAGGGCTCGTGGAAGGGTGAGATGAGTATGA
CACCGACGTACCATTCATCATCTTCGTTGTGGGAGGGGGATGGAGGGAAG
GAGGACGAGGTGGAGGATGAAGGCGAGGATCCTGGAATTGAGATTAAGCT
CGTGGAGGTGAAGAGTAAAAATGATTTTTTGTCTGACCATCAGTTGGCAT
GGATTGACCGATTTGTGAAGGATGAGAGGAGAAGAGGGAGGAGGAGGGGT
GGGAAGGGAGAGACGGAGGTGAGGGAGCGGAGGGAGGAAGGTCCGCCTTG
CAGGTCGTTTGAGCTTTGCCATGTCAGGAGTTTGGATCGGCCTGTGGAGG
GTAAGAAAGGGGGAAAGCAGCGGTAAGAGAAGGAGGAAGAGGAGGAAGAA
GTGGATGAAACGATGGAGGGAGAGGAGAAGGAGGAGGAGGCGGAGGAGGA
GGGGGAGGAGGGGGAGGAAAAGGAGGAGTAAATGCGGG
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protein sequence of jgi.p|Nanoce1779_2|604316

>mRNA_8867-protein ID=mRNA_8867-protein|Name=jgi.p|Nanoce1779_2|604316|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MMLLMGVGVQTQEPWEGVSREERGEGECSMEEGEREEEGSWKGEMSMTPT
YHSSSSLWEGDGGKEDEVEDEGEDPGIEIKLVEVKSKNDFLSDHQLAWID
RFVKDERRRGRRRGGKGETEVRERREEGPPCRSFELCHVRSLDRPVEGKK
GGKQR*
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mRNA from alignment at scaffold_29:55255..55992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8867 ID=mRNA_8867|Name=jgi.p|Nanoce1779_2|604316|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at scaffold_29:55255..55992+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGAGGAGGATGA
AGACGAAGAAGAGAAAGAGGCAGCTGCTGCCCTCCAAGGCGACGACCCTC
CCAGTCCCACCGCCTCGCTCGCCGAAGCCGAGAGCCAGGCCATGAGGGAG
GGCAATAAATGATGCTTCTTATGGGGGTTGGGGTCCAGACACAGGAACCT
TGGGAGGGGGTCTCGAGGGAGGAAAGGGGGGAGGGAGAGTGTTCGATGGA
GGAGGGGGAGAGGGAGGAGGAGGGCTCGTGGAAGGGTGAGATGAGTATGA
CACCGACGTACCATTCATCATCTTCGTTGTGGGAGGGGGATGGAGGGAAG
GAGGACGAGGTGGAGGATGAAGGCGAGGATCCTGGAATTGAGATTAAGCT
CGTGGAGGTGAAGAGTAAAAATGATTTTTTGTCTGACCATCAGTTGGCAT
GGATTGACCGATTTGTGAAGGATGAGAGGAGAAGAGGGAGGAGGAGGGGT
GGGAAGGGAGAGACGGAGGTGAGGGAGCGGAGGGAGGAAGGTCCGCCTTG
CAGGTCGTTTGAGCTTTGCCATGTCAGGAGTTTGGATCGGCCTGTGGAGG
GTAAGAAAGGGGGAAAGCAGCGGTAAGAGAAGGAGGAAGAGGAGGAAGAA
GTGGATGAAACGATGGAGGGAGAGGAGAAGGAGGAGGAGGCGGAGGAGGA
GGGGGAGGAGGGGGAGGAAAAGGAGGAGTAAATGCGGG
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Coding sequence (CDS) from alignment at scaffold_29:55255..55992+

>mRNA_8867 ID=mRNA_8867|Name=jgi.p|Nanoce1779_2|604316|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_29:55255..55992+ (Nannochloropsis oceanica)
ATGATGCTTCTTATGGGGGTTGGGGTCCAGACACAGGAACCTTGGGAGGG
GGTCTCGAGGGAGGAAAGGGGGGAGGGAGAGTGTTCGATGGAGGAGGGGG
AGAGGGAGGAGGAGGGCTCGTGGAAGGGTGAGATGAGTATGACACCGACG
TACCATTCATCATCTTCGTTGTGGGAGGGGGATGGAGGGAAGGAGGACGA
GGTGGAGGATGAAGGCGAGGATCCTGGAATTGAGATTAAGCTCGTGGAGG
TGAAGAGTAAAAATGATTTTTTGTCTGACCATCAGTTGGCATGGATTGAC
CGATTTGTGAAGGATGAGAGGAGAAGAGGGAGGAGGAGGGGTGGGAAGGG
AGAGACGGAGGTGAGGGAGCGGAGGGAGGAAGGTCCGCCTTGCAGGTCGT
TTGAGCTTTGCCATGTCAGGAGTTTGGATCGGCCTGTGGAGGGTAAGAAA
GGGGGAAAGCAGCGGTAA
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Synonyms
Publications