jgi.p|Nanoce1779_2|604314, mRNA_8866 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604314
Unique NamemRNA_8866
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length698
Alignment locationscaffold_29:52303..53000 -

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Properties
Property NameValue
TranscriptId604400
TrackFilteredModels2
ProteinId604314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:52303..53000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604314gene_8866Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604314mRNA_8866-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8866CDS_8866Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8866 ID=mRNA_8866|Name=jgi.p|Nanoce1779_2|604314|organism=Nannochloropsis oceanica|type=mRNA|length=698bp
ATGCATACCACCGGGCCTGCTGTCCCAGTCGCTCCTCCCCTCCTCCCTCC
CTCCCTCCCTGGAACTCCCACACGCCCGTGTAAAGGAAAGCAAGGCGGCC
TAGAGCTTGAAGGAGGGCGGGATGCACAGACCATGTGCCGGGGGAGGACG
AGGAAGGGAGGGTGGAAGGGGTGGACGAGGAGAGGGGAGTGAAGAGGAGG
AGGCCTTGATTGTGAAGGGAGGTGAGGAGAAGGAGGGCAGCCGCGGCGGC
AACGGAGAAGGAGGGGAAGCAGGAAGAACTCCCCCCGCTGTCGGCTTTGC
TCTTGTCCTTACTGCTGCTGCTGCTGCTGGCGTTGTCGTCAAGGGAGAGG
GAGAAGGCGTAGACGGGCCCCTGCTTGTCGACGAGGCGGAAGTAGTGACG
ACAGGACGAAAAGGGGGGAGGAGAAGGCATGGAAGGAGGAATCGGAGGAC
GAAAAGGGGGGGAGAAGGATATATGAGCGTCGTTTCCCTCCTCTTGCTCT
TGCTGCTGCTGCTGCGCCAGGAGAAGGAGGAGGACCCAGACCATGGAAGG
CGCAACCAATCGCTGTTGCTGTTGCTGCTGTAGATACTCGTTGAGACATA
CGTCTCCAGTGACAGCGGCAGGATGAGCACCAGAAGCAGCACAACCCTTG
TTTTCCCGCTTCGCCTTAACTCTTTTGGATTCAGGGAGCGGGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|604314

>mRNA_8866-protein ID=mRNA_8866-protein|Name=jgi.p|Nanoce1779_2|604314|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MHRPCAGGGRGREGGRGGRGEGSEEEEALIVKGGEEKEGSRGGNGEGGEA
GRTPPAVGFALVLTAAAAAGVVVKGEGEGVDGPLLVDEAEVVTTGRKGGR
RRHGRRNRRTKRGGEGYMSVVSLLLLLLLLLRQEKEEDPDHGRRNQSLLL
LLL*
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mRNA from alignment at scaffold_29:52303..53000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8866 ID=mRNA_8866|Name=jgi.p|Nanoce1779_2|604314|organism=Nannochloropsis oceanica|type=mRNA|length=698bp|location=Sequence derived from alignment at scaffold_29:52303..53000- (Nannochloropsis oceanica)
ATGCATACCACCGGGCCTGCTGTCCCAGTCGCTCCTCCCCTCCTCCCTCC
CTCCCTCCCTGGAACTCCCACACGCCCGTGTAAAGGAAAGCAAGGCGGCC
TAGAGCTTGAAGGAGGGCGGGATGCACAGACCATGTGCCGGGGGAGGACG
AGGAAGGGAGGGTGGAAGGGGTGGACGAGGAGAGGGGAGTGAAGAGGAGG
AGGCCTTGATTGTGAAGGGAGGTGAGGAGAAGGAGGGCAGCCGCGGCGGC
AACGGAGAAGGAGGGGAAGCAGGAAGAACTCCCCCCGCTGTCGGCTTTGC
TCTTGTCCTTACTGCTGCTGCTGCTGCTGGCGTTGTCGTCAAGGGAGAGG
GAGAAGGCGTAGACGGGCCCCTGCTTGTCGACGAGGCGGAAGTAGTGACG
ACAGGACGAAAAGGGGGGAGGAGAAGGCATGGAAGGAGGAATCGGAGGAC
GAAAAGGGGGGGAGAAGGATATATGAGCGTCGTTTCCCTCCTCTTGCTCT
TGCTGCTGCTGCTGCGCCAGGAGAAGGAGGAGGACCCAGACCATGGAAGG
CGCAACCAATCGCTGTTGCTGTTGCTGCTGTAGATACTCGTTGAGACATA
CGTCTCCAGTGACAGCGGCAGGATGAGCACCAGAAGCAGCACAACCCTTG
TTTTCCCGCTTCGCCTTAACTCTTTTGGATTCAGGGAGCGGGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_29:52303..53000-

>mRNA_8866 ID=mRNA_8866|Name=jgi.p|Nanoce1779_2|604314|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_29:52303..53000- (Nannochloropsis oceanica)
ATGCACAGACCATGTGCCGGGGGAGGACGAGGAAGGGAGGGTGGAAGGGG
TGGACGAGGAGAGGGGAGTGAAGAGGAGGAGGCCTTGATTGTGAAGGGAG
GTGAGGAGAAGGAGGGCAGCCGCGGCGGCAACGGAGAAGGAGGGGAAGCA
GGAAGAACTCCCCCCGCTGTCGGCTTTGCTCTTGTCCTTACTGCTGCTGC
TGCTGCTGGCGTTGTCGTCAAGGGAGAGGGAGAAGGCGTAGACGGGCCCC
TGCTTGTCGACGAGGCGGAAGTAGTGACGACAGGACGAAAAGGGGGGAGG
AGAAGGCATGGAAGGAGGAATCGGAGGACGAAAAGGGGGGGAGAAGGATA
TATGAGCGTCGTTTCCCTCCTCTTGCTCTTGCTGCTGCTGCTGCGCCAGG
AGAAGGAGGAGGACCCAGACCATGGAAGGCGCAACCAATCGCTGTTGCTG
TTGCTGCTGTAG
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Synonyms
Publications