jgi.p|Nanoce1779_2|604304, mRNA_8861 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604304
Unique NamemRNA_8861
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length658
Alignment locationscaffold_29:45695..46352 +

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Properties
Property NameValue
TranscriptId604390
TrackFilteredModels2
ProteinId604304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:45695..46352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604304gene_8861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604304mRNA_8861-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8861CDS_8861Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8861 ID=mRNA_8861|Name=jgi.p|Nanoce1779_2|604304|organism=Nannochloropsis oceanica|type=mRNA|length=658bp
TCACTCACTAGCAGTTGAAGAGGACGAGGACGAGGACAAGGACAAGGACG
AGGACAAGGACGAGGACGAGGACAAGGACGAGGACGCAGCGGCGGCGGCA
GCAGCAGCAGCAGTTGAGAAGAAAGCACGCAAGAAGGCCAAGAAAGAAGC
GAAGCGCCTGGCCAAACTAGAAGGGGCTGATGTTGGCGGTGATGCGACTG
CTACTGATGAAGAAAAGAAAGCGGAAAAGGAAGAGGAAGTGGGCAAGGAA
GAGAAGAAACGCCGGAAAAAGGAAAAAAAAACGTCAAGAGAAAGAAACCT
CGTCCTCCTCCGTCCCCTCGACCCCTTCCTCGTCCTGCACCTCCTCTTCG
GACATCATGTCCCAGTCAAAAGCTCAAACTTGGTGGGAGAAGAACGAGAT
CCTGGTCTCTGGCCCTGGATGCGAGCTCTTCCTCCCCACCCTCACCTTTT
CCGGCGCCAACTTCCCCGCAGATCTTTTGGCCTGTACTAAGGGCTTCAAG
GCCCCCACACCTATTCAAGCGCAGTGCTGGCCGGTGTTGATGGCAGGTAG
GGACATCATTGGGATTGCTGAAACGGGCTCGGGGAAGACGTTGACGTTTG
CTTTGCCTGGCTTGGTACATATCAGGGGAAAGGTGAAGGAGGGAGGGGGG
AAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|604304

>mRNA_8861-protein ID=mRNA_8861-protein|Name=jgi.p|Nanoce1779_2|604304|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MLAVMRLLLMKKRKRKRKRKWARKRRNAGKRKKKRQEKETSSSSVPSTPS
SSCTSSSDIMSQSKAQTWWEKNEILVSGPGCELFLPTLTFSGANFPADLL
ACTKGFKAPTPIQAQCWPVL
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mRNA from alignment at scaffold_29:45695..46352+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8861 ID=mRNA_8861|Name=jgi.p|Nanoce1779_2|604304|organism=Nannochloropsis oceanica|type=mRNA|length=658bp|location=Sequence derived from alignment at scaffold_29:45695..46352+ (Nannochloropsis oceanica)
TCACTCACTAGCAGTTGAAGAGGACGAGGACGAGGACAAGGACAAGGACG
AGGACAAGGACGAGGACGAGGACAAGGACGAGGACGCAGCGGCGGCGGCA
GCAGCAGCAGCAGTTGAGAAGAAAGCACGCAAGAAGGCCAAGAAAGAAGC
GAAGCGCCTGGCCAAACTAGAAGGGGCTGATGTTGGCGGTGATGCGACTG
CTACTGATGAAGAAAAGAAAGCGGAAAAGGAAGAGGAAGTGGGCAAGGAA
GAGAAGAAACGCCGGAAAAAGGAAAAAAAAACGTCAAGAGAAAGAAACCT
CGTCCTCCTCCGTCCCCTCGACCCCTTCCTCGTCCTGCACCTCCTCTTCG
GACATCATGTCCCAGTCAAAAGCTCAAACTTGGTGGGAGAAGAACGAGAT
CCTGGTCTCTGGCCCTGGATGCGAGCTCTTCCTCCCCACCCTCACCTTTT
CCGGCGCCAACTTCCCCGCAGATCTTTTGGCCTGTACTAAGGGCTTCAAG
GCCCCCACACCTATTCAAGCGCAGTGCTGGCCGGTGTTGATGGCAGGTAG
GGACATCATTGGGATTGCTGAAACGGGCTCGGGGAAGACGTTGACGTTTG
CTTTGCCTGGCTTGGTACATATCAGGGGAAAGGTGAAGGAGGGAGGGGGG
AAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_29:45695..46352+

>mRNA_8861 ID=mRNA_8861|Name=jgi.p|Nanoce1779_2|604304|organism=Nannochloropsis oceanica|type=CDS|length=361bp|location=Sequence derived from alignment at scaffold_29:45695..46352+ (Nannochloropsis oceanica)
ATGTTGGCGGTGATGCGACTGCTACTGATGAAGAAAAGAAAGCGGAAAAG
GAAGAGGAAGTGGGCAAGGAAGAGAAGAAACGCCGGAAAAAGGAAAAAAA
AACGTCAAGAGAAAGAAACCTCGTCCTCCTCCGTCCCCTCGACCCCTTCC
TCGTCCTGCACCTCCTCTTCGGACATCATGTCCCAGTCAAAAGCTCAAAC
TTGGTGGGAGAAGAACGAGATCCTGGTCTCTGGCCCTGGATGCGAGCTCT
TCCTCCCCACCCTCACCTTTTCCGGCGCCAACTTCCCCGCAGATCTTTTG
GCCTGTACTAAGGGCTTCAAGGCCCCCACACCTATTCAAGCGCAGTGCTG
GCCGGTGTTGA
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Synonyms
Publications