jgi.p|Nanoce1779_2|604302, mRNA_8860 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604302
Unique NamemRNA_8860
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length911
Alignment locationscaffold_29:44151..45061 -

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Properties
Property NameValue
TranscriptId604388
TrackFilteredModels2
ProteinId604302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:44151..45061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604302gene_8860Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604302mRNA_8860-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8860CDS_8860Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8860 ID=mRNA_8860|Name=jgi.p|Nanoce1779_2|604302|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
ACAGGAGGTAGTCGCCGTTGCATCGTCGGCGCGTTTTGAAACAAGTCAGT
CTCAAGTCAAGTTGTTCTTTTTGCCTTTGTCGTCTCTGACACAAACCACG
CTATTACGTGCGCACACGGACTACCAGGCTATCAAGGCGCACGTATAGAA
ACCGGGCACATTTCCCCCGCACACCATCTCGTACAGTCAGACGCGCCAAC
CAGGCAAGAAGCCCTCAGCACCATCATCATACAAGCAAGTAAAATGCTGC
GCCGTCCTCCTACCCGCATTGAGATCAAGCCGGAGGACGTGGAGGAGTTG
GAGGGTAAGTAAAGGAGGATATGAGCGTGGGAATAAGCTGGAGTTTTTTG
TGTGCAACCATGTCTGTGTATGTGTGGCACGGTGGACAGTGTGGCGTGAC
AGCGCTCTCTCGCGTAACTCCTCCCCGCCCGGCCACCACAGCGAGGGCTT
CAAGAAAGCCGAAGAACAGAATCTCAAACGTACTCCCTCTCAAATGTACC
CAATGCTGCTGTTACTATAATGCGGGTGCTGCAGTGGCCCATCACGGGTG
TCAATACCATCCAAACTCACCAACATCACCCTTCACAAACCCCTCTCTTT
TCCGTTCCTCACTTTCTTTCCCCTTCGCTCGTTGGTCGAACAGCCGTCCA
ACAAAGGCAACGGGAACAAGAACACCACCACCAACAACAACAATTTGCCA
CTGCTGCTGCTGCTCGTGTAGCGGGGGGTGTTGGTGTTCCTGTTGCAGGA
GTGAGCACTCCGTGCGGCCCCTCGGACACTACCACTAGTACACCGCAGGG
ACGCACAGGCGGGGTGGAGGGAGGAGCAAGAGGAGGGGGAGGAGAGGGAG
GAGGGAATGGGGCCTACCATACACCCACAGTGGCAGAACGGATTGGCTTG
AGAAGATGAGG
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protein sequence of jgi.p|Nanoce1779_2|604302

>mRNA_8860-protein ID=mRNA_8860-protein|Name=jgi.p|Nanoce1779_2|604302|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MSVGISWSFLCATMSVYVWHGGQCGVTALSRVTPPRPATTARASRKPKNR
ISNVLPLKCTQCCCYYNAGAAVAHHGCQYHPNSPTSPFTNPSLFRSSLSF
PFARWSNSRPTKATGTRTPPPTTTICHCCCCSCSGGCWCSCCRSEHSVRP
LGHYH*
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mRNA from alignment at scaffold_29:44151..45061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8860 ID=mRNA_8860|Name=jgi.p|Nanoce1779_2|604302|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_29:44151..45061- (Nannochloropsis oceanica)
ACAGGAGGTAGTCGCCGTTGCATCGTCGGCGCGTTTTGAAACAAGTCAGT
CTCAAGTCAAGTTGTTCTTTTTGCCTTTGTCGTCTCTGACACAAACCACG
CTATTACGTGCGCACACGGACTACCAGGCTATCAAGGCGCACGTATAGAA
ACCGGGCACATTTCCCCCGCACACCATCTCGTACAGTCAGACGCGCCAAC
CAGGCAAGAAGCCCTCAGCACCATCATCATACAAGCAAGTAAAATGCTGC
GCCGTCCTCCTACCCGCATTGAGATCAAGCCGGAGGACGTGGAGGAGTTG
GAGGGTAAGTAAAGGAGGATATGAGCGTGGGAATAAGCTGGAGTTTTTTG
TGTGCAACCATGTCTGTGTATGTGTGGCACGGTGGACAGTGTGGCGTGAC
AGCGCTCTCTCGCGTAACTCCTCCCCGCCCGGCCACCACAGCGAGGGCTT
CAAGAAAGCCGAAGAACAGAATCTCAAACGTACTCCCTCTCAAATGTACC
CAATGCTGCTGTTACTATAATGCGGGTGCTGCAGTGGCCCATCACGGGTG
TCAATACCATCCAAACTCACCAACATCACCCTTCACAAACCCCTCTCTTT
TCCGTTCCTCACTTTCTTTCCCCTTCGCTCGTTGGTCGAACAGCCGTCCA
ACAAAGGCAACGGGAACAAGAACACCACCACCAACAACAACAATTTGCCA
CTGCTGCTGCTGCTCGTGTAGCGGGGGGTGTTGGTGTTCCTGTTGCAGGA
GTGAGCACTCCGTGCGGCCCCTCGGACACTACCACTAGTACACCGCAGGG
ACGCACAGGCGGGGTGGAGGGAGGAGCAAGAGGAGGGGGAGGAGAGGGAG
GAGGGAATGGGGCCTACCATACACCCACAGTGGCAGAACGGATTGGCTTG
AGAAGATGAGG
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Coding sequence (CDS) from alignment at scaffold_29:44151..45061-

>mRNA_8860 ID=mRNA_8860|Name=jgi.p|Nanoce1779_2|604302|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_29:44151..45061- (Nannochloropsis oceanica)
ATGAGCGTGGGAATAAGCTGGAGTTTTTTGTGTGCAACCATGTCTGTGTA
TGTGTGGCACGGTGGACAGTGTGGCGTGACAGCGCTCTCTCGCGTAACTC
CTCCCCGCCCGGCCACCACAGCGAGGGCTTCAAGAAAGCCGAAGAACAGA
ATCTCAAACGTACTCCCTCTCAAATGTACCCAATGCTGCTGTTACTATAA
TGCGGGTGCTGCAGTGGCCCATCACGGGTGTCAATACCATCCAAACTCAC
CAACATCACCCTTCACAAACCCCTCTCTTTTCCGTTCCTCACTTTCTTTC
CCCTTCGCTCGTTGGTCGAACAGCCGTCCAACAAAGGCAACGGGAACAAG
AACACCACCACCAACAACAACAATTTGCCACTGCTGCTGCTGCTCGTGTA
GCGGGGGGTGTTGGTGTTCCTGTTGCAGGAGTGAGCACTCCGTGCGGCCC
CTCGGACACTACCACTAG
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Synonyms
Publications