jgi.p|Nanoce1779_2|657052, mRNA_8863 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|657052
Unique Name	mRNA_8863
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1344
Alignment location	scaffold_29:47449..48792 +

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Properties


Property Name	Value
TranscriptId	657138
Track	FilteredModels2
ProteinId	657052

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:47449..48792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657052	gene_8863	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657052	mRNA_8863-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8863	CDS_8863	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:47449..48792+
coding sequence from alignment at scaffold_29:47449..48792+

mRNA sequence

>mRNA_8863 ID=mRNA_8863|Name=jgi.p|Nanoce1779_2|657052|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
CTCCCCTTCCCTCCCTCCTTCCCTCCTTCCCTTCCTCGCTTCCTCCAGGA
TTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGCGCACACCTTCTTT
CACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCAACACATTGAATCA
GGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTCGGCACGGCGGTAA
AGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACCCAAGGATGGGATG
GAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATGATGACTAAACGAG
TGAGGATAAATAGTAGGGTAGTCTTCGTTTCCCATGCGTTAGTGTGGGGG
GACGAGGAGGGAAGTCGTGACCTAAGTTGTGATTAGTATTGAGTGAGGAA
GAAGACAGGAGGCAAGGGAACAAAGAAGAGGAGCGTCATAAGAAGAGGAC
AAGATTGAAGCGAACGAGTGCTAGTTAAAGGGAATCAAGAATGCAGAGCA
AATGAAAGAAAAGCGAGAGAATAAGAAGCAGAGAGGCCAAGCAGTCACTC
GACAAGTAAACGACCAGAGGGAGCTGGTCGCGTCCCCAGAACGAGCACCG
CCCCCTCTCTGTGTGAGAGTTGGAGCATTTTGCCCTGCATTCCTCCCCAC
ACATAAGGCCACATTAACCGCGCTCATGCTGCGTTATGTTGAATGCAACC
ACCCAAAGAACCATTCCCATTTATGTTGCCTTTCAATATTGCACTGCGTA
TGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACCGCCGCAGCAGCAAGTCTGTGTTGCCGCCTCGTTCGT
TCTCTTTCTGCGCGTTTCAACCCCTTCTTCGTCTCAACTCGATTCTCTTC
CCTCCCACCCTTCCCCCTACAGGCACGACCACGGAACGCGCACGGCACAA
ACCTTGTAAAATAGAAACAAACAGAAAAGAGGCTGTAAAAATGTCGCGTT
GGTCCTCCTCCTCCTCTTCCCCATCCGCCGCCGCCGCCCTCATCGATGAA
AGTATGCGCGTCGAAGTCGACCTCAAATTGCGCGACAAAGAATTTTCGCT
CCTTCGAGACCTCGTGGATGGAGCACATGCCTTTGCGCCCATAATAACAG
AGATGGGGATATTGGCTAAATTGGCCTTGGTGGGGGCGGGGGGGCTGGTG
TGTGTGTGGGGAGGGAGCGCCTTTTGCAAGGCGGTGGTGACTCCGTTTAG
GAGGAGGGAAGGGAGGAAGGGAGGACGGAGGAGGAGGAGGAACGAGTGGA
CTGAAATGGAGGATGATGGGGGTGGAAAGGAGGATGAGTTGTGA

protein sequence of jgi.p|Nanoce1779_2|657052

>mRNA_8863-protein ID=mRNA_8863-protein|Name=jgi.p|Nanoce1779_2|657052|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MKEKRENKKQRGQAVTRQVNDQRELVASPERAPPPLCVRVGAFCPAFLPT
HKATLTALMLRYVECNHPKNHSHLCCLSILHCVCSSSSSSSSSSSSSSSS
SSSNRRSSKSVLPPRSFSFCAFQPLLRLNSILFPPTLPPTGTTTERARHK
PCKIETNRKEAVKMSRWSSSSSSPSAAAALIDESMRVEVDLKLRDKEFSL
LRDLVDGAHAFAPIITEMGILAKLALVGAGGLVCVWGGSAFCKAVVTPFR
RREGRKGGRRRRRNEWTEMEDDGGGKEDEL*

mRNA from alignment at scaffold_29:47449..48792+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8863 ID=mRNA_8863|Name=jgi.p|Nanoce1779_2|657052|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at scaffold_29:47449..48792+ (Nannochloropsis oceanica)
CTCCCCTTCCCTCCCTCCTTCCCTCCTTCCCTTCCTCGCTTCCTCCAGGA
TTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGCGCACACCTTCTTT
CACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCAACACATTGAATCA
GGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTCGGCACGGCGGTAA
AGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACCCAAGGATGGGATG
GAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATGATGACTAAACGAG
TGAGGATAAATAGTAGGGTAGTCTTCGTTTCCCATGCGTTAGTGTGGGGG
GACGAGGAGGGAAGTCGTGACCTAAGTTGTGATTAGTATTGAGTGAGGAA
GAAGACAGGAGGCAAGGGAACAAAGAAGAGGAGCGTCATAAGAAGAGGAC
AAGATTGAAGCGAACGAGTGCTAGTTAAAGGGAATCAAGAATGCAGAGCA
AATGAAAGAAAAGCGAGAGAATAAGAAGCAGAGAGGCCAAGCAGTCACTC
GACAAGTAAACGACCAGAGGGAGCTGGTCGCGTCCCCAGAACGAGCACCG
CCCCCTCTCTGTGTGAGAGTTGGAGCATTTTGCCCTGCATTCCTCCCCAC
ACATAAGGCCACATTAACCGCGCTCATGCTGCGTTATGTTGAATGCAACC
ACCCAAAGAACCATTCCCATTTATGTTGCCTTTCAATATTGCACTGCGTA
TGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACCGCCGCAGCAGCAAGTCTGTGTTGCCGCCTCGTTCGT
TCTCTTTCTGCGCGTTTCAACCCCTTCTTCGTCTCAACTCGATTCTCTTC
CCTCCCACCCTTCCCCCTACAGGCACGACCACGGAACGCGCACGGCACAA
ACCTTGTAAAATAGAAACAAACAGAAAAGAGGCTGTAAAAATGTCGCGTT
GGTCCTCCTCCTCCTCTTCCCCATCCGCCGCCGCCGCCCTCATCGATGAA
AGTATGCGCGTCGAAGTCGACCTCAAATTGCGCGACAAAGAATTTTCGCT
CCTTCGAGACCTCGTGGATGGAGCACATGCCTTTGCGCCCATAATAACAG
AGATGGGGATATTGGCTAAATTGGCCTTGGTGGGGGCGGGGGGGCTGGTG
TGTGTGTGGGGAGGGAGCGCCTTTTGCAAGGCGGTGGTGACTCCGTTTAG
GAGGAGGGAAGGGAGGAAGGGAGGACGGAGGAGGAGGAGGAACGAGTGGA
CTGAAATGGAGGATGATGGGGGTGGAAAGGAGGATGAGTTGTGA

Coding sequence (CDS) from alignment at scaffold_29:47449..48792+

>mRNA_8863 ID=mRNA_8863|Name=jgi.p|Nanoce1779_2|657052|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_29:47449..48792+ (Nannochloropsis oceanica)
ATGAAAGAAAAGCGAGAGAATAAGAAGCAGAGAGGCCAAGCAGTCACTCG
ACAAGTAAACGACCAGAGGGAGCTGGTCGCGTCCCCAGAACGAGCACCGC
CCCCTCTCTGTGTGAGAGTTGGAGCATTTTGCCCTGCATTCCTCCCCACA
CATAAGGCCACATTAACCGCGCTCATGCTGCGTTATGTTGAATGCAACCA
CCCAAAGAACCATTCCCATTTATGTTGCCTTTCAATATTGCACTGCGTAT
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACCGCCGCAGCAGCAAGTCTGTGTTGCCGCCTCGTTCGTT
CTCTTTCTGCGCGTTTCAACCCCTTCTTCGTCTCAACTCGATTCTCTTCC
CTCCCACCCTTCCCCCTACAGGCACGACCACGGAACGCGCACGGCACAAA
CCTTGTAAAATAGAAACAAACAGAAAAGAGGCTGTAAAAATGTCGCGTTG
GTCCTCCTCCTCCTCTTCCCCATCCGCCGCCGCCGCCCTCATCGATGAAA
GTATGCGCGTCGAAGTCGACCTCAAATTGCGCGACAAAGAATTTTCGCTC
CTTCGAGACCTCGTGGATGGAGCACATGCCTTTGCGCCCATAATAACAGA
GATGGGGATATTGGCTAAATTGGCCTTGGTGGGGGCGGGGGGGCTGGTGT
GTGTGTGGGGAGGGAGCGCCTTTTGCAAGGCGGTGGTGACTCCGTTTAGG
AGGAGGGAAGGGAGGAAGGGAGGACGGAGGAGGAGGAGGAACGAGTGGAC
TGAAATGGAGGATGATGGGGGTGGAAAGGAGGATGAGTTGTGA

Synonyms

Publications