jgi.p|Nanoce1779_2|604308, mRNA_8864 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604308
Unique NamemRNA_8864
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length396
Alignment locationscaffold_29:49176..49571 -

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Properties
Property NameValue
TranscriptId604394
TrackFilteredModels2
ProteinId604308
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:49176..49571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604308gene_8864Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604308mRNA_8864-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8864CDS_8864Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8864 ID=mRNA_8864|Name=jgi.p|Nanoce1779_2|604308|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
TCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCAGCA
GCAGCGGCGTGTGACTCCACCGTCTTCAGCCCCCGTAGCCATGCCAGTCG
CAGTTGCTCTCTCCCCTTCCGCTTCCCACGAGTCACTTTCCTCTTTCCCA
CCCTCCTTCTCATCGTCCTCCTCAGCGCCACCCGTGGCGACGGCCACAGG
AGGGGGGGGTTGGAGGGAGCACGAGGAGGAGCTACCGCCATTGCCGCAGG
GCTGGGAGGAGAGAGTGACAGAGGAGGGGTATACTTTCTATCTGAATCAC
AATGAGAAGACGACGAGCTGGGAGAGGCCTGTGCCGCGCATGTATGGATA
GAGAAGGTGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|604308

>mRNA_8864-protein ID=mRNA_8864-protein|Name=jgi.p|Nanoce1779_2|604308|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MPVAVALSPSASHESLSSFPPSFSSSSSAPPVATATGGGGWREHEEELPP
LPQGWEERVTEEGYTFYLNHNEKTTSWERPVPRMYG*
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mRNA from alignment at scaffold_29:49176..49571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8864 ID=mRNA_8864|Name=jgi.p|Nanoce1779_2|604308|organism=Nannochloropsis oceanica|type=mRNA|length=396bp|location=Sequence derived from alignment at scaffold_29:49176..49571- (Nannochloropsis oceanica)
TCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCAGCA
GCAGCGGCGTGTGACTCCACCGTCTTCAGCCCCCGTAGCCATGCCAGTCG
CAGTTGCTCTCTCCCCTTCCGCTTCCCACGAGTCACTTTCCTCTTTCCCA
CCCTCCTTCTCATCGTCCTCCTCAGCGCCACCCGTGGCGACGGCCACAGG
AGGGGGGGGTTGGAGGGAGCACGAGGAGGAGCTACCGCCATTGCCGCAGG
GCTGGGAGGAGAGAGTGACAGAGGAGGGGTATACTTTCTATCTGAATCAC
AATGAGAAGACGACGAGCTGGGAGAGGCCTGTGCCGCGCATGTATGGATA
GAGAAGGTGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_29:49176..49571-

>mRNA_8864 ID=mRNA_8864|Name=jgi.p|Nanoce1779_2|604308|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_29:49176..49571- (Nannochloropsis oceanica)
ATGCCAGTCGCAGTTGCTCTCTCCCCTTCCGCTTCCCACGAGTCACTTTC
CTCTTTCCCACCCTCCTTCTCATCGTCCTCCTCAGCGCCACCCGTGGCGA
CGGCCACAGGAGGGGGGGGTTGGAGGGAGCACGAGGAGGAGCTACCGCCA
TTGCCGCAGGGCTGGGAGGAGAGAGTGACAGAGGAGGGGTATACTTTCTA
TCTGAATCACAATGAGAAGACGACGAGCTGGGAGAGGCCTGTGCCGCGCA
TGTATGGATAG
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Synonyms
Publications