jgi.p|Nanoce1779_2|604305, mRNA_8862 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604305
Unique Name	mRNA_8862
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1632
Alignment location	scaffold_29:46284..48255 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604391
Track	FilteredModels2
ProteinId	604305

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:46284..48255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604305	gene_8862	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604305	mRNA_8862-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8862	CDS_8862	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:46284..48255+
coding sequence from alignment at scaffold_29:46284..48255+

mRNA sequence

>mRNA_8862 ID=mRNA_8862|Name=jgi.p|Nanoce1779_2|604305|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
GTTGACGTTTGCTTTGCCTGGCTTGGTACATATCAGGGGAAAGGTGAAGG
AGGGAGGGGGGAAGGGAGGGCGGCAGCGGCGTGTGCCGCGGATGTTGGTG
GTGGCCCCAACGAGGGAATTGGCGATGCAGAGCGCGGATGTACTGGATGG
GGTGTTGAATGGGCTGGACCTGAGGAGCATATGTTTGTTTGGAGGGGTGA
ACAAGCATGAGCAACGGCAGGCGTTGCGACAGGGGGTGGACATCGTGGTG
GCCACGCCAGGACGGCTTGCGGACCTGATGGAGGAAGGCGAGTGCGACTT
GAGCGAGGTATCGTACCTTGTCCTGGATGAGGCGGATAGGATGCTGGACC
AGGGCTTCGAGCAGGCCATTCGGGGCATCATTTTAGAGTGTGCACCGGCG
GATAAGAGGCAAACGGCCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCA
GACTTTGGCGAGGGAATTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAG
GAGAGGATTTGAGTAGCAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTG
GGGGAGTTTGACCGCGAGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCA
TGGAAAGAGGGATAACAGGGTGCTGATCTTTGCGCTTTATAAGAAGGAAG
CAGGCCGGCTGGAGCAGAATCTGCAACGGCAAGGATTCAATTGCCTGGGT
ATCCACGGGGACAAGGGTCAGAACGATCGCATCGCGGCCATTGAGAAGTT
CAAGACGAAGGAAGTGCCGCTTCTGATTGCGACTGACGTGGCGGCCCGGG
GGCTGGATATCCCGGATGTGGAGGTGGTGATTAATTATTCGTTTCCTTTG
ACGATTGAGGACTATGTACACAGGATTGGTCGTACCGGCCGTGCCGGCAA
GACGGGTATCGCGCACACCTTCTTTCACCAAGGCGACAAGGGGAATGCCG
GCGCGCTCGTCAACACATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGAT
TTGATGAAGTTCGGCACGGCGGTAAAGAAGAAGGAGCACAAGCTATATGG
GGCGTTCGGACCCAAGGATGGGATGGAGGTGAAAAAGGCGACCAAGATTG
TGTTCGGGGATGATGACTAAACGAGTGAGGATAAATAGTAGGGTAGTCTT
CGTTTCCCATGCGTTAGTGTGGGGGGACGAGGAGGGAAGTCGTGACCTAA
GTTGTGATTAGTATTGAGTGAGGAAGAAGACAGGAGGCAAGGGAACAAAG
AAGAGGAGCGTCATAAGAAGAGGACAAGATTGAAGCGAACGAGTGCTAGT
TAAAGGGAATCAAGAATGCAGAGCAAATGAAAGAAAAGCGAGAGAATAAG
AAGCAGAGAGGCCAAGCAGTCACTCGACAAGTAAACGACCAGAGGGAGCT
GGTCGCGTCCCCAGAACGAGCACCGCCCCCTCTCTGTGTGAGAGTTGGAG
CATTTTGCCCTGCATTCCTCCCCACACATAAGGCCACATTAACCGCGCTC
ATGCTGCGTTATGTTGAATGCAACCACCCAAAGAACCATTCCCATTTATG
TTGCCTTTCAATATTGCACTGCGTATGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC

protein sequence of jgi.p|Nanoce1779_2|604305

>mRNA_8862-protein ID=mRNA_8862-protein|Name=jgi.p|Nanoce1779_2|604305|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MLVVAPTRELAMQSADVLDGVLNGLDLRSICLFGGVNKHEQRQALRQGVD
IVVATPGRLADLMEEGECDLSEVSYLVLDEADRMLDQGFEQAIRGIILEC
APADKRQTALFSATWPQSIQTLAREFLREPVKVTIGGEDLSSNKRVKQVV
EVLGEFDREKRLRALLQQYHGKRDNRVLIFALYKKEAGRLEQNLQRQGFN
CLGIHGDKGQNDRIAAIEKFKTKEVPLLIATDVAARGLDIPDVEVVINYS
FPLTIEDYVHRIGRTGRAGKTGIAHTFFHQGDKGNAGALVNTLNQAGQEV
PADLMKFGTAVKKKEHKLYGAFGPKDGMEVKKATKIVFGDDD*

mRNA from alignment at scaffold_29:46284..48255+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8862 ID=mRNA_8862|Name=jgi.p|Nanoce1779_2|604305|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp|location=Sequence derived from alignment at scaffold_29:46284..48255+ (Nannochloropsis oceanica)
GTTGACGTTTGCTTTGCCTGGCTTGGTACATATCAGGGGAAAGGTGAAGG
AGGGAGGGGGGAAGGGAGGGCGGCAGCGGCGTGTGCCGCGGATGTTGGTG
GTGGCCCCAACGAGGGAATTGGCGATGCAGAGCGCGGATGTACTGGATGG
GGTGTTGAATGGGCTGGACCTGAGGAGCATATGTTTGTTTGGAGGGGTGA
ACAAGCATGAGCAACGGCAGGCGTTGCGACAGGGGGTGGACATCGTGGTG
GCCACGCCAGGACGGCTTGCGGACCTGATGGAGGAAGGCGAGTGCGACTT
GAGCGAGGTATCGTACCTTGTCCTGGATGAGGCGGATAGGATGCTGGACC
AGGGCTTCGAGCAGGCCATTCGGGGCATCATTTTAGAGTGTGCACCGGCG
GATAAGAGGCAAACGGCCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCA
GACTTTGGCGAGGGAATTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAG
GAGAGGATTTGAGTAGCAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTG
GGGGAGTTTGACCGCGAGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCA
TGGAAAGAGGGATAACAGGGTGCTGATCTTTGCGCTTTATAAGAAGGTAC
GTGCCGACCCGTGATATTGGGCTATTACGTGTTGGGGTGTGGGTGTGGGT
GTGGATGCGGGTGTGCGTACACTGCTATTCATCTTTCCCCACCCCCATAT
CTGTCCCCATCCCTCCCTCTCTTGCTCATCCCGTCGGCTCTCGTTCCTCC
GCTGCCTTCCCTCCCTCTCCCTCTTTCCCTCTCTCAGGAAGCAGGCCGGC
TGGAGCAGAATCTGCAACGGCAAGGATTCAATTGCCTGGGTATCCACGGG
GACAAGGGTCAGAACGATCGCATCGCGGCCATTGAGAAGTTCAAGACGAA
GGAAGTGCCGCTTCTGATTGCGACTGACGTGGCGGCCCGGGGGCTGGATA
TCCCGGATGTGGAGGTGGTGATTAATTATTCGTTTCCTTTGACGATTGAG
GACTATGTACACAGGTACTGGAGGAGAGGGGGAGAAAAGCAAGCAAGGAA
GGGAGGAAGGGAGGAAGGGAGGAAGGAAGGAAGGAAGGGAGAGACAGAAA
GGGAAACACTAATCGCTCCCCTTCCCTCCCTCCTTCCCTCCTTCCCTTCC
TCGCTTCCTCCAGGATTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATC
GCGCACACCTTCTTTCACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGT
CAACACATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGT
TCGGCACGGCGGTAAAGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGA
CCCAAGGATGGGATGGAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGA
TGATGACTAAACGAGTGAGGATAAATAGTAGGGTAGTCTTCGTTTCCCAT
GCGTTAGTGTGGGGGGACGAGGAGGGAAGTCGTGACCTAAGTTGTGATTA
GTATTGAGTGAGGAAGAAGACAGGAGGCAAGGGAACAAAGAAGAGGAGCG
TCATAAGAAGAGGACAAGATTGAAGCGAACGAGTGCTAGTTAAAGGGAAT
CAAGAATGCAGAGCAAATGAAAGAAAAGCGAGAGAATAAGAAGCAGAGAG
GCCAAGCAGTCACTCGACAAGTAAACGACCAGAGGGAGCTGGTCGCGTCC
CCAGAACGAGCACCGCCCCCTCTCTGTGTGAGAGTTGGAGCATTTTGCCC
TGCATTCCTCCCCACACATAAGGCCACATTAACCGCGCTCATGCTGCGTT
ATGTTGAATGCAACCACCCAAAGAACCATTCCCATTTATGTTGCCTTTCA
ATATTGCACTGCGTATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGC

Coding sequence (CDS) from alignment at scaffold_29:46284..48255+

>mRNA_8862 ID=mRNA_8862|Name=jgi.p|Nanoce1779_2|604305|organism=Nannochloropsis oceanica|type=CDS|length=3087bp|location=Sequence derived from alignment at scaffold_29:46284..48255+ (Nannochloropsis oceanica)
ATGTTGGTGGTGGCCCCAACGAGGGAATTGGCGATGCAGAGCGCGGATGT
ACTGGATGGGGTGTTGAATGGGCTGGACCTGAGGAGCATATGTTTGTTTG
GAGGGGTGAACAAGCATGAGCAACGGCAGGCGTTGCGACAGGGGGTGGAC
ATCGTGGTGGCCACGCCAGGACGGCTTGCGGACCTGATGGAGGAAGGCGA
GTGCGACTTGAGCGAGGTATCGTACCTTGTCCTGGATGAGGCGGATAGGA
TGCTGGACCAGGGCTTCGAGCAGGCCATTCGGGGCATCATTTTAGAGTGT
GCACCGGCGGATAAGAGGCAAACGGCCTTGTTCTCCGCGACCTGGCCGCA
GTCGATCCAGACTTTGGCGAGGGAATTTCTGAGGGAGCCGGTGAAGGTGA
CGATTGGAGGAGAGGATTTGAGTAGCAACAAGAGGGTGAAGCAGGTGGTG
GAGGTGCTGGGGGAGTTTGACCGCGAGAAGCGTTTACGGGCTCTTCTGCA
GCAGTATCATGGAAAGAGGGATAACAGGGTGCTGATCTTTGCGCTTTATA
AGAAGGAAGCAGGCCGGCTGGAGCAGAATCTGCAACGGCAAGGATTCAAT
TGCCTGGGTATCCACGGGGACAAGGGTCAGAACGATCGCATCGCGGCCAT
TGAGAAGTTCAAGACGAAGGAAGTGCCGCTTCTGATTGCGACTGACGTGG
CGGCCCGGGGGCTGGATATCCCGGATGTGGAGGTGGTGATTAATTATTCG
TTTCCTTTGACGATTGAGGACTATGTACACAGGATTGGTCGTACCGGCCG
TGCCGGCAAGACGGGTATCGCGCACACCTTCTTTCACCAAGGCGACAAGG
GGAATGCCGGCGCGCTCGTCAACACATTGAATCAGGCGGGGCAGGAGGTG
CCTGCGGATTTGATGAAGTTCGGCACGGCGGTAAAGAAGAAGGAGCACAA
GCTATATGGGGCGTTCGGACCCAAGGATGGGATGGAGGTGAAAAAGGCGA
CCAAGATTGTGTTCGGGGATGATGACTAAATGTTGGTGGTGGCCCCAACG
AGGGAATTGGCGATGCAGAGCGCGGATGTACTGGATGGGGTGTTGAATGG
GCTGGACCTGAGGAGCATATGTTTGTTTGGAGGGGTGAACAAGCATGAGC
AACGGCAGGCGTTGCGACAGGGGGTGGACATCGTGGTGGCCACGCCAGGA
CGGCTTGCGGACCTGATGGAGGAAGGCGAGTGCGACTTGAGCGAGGTATC
GTACCTTGTCCTGGATGAGGCGGATAGGATGCTGGACCAGGGCTTCGAGC
AGGCCATTCGGGGCATCATTTTAGAGTGTGCACCGGCGGATAAGAGGCAA
ACGGCCTTGTTCTCCGCGACCTGGCCGCAGTCGATCCAGACTTTGGCGAG
GGAATTTCTGAGGGAGCCGGTGAAGGTGACGATTGGAGGAGAGGATTTGA
GTAGCAACAAGAGGGTGAAGCAGGTGGTGGAGGTGCTGGGGGAGTTTGAC
CGCGAGAAGCGTTTACGGGCTCTTCTGCAGCAGTATCATGGAAAGAGGGA
TAACAGGGTGCTGATCTTTGCGCTTTATAAGAAGGAAGCAGGCCGGCTGG
AGCAGAATCTGCAACGGCAAGGATTCAATTGCCTGGGTATCCACGGGGAC
AAGGGTCAGAACGATCGCATCGCGGCCATTGAGAAGTTCAAGACGAAGGA
AGTGCCGCTTCTGATTGCGACTGACGTGGCGGCCCGGGGGCTGGATATCC
CGGATGTGGAGGTGGTGATTAATTATTCGTTTCCTTTGACGATTGAGGAC
TATGTACACAGGATTGGTCGTACCGGCCGTGCCGGCAAGACGGGTATCGC
GCACACCTTCTTTCACCAAGGCGACAAGGGGAATGCCGGCGCGCTCGTCA
ACACATTGAATCAGGCGGGGCAGGAGGTGCCTGCGGATTTGATGAAGTTC
GGCACGGCGGTAAAGAAGAAGGAGCACAAGCTATATGGGGCGTTCGGACC
CAAGGATGGGATGGAGGTGAAAAAGGCGACCAAGATTGTGTTCGGGGATG
ATGACTAAATGTTGGTGGTGGCCCCAACGAGGGAATTGGCGATGCAGAGC
GCGGATGTACTGGATGGGGTGTTGAATGGGCTGGACCTGAGGAGCATATG
TTTGTTTGGAGGGGTGAACAAGCATGAGCAACGGCAGGCGTTGCGACAGG
GGGTGGACATCGTGGTGGCCACGCCAGGACGGCTTGCGGACCTGATGGAG
GAAGGCGAGTGCGACTTGAGCGAGGTATCGTACCTTGTCCTGGATGAGGC
GGATAGGATGCTGGACCAGGGCTTCGAGCAGGCCATTCGGGGCATCATTT
TAGAGTGTGCACCGGCGGATAAGAGGCAAACGGCCTTGTTCTCCGCGACC
TGGCCGCAGTCGATCCAGACTTTGGCGAGGGAATTTCTGAGGGAGCCGGT
GAAGGTGACGATTGGAGGAGAGGATTTGAGTAGCAACAAGAGGGTGAAGC
AGGTGGTGGAGGTGCTGGGGGAGTTTGACCGCGAGAAGCGTTTACGGGCT
CTTCTGCAGCAGTATCATGGAAAGAGGGATAACAGGGTGCTGATCTTTGC
GCTTTATAAGAAGGAAGCAGGCCGGCTGGAGCAGAATCTGCAACGGCAAG
GATTCAATTGCCTGGGTATCCACGGGGACAAGGGTCAGAACGATCGCATC
GCGGCCATTGAGAAGTTCAAGACGAAGGAAGTGCCGCTTCTGATTGCGAC
TGACGTGGCGGCCCGGGGGCTGGATATCCCGGATGTGGAGGTGGTGATTA
ATTATTCGTTTCCTTTGACGATTGAGGACTATGTACACAGGATTGGTCGT
ACCGGCCGTGCCGGCAAGACGGGTATCGCGCACACCTTCTTTCACCAAGG
CGACAAGGGGAATGCCGGCGCGCTCGTCAACACATTGAATCAGGCGGGGC
AGGAGGTGCCTGCGGATTTGATGAAGTTCGGCACGGCGGTAAAGAAGAAG
GAGCACAAGCTATATGGGGCGTTCGGACCCAAGGATGGGATGGAGGTGAA
AAAGGCGACCAAGATTGTGTTCGGGGATGATGACTAA

Synonyms

Publications