jgi.p|Nanoce1779_2|604311, mRNA_8865 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604311
Unique NamemRNA_8865
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length830
Alignment locationscaffold_29:49600..50580 -

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Properties
Property NameValue
TranscriptId604397
TrackFilteredModels2
ProteinId604311
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:49600..50580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604311gene_8865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604311mRNA_8865-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8865CDS_8865Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8865 ID=mRNA_8865|Name=jgi.p|Nanoce1779_2|604311|organism=Nannochloropsis oceanica|type=mRNA|length=830bp
AACAAAAGATCGTCAGCAGCATAATGGACCTCCTCATCGAGTTGGGCCTG
GCATTTGGCCTGGCTTCTCTCCTTTTGGCACTCGCCCCTTTCTACTACAT
GTTCATCACGCTCGCCATGCTCCTAGGGGTCCTCCTCCTGCTGGCCGGTG
TTCTGGGTACGTTGATTATTTCCATGGTACAAAAGGTGGCTATGCACCCT
TGCCCGTTGATGGTAGATAAAGGCATAATTATAGAGGTCTTGCGTTCCAT
GTATTCGCTCTTCCCCACCTGGACGCTCCCCCCTTTCTCTCTCTCCCTCC
CTTCTAGATCCCTTCGAAATCCCCTGGTACTTCTGGGCGGGCCTCTGCTT
CTACCTCGCCATCAGGCATCAAACCGACGGCTACGTGAAAGGGAGTCTAT
GCAAGGCTGCGGCTGATGGGAATTACGAGTTGGTCAAGAAGTTGCTGGTA
ATTAATCATGGTCAGTACGCGTTGGAGCTGGATGAGAAGGGCTATTCTCC
TGTCATGCACGCCGCCCGTCGCGGGCACCTCCCCCTCGTCAAGCTCCTCC
TCTCCACCGGCCTCTACGACCCTCGAAATTTGTCGGCTAAATCCCGCTCT
GGTAAAAGCGCTCTTTTTTTAGCAGCTCAAGCCAACCACGAGCAGATTGT
GAGATTACTACTGGAGAGAGGGGCGGACCCGGCAGGTTTGATGCAAGACA
CTTGGTTTCAACGGTTTCTGCCTTTCATTGCTGCCTTAAACAGCAGCAGC
AGCAGCAGCAGCAGTGGCAGCAGAGGAGGGACGAGGATAAGACCAGTGAG
ACGACCTTCAGGAAGTTCAGCGGCTCCCCC
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protein sequence of jgi.p|Nanoce1779_2|604311

>mRNA_8865-protein ID=mRNA_8865-protein|Name=jgi.p|Nanoce1779_2|604311|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MDLLIELGLAFGLASLLLALAPFYYMFITLAMLLGVLLLLAGVLGTLIIS
MVQKVAMHPCPLMVDKGIIIEVLRSMYSLFPTWTLPPFSLSLPSRSLRNP
LVLLGGPLLLPRHQASNRRLRERESMQGCG*
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mRNA from alignment at scaffold_29:49600..50580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8865 ID=mRNA_8865|Name=jgi.p|Nanoce1779_2|604311|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at scaffold_29:49600..50580- (Nannochloropsis oceanica)
AACAAAAGATCGTCAGCAGCATAATGGACCTCCTCATCGAGTTGGGCCTG
GCATTTGGCCTGGCTTCTCTCCTTTTGGCACTCGCCCCTTTCTACTACAT
GTTCATCACGCTCGCCATGCTCCTAGGGGTCCTCCTCCTGCTGGCCGGTG
TTCTGGGTACGTTGATTATTTCCATGGTACAAAAGGTGGCTATGCACCCT
TGCCCGTTGATGGTAGATAAAGGCATAATTATAGAGGTCTTGCGTTCCAT
GTATTCGCTCTTCCCCACCTGGACGCTCCCCCCTTTCTCTCTCTCCCTCC
CTTCTAGATCCCTTCGAAATCCCCTGGTACTTCTGGGCGGGCCTCTGCTT
CTACCTCGCCATCAGGCATCAAACCGACGGCTACGTGAAAGGGAGTCTAT
GCAAGGCTGCGGCTGATGGGAATTACGAGTTGGTCAAGAAGTTGCTGGTA
ATTAATCATGGTCAGTACGCGTTGGAGCTGGATGAGAAGGTGAGTTCACC
CGTCTTGGGTGACAGGCGCAGTTTATGTAAGCCTTTCCGCCTACCTGCCT
CCCAGCATTTCCCTACTATCTCTTCTCTGGGTTTTTACTGAGGCTACCTG
TCTGCTTCTCTGACCTCTCCCTCCCTTCCTCCATCCCTAGGGCTATTCTC
CTGTCATGCACGCCGCCCGTCGCGGGCACCTCCCCCTCGTCAAGCTCCTC
CTCTCCACCGGCCTCTACGACCCTCGAAATTTGTCGGCTAAATCCCGCTC
TGGTAAAAGCGCTCTTTTTTTAGCAGCTCAAGCCAACCACGAGCAGATTG
TGAGATTACTACTGGAGAGAGGGGCGGACCCGGCAGGTTTGATGCAAGAC
ACTTGGTTTCAACGGTTTCTGCCTTTCATTGCTGCCTTAAACAGCAGCAG
CAGCAGCAGCAGCAGTGGCAGCAGAGGAGGGACGAGGATAAGACCAGTGA
GACGACCTTCAGGAAGTTCAGCGGCTCCCCC
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Coding sequence (CDS) from alignment at scaffold_29:49600..50580-

>mRNA_8865 ID=mRNA_8865|Name=jgi.p|Nanoce1779_2|604311|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_29:49600..50580- (Nannochloropsis oceanica)
ATGGACCTCCTCATCGAGTTGGGCCTGGCATTTGGCCTGGCTTCTCTCCT
TTTGGCACTCGCCCCTTTCTACTACATGTTCATCACGCTCGCCATGCTCC
TAGGGGTCCTCCTCCTGCTGGCCGGTGTTCTGGGTACGTTGATTATTTCC
ATGGTACAAAAGGTGGCTATGCACCCTTGCCCGTTGATGGTAGATAAAGG
CATAATTATAGAGGTCTTGCGTTCCATGTATTCGCTCTTCCCCACCTGGA
CGCTCCCCCCTTTCTCTCTCTCCCTCCCTTCTAGATCCCTTCGAAATCCC
CTGGTACTTCTGGGCGGGCCTCTGCTTCTACCTCGCCATCAGGCATCAAA
CCGACGGCTACGTGAAAGGGAGTCTATGCAAGGCTGCGGCTGA
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Synonyms
Publications